EMLSAG00000001304, EMLSAG00000001304-684070 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001304
Unique NameEMLSAG00000001304-684070
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592940370|gb|GAXK01018183.1| (TSA: Calanus finmarchicus comp32024_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 4.212e-2
Identity = 11/33 (33.33%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFA 33
            +  ++  SC+R+V R  +++YVQ      GC+A
Sbjct:  420 ITHVEENSCLRFVERNGEEDYVQIHPGDGGCYA 518
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592895097|gb|GAXK01063278.1| (TSA: Calanus finmarchicus comp809664_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.003e-1
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFA 33
            M  I   SCVR++PR  + +++       GC+A
Sbjct:  420 MAHIMENSCVRFIPRTVEHDFLHIFTKDPGCYA 518
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592860042|gb|GAXK01097520.1| (TSA: Calanus finmarchicus comp38151_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.194e-1
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 0 
Query:    4 IQSGSCVRYVPRRSQKNYVQFRNDKSGCFA 33
            ++  SC+R+V R  + +YVQ      GC+A
Sbjct: 1693 VEENSCLRFVERNGEVDYVQIHPGDGGCYA 1782
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592862260|gb|GAXK01095302.1| (TSA: Calanus finmarchicus comp1395496_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.489e-1
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFA 33
            +  I   SCVR+V R  +++YV       GC+A
Sbjct:  452 ITHIHDNSCVRFVARDGEEDYVDIIPGNGGCYA 550
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592912405|gb|GAXK01045970.1| (TSA: Calanus finmarchicus comp198980_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.245e+0
Identity = 13/39 (33.33%), Postives = 21/39 (53.85%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFN 39
            M +I+ G+CV++VPR     YV    +   C + +  FN
Sbjct:  646 MEQIEQGTCVKFVPRGFNPYYVHIARE-CQCGSRSCAFN 759
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592899710|gb|GAXK01058665.1| (TSA: Calanus finmarchicus comp1217785_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.585e+0
Identity = 12/45 (26.67%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVI 45
            M + +  +C+R++PR S+  ++      SGC +++IG   +R+ +
Sbjct:  871 MKQYREKTCIRFIPRTSETAHIHIMKG-SGC-SSSIGRTGSRQTV 999
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592773408|gb|GAXK01181160.1| (TSA: Calanus finmarchicus comp1953573_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.618e+0
Identity = 11/36 (30.56%), Postives = 19/36 (52.78%), Query Frame = 0 
Query:    1 MNKIQSGSCVRY-VPRRSQKNYVQFRNDKSGCFATA 35
            ++ I+  SCVR+       K+YV   +  SGC+ + 
Sbjct: 1471 LDNIEQNSCVRFRYATVEDKDYVNINSSDSGCYVSG 1578
[Close]
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Match: gi|592904139|gb|GAXK01054236.1| (TSA: Calanus finmarchicus comp1572433_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.896e+0
Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQ-KNY--VQFRNDKSGCFATAIGFNRNRRVIV 46
            + KI+  +C+R+VPR  + K Y  V+  +D   C+   IG   + + ++
Sbjct:  617 IRKIEKHTCIRFVPREEKHKKYLIVKSISDGGSCWTKNIGVPNSEKNVI 763
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000001304 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1217:74233:75362:-1 gene:EMLSAG00000001304 transcript:EMLSAT00000001304 description:"maker-LSalAtl2s1217-snap-gene-1.12")

HSP 1 Score: 153.68 bits (387), Expect = 6.814e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVVLKERMRHYNSNSWRKFSRKQSWNVLVGY 75
            MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVVLKERMRHYNSNSWRKFSRKQSWNVLVGY
Sbjct:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVVLKERMRHYNSNSWRKFSRKQSWNVLVGY 75
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000004531 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2375:4575:5187:1 gene:EMLSAG00000004531 transcript:EMLSAT00000004531 description:"maker-LSalAtl2s2375-snap-gene-0.0")

HSP 1 Score: 75.0998 bits (183), Expect = 6.502e-19
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVV 47
            MN IQ+ SCVR+VPR SQ+N+VQFRND+ GCFA+A+GFN+NR  +VV
Sbjct:   48 MNTIQARSCVRFVPRSSQRNFVQFRNDRXGCFASALGFNQNRXTLVV 94
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000003608 (pep:novel supercontig:LSalAtl2s:LSalAtl2s197:439666:441909:1 gene:EMLSAG00000003608 transcript:EMLSAT00000003608 description:"augustus_masked-LSalAtl2s197-processed-gene-3.1")

HSP 1 Score: 75.485 bits (184), Expect = 7.766e-19
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVVLKER 51
            MN IQ+ SCV +VPR SQ+N+VQFRNDK GCFA+A+GFN NR  +VV  +R
Sbjct:   74 MNTIQAQSCVTFVPRSSQRNFVQFRNDKEGCFASALGFNLNRATLVVNLDR 124
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000009907 (pep:novel supercontig:LSalAtl2s:LSalAtl2s645:36339:38052:1 gene:EMLSAG00000009907 transcript:EMLSAT00000009907 description:"augustus_masked-LSalAtl2s645-processed-gene-0.0")

HSP 1 Score: 67.781 bits (164), Expect = 1.072e-15
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGF 38
            MNKIQS SCVR VPR+SQKNYVQF NDKSGCFATA+  
Sbjct:   74 MNKIQSRSCVRLVPRKSQKNYVQFSNDKSGCFATALDL 111
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000000529 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1082:34274:35257:-1 gene:EMLSAG00000000529 transcript:EMLSAT00000000529 description:"maker-LSalAtl2s1082-augustus-gene-0.6")

HSP 1 Score: 52.7582 bits (125), Expect = 3.141e-10
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVV-LKERM 52
            M+ IQ+ SCV ++ R +Q+N++  RNDK G + +A+GFN+NR    + L  RM
Sbjct:   77 MDTIQTSSCVEFIARSTQRNFIILRNDKRGXYTSALGFNQNRGSTTINLNRRM 129
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000006446 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3528:7829:9665:-1 gene:EMLSAG00000006446 transcript:EMLSAT00000006446 description:"maker-LSalAtl2s3528-snap-gene-0.5")

HSP 1 Score: 51.6026 bits (122), Expect = 2.242e-9
Identity = 24/57 (42.11%), Postives = 42/57 (73.68%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRVIVVLKERMRHYNS 57
            M++I++ +CVR+VPR  +KNYV  +N++ GCFA  +G+N+ RR+ V+  +R   ++S
Sbjct:   74 MDEIENKTCVRWVPRNGEKNYVYIKNNERGCFA-VLGYNQYRRMHVLNLQRSNGFSS 129
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000000817 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:25510:26956:-1 gene:EMLSAG00000000817 transcript:EMLSAT00000000817 description:"maker-LSalAtl2s1136-augustus-gene-0.5")

HSP 1 Score: 48.9062 bits (115), Expect = 6.288e-9
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRV 44
            M +I+S +CV++VPR  QKNYV     + GCFA  +G+NRNR V
Sbjct:   74 MKEIESKTCVKWVPRSGQKNYVTINPREKGCFAV-MGYNRNRGV 116
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000010888 (pep:novel supercontig:LSalAtl2s:LSalAtl2s725:207537:210915:1 gene:EMLSAG00000010888 transcript:EMLSAT00000010888 description:"maker-LSalAtl2s725-snap-gene-1.26")

HSP 1 Score: 50.447 bits (119), Expect = 6.485e-9
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNR 42
            M+ I+  +CVR+VPR  +K+YV  +ND+SGCFA  +G+N  R
Sbjct:   95 MDGIEKKTCVRWVPRNGEKSYVYIKNDESGCFAV-LGYNEYR 135
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000007624 (pep:novel supercontig:LSalAtl2s:LSalAtl2s43:868136:869980:-1 gene:EMLSAG00000007624 transcript:EMLSAT00000007624 description:"maker-LSalAtl2s43-augustus-gene-9.15")

HSP 1 Score: 50.0618 bits (118), Expect = 7.823e-9
Identity = 19/40 (47.50%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:    3 KIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNR 42
            +++S +C++++PR +Q NYV   +D++GCFA A+G+NRNR
Sbjct:  101 EVESKTCLKWIPRTNQINYVDINHDRAGCFA-ALGYNRNR 139
[Close]
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Match: EMLSAP00000002095 (pep:novel supercontig:LSalAtl2s:LSalAtl2s13933:1:965:1 gene:EMLSAG00000002095 transcript:EMLSAT00000002095 description:"maker-LSalAtl2s13933-snap-gene-0.3")

HSP 1 Score: 47.7506 bits (112), Expect = 3.279e-8
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:    1 MNKIQSGSCVRYVPRRSQKNYVQFRNDKSGCFATAIGFNRNRRV 44
            M +I+S +CV++VPR  QK+YV     + GCFA  +G+NRNR V
Sbjct:   65 MKEIESKTCVKWVPRSGQKSYVTINPREEGCFA-VLGYNRNRGV 107
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001304 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001304 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592940370|gb|GAXK01018183.1|4.212e-233.33TSA: Calanus finmarchicus comp32024_c0_seq1 transc... [more]
gi|592895097|gb|GAXK01063278.1|1.003e-133.33TSA: Calanus finmarchicus comp809664_c3_seq1 trans... [more]
gi|592860042|gb|GAXK01097520.1|1.194e-136.67TSA: Calanus finmarchicus comp38151_c0_seq1 transc... [more]
gi|592862260|gb|GAXK01095302.1|2.489e-136.36TSA: Calanus finmarchicus comp1395496_c0_seq1 tran... [more]
gi|592912405|gb|GAXK01045970.1|3.245e+033.33TSA: Calanus finmarchicus comp198980_c0_seq1 trans... [more]
gi|592899710|gb|GAXK01058665.1|3.585e+026.67TSA: Calanus finmarchicus comp1217785_c0_seq1 tran... [more]
gi|592773408|gb|GAXK01181160.1|7.618e+030.56TSA: Calanus finmarchicus comp1953573_c0_seq1 tran... [more]
gi|592904139|gb|GAXK01054236.1|8.896e+028.57TSA: Calanus finmarchicus comp1572433_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000001304 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 13
Match NameE-valueIdentityDescription
EMLSAP000000013046.814e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1217:7423... [more]
EMLSAP000000045316.502e-1968.09pep:novel supercontig:LSalAtl2s:LSalAtl2s2375:4575... [more]
EMLSAP000000036087.766e-1964.71pep:novel supercontig:LSalAtl2s:LSalAtl2s197:43966... [more]
EMLSAP000000099071.072e-1581.58pep:novel supercontig:LSalAtl2s:LSalAtl2s645:36339... [more]
EMLSAP000000005293.141e-1043.40pep:novel supercontig:LSalAtl2s:LSalAtl2s1082:3427... [more]
EMLSAP000000064462.242e-942.11pep:novel supercontig:LSalAtl2s:LSalAtl2s3528:7829... [more]
EMLSAP000000008176.288e-952.27pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:2551... [more]
EMLSAP000000108886.485e-950.00pep:novel supercontig:LSalAtl2s:LSalAtl2s725:20753... [more]
EMLSAP000000076247.823e-947.50pep:novel supercontig:LSalAtl2s:LSalAtl2s43:868136... [more]
EMLSAP000000020953.279e-850.00pep:novel supercontig:LSalAtl2s:LSalAtl2s13933:1:9... [more]

Pages

back to top
BLAST of EMLSAG00000001304 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001304 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001304 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001304 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1217supercontigLSalAtl2s1217:74233..75362 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1217-snap-gene-1.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001304 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001304EMLSAT00000001304-697151Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1217:74233..75362-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001304-684070 ID=EMLSAG00000001304-684070|Name=EMLSAG00000001304|organism=Lepeophtheirus salmonis|type=gene|length=1130bp|location=Sequence derived from alignment at LSalAtl2s1217:74233..75362- (Lepeophtheirus salmonis)
ATGAATAAAATTCAATCAGGGTCTTGTGTTAGATACGTTCCTCGAAGAAG
TCAAAAAAACTATGTTCAATTTAGAAATGATAAGAGCGGATGTTTTGCAA
CTGCAATTGGATTTAATCGAAATAGACGTGTCATTGTTGTAAATTTAAGT
AGAAGAAGGTGTATGGTAAGTACAAAAATTGAACAATTTGAATTTTTTTC
CATCACATTTCGTTGTATTGCTATTTGTCTCGTCTTTAGTTCGCTAAGGA
TAAGAAAATAAATGTTTTAATTAGTGGTGTGTCGGTCCTTATTTAATGAA
TGAGATATAATTGATTCCTATTATAGCCTTATTTTTTCACTATTACCCTC
ATGGCAATTAGAAAGAGGTCATAAAGTTGTTTTCTGTTTTTGTAGGCTAT
TTTTAAGATTCAAAGCATTTTTAAGTGCCTGATGTTGAAGATTGGGATAA
TCCATTTGAGTATATTTCAAGGTTATAAATTCCTTTTGAAAATGTATTTA
TAATGTTTACAACCCAAATTTACTTTGTTTCAAATTAAAAAAGTGTACTT
TTTATTCGGAGGCTTGCAACCTCGGGAAGAATACATTCAGAAAACTTAAC
AGTATCGTATTGGATANCTTAAAGAAGCCCCCTTTAATTTGATCTTATAA
GAAAGGCTTTGCTTGCCATAGTAACAAGCAATAATAATAATTTATTTTTA
GGGTCAAACAACAATTATTCATTAATTGTTTCATGTACTTGGTTTTCTAC
ATGAACAAAATCGACCTGATAGGTATCGATTTATTCGAGTGAACTGGAAT
AATATCATACTATCAATTAGTCGATATTATCAATTTGCTCGAGCCCGAGC
ATCTGGAGAAAGTATAACACCATGCAACTTTAGCAAACTTACACCTTATT
CAAATTGTTATTGACATCCACAACATTAGGACTTTCTTATGATTACCGAT
CCTTCATGCAATATTCAAGGACAGCGTAATGTATTTCTAACCTGATTAAA
CAATTTCCATTAATTCCTTGTTTTAATCCACCAATCATAGGTTCTCAAAG
AACGGATGAGACACTATAACTCCAACTCATGGAGGAAGTTCTCTAGGAAA
CAGAGTTGGAATGTCCTCGTTGGATATTAA
back to top
Add to Basket