EMLSAG00000001313, EMLSAG00000001313-684079 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001313
Unique NameEMLSAG00000001313-684079
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001313 vs. L. salmonis peptides
Match: EMLSAP00000001313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s121:370421:374408:1 gene:EMLSAG00000001313 transcript:EMLSAT00000001313 description:"maker-LSalAtl2s121-augustus-gene-3.12")

HSP 1 Score: 117.857 bits (294), Expect = 2.992e-36
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 
Query:    1 MKPRAPGQLLQSPRYKFHLISVGRLIMVLLLSPPLRLIGLNSLQRKFIVYGIYRLGLSMMLL 62
            MKPRAPGQLLQSPRYKFHLISVGRLIMVLLLSPPLRLIGLNSLQRKFIVYGIYRLGLSMMLL
Sbjct:    1 MKPRAPGQLLQSPRYKFHLISVGRLIMVLLLSPPLRLIGLNSLQRKFIVYGIYRLGLSMMLL 62
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001313 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001313 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001313 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000013132.992e-36100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s121:37042... [more]
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BLAST of EMLSAG00000001313 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001313 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001313 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001313 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s121supercontigLSalAtl2s121:370421..374408 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s121-augustus-gene-3.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001313 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001313EMLSAT00000001313-697160Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s121:370421..374408+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001313-684079 ID=EMLSAG00000001313-684079|Name=EMLSAG00000001313|organism=Lepeophtheirus salmonis|type=gene|length=3988bp|location=Sequence derived from alignment at LSalAtl2s121:370421..374408+ (Lepeophtheirus salmonis)
GGTCTACCTACCTTCCTACGGAAGGGATCATNCACTTCCTCGAAGGGATC
ATGTAGATGAAACCTCGGGCTCCTGGTCAACTGTTGCAATCCCCGAGATA
CAAGTTCCATCTCATATCAGTAGGTCGACTCATAATGGTCCTTCTTCTTT
CTCCCCCTCTTCGTCTCATAGGCCTGAATTCTCTGCAAAGAAAATTTATC
GTCTACGGGATCTACAGACTGGGGCTGTCTATGATGTTGTTGTGAAAGCA
AAAAATAAGTATGGGTGGTCTGAGCAATCCAAAGTTTTTAATTTCTTCAA
TAAGGGAGTTGGTAAGATCATTTTTAGATCATTATTATGTATACATGAAT
GTATGTCCTATTCTTGACTTTTGTTCAAGATTGTTGTATCGTTGAATCCA
TACTTATATATGACAATACATATGCTCAATTAAGATTCACAATCATCCTG
AGGCTCAATTAATGGAATCTAAATAATTGAAAAGGATTTACATTTAGATG
GCGAATGCCTTTTATCTGTCTATCAGGGTATAATTGAACATTGTATGCCA
TTTGAATCCATTTATATCCTTTTAGGGTTTTACTATTGCTACCGAAGCTT
TGTACCAAAAAATGAAATAATCTAGCATATACATAGTTGCAATCATTTTT
TACCCTTATTGTTTGTTTTCCAAGCAATTATGAAAACTTCTTTATACTTT
TTTGGCCTATTTTGTACATCTTATTCGTATTTCCTTGTCCACTCATTTAA
AAATAAAATTGACATCACAAAACCTTACTCATAGAATAATTGGTTAATAC
TCTTAGAATATTCCAGAGAGAGGCAGGAAATCAGGAATTTCGATAGAAGA
AAGAGTGAGAAAAACCGCCATTAACAATAATTTTTAAACTGAGGCTTCCA
AACACCCTGGGAAAATAATAAAGAATGAAATGTATAAATGGAAGAAATCT
TTACCGGTTTATTGTATTCAATATTTGTACTAGACACAGATGCTAATTAG
ATTGGGTAACGACGAGATGTAGACTGGCGTTATAAATCTAAATTAATAAA
ACTAAGTTTACCGGTATGTTTGCCGTAACGTCATTTTTTATCCCAAAAAA
TACAAATTTAGCAACAGGTGTGTGTTGCTAATGCTCAGTGTATCCTATTT
AAWAAAATGAAAAGAAAAGTAAAAAWGAACATAWAAAAAAAAAAAAAAAC
AGAGCAAAAAAATTAAAAAAGTAGTAAAGCAAATCTGAGCGTGTCATATT
AAAAAAGAAAAGAAAATGGGATTCTCANTATATATTTTATTAATAAATTC
TACTAGTGTTTAATTTACAAATGCAATAGATTGAACATATTTCTATACAT
TTTAATGATCCTTCACTAAAAAAGTGTTTGACAAGGAATCGTTTGCAATC
GTTGGAAAACAACAATAAAACAAGGTGAATATTGTTTATACATCAGTATA
AAGAGAATTGAAAATTATCTTATTGTACAAAATAATATAAGAATGAACTT
ATAAATATATATACTAGCATTATGACATTTTTAAAATGGAATATATAAAC
AATGCTTACCTTTCTAAGCTGTTCATAGTTTATTTTCTATGAGTAATATA
TTTATTGTACAGCATACAAGAAGAACAAAAATAATAAATTAACAACCATA
TACTCTATTTTTGAAAAGTAATGACTTGACTTTCGAGAAAAAGCTTTAAA
TTATGACCCATGGGATTAGCCTAACTACCTATATGCATGCATATATTGTT
AGGCCCTTAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNATTACCAAC
TAATATTATATATTTTTCTTATAAATAGTAAAAGTTTTAATGTCATATTA
GTATTGCAGCAATTGTTGCAACTGTTACTTTTTTACTGTGCATTACAATA
TCTCAATAATTAAAAACTTATATATCTCAATAAATTCTCTGTGGATCTTG
AATTTGAATTAAGTTACACAGAAAAAAAAGTGATTCATATGACATTTGTG
AAAGGAAAAACATCGAAAAAACTGATAGCATCCTCCCAAAAAACGCAATT
TATCGCTTAAAAAGGAGATAATAGGTTGGAGGAAAGTAATTTTGTACCAA
TACTTTATAAAAAGGGTTACAAACATGATTCACAATAACTTCCAATTTGA
GCTCACTGAGCTTCTGGTGCATCATCAAAGATGTGTGCAGCCTGGCCTTG
TCTTGGTGATGTCGTATTGTCTCCACTTCTGTTCGATCGCCAGCTTCAAA
CAGTAAAGTTGTTCACAGTAGAGACAAAATCTGTTGTGGAACACTAATTG
AAGTAAATAATAACACTCTATTCATTAACCTATTTGACATGAAACATGTT
CTATATAACTTTTCTCCCAAATTTTTCTAATTGTTCTTTATCAAAATGTC
TGTTTGGCATATTATCCTTCGTCAAAAGGTGTTTTGGCAAACAGTCTTAG
AACTTTAAATTTTATGGGGGTAGTTTATTGGATATTTTAGAATCAGGGAC
TGTTGTTACAACTGTCCCAGATCTCCTAATTTATATTATGATATAAGTTT
TAATATTATATTAATATCCTTCCCGTAGATTACTCAACACAGCAACTCTC
CGTGGCTGAGAAAGACGAGGACAATCAATTATACGATGATAATTCTATGA
ACGCCGTTGACTTACAATCAACTGGAACAGATACAAGTRCCGCCATAAGA
AAAACTGCTTATACCTCTATTACCACAGTCAGTCTGTCTATAGGGATTCT
ACTATCATACACAGTCACCTTACAACTGTTGCTTACTACATCATGTTCCT
CGATCTCCTCTTCATTATTGTTGTTATAATTGAAAAAAGAATATGCAAAA
TTTCAACACCAAGAAGACTAAGAGCCTCATTTCTACATATAGCGTGAATA
TTTTTTACAAAATATAGGGATTGCAGTAGTAAAAAAATAGGTCTTGGGAT
GGTTGGATCTGTGATAATTTTTCAATGTATTTTACATTTATATTTTTTCT
GGATTTTTTTTTAAAGAAGTGGCTGTGATTTGATTTTTTCTACATATACA
AAAGACAAAAAAATAATTAATATATTAGTAAAAAAATATTTTCTTTAGAT
TAATGTATGAAATTATATAGCATTTTTTTTAATTATAAAGTGTCACATAT
TGGTGGAAAATGTGCTTTCATGTAACTTTTGTTATAAACCTCTTCCAAAA
AAAATAATAATTAAATTACCAGACAATTTTAAATTTTATTTGAATCAAAT
AACGCTATTGTTAGGTAATATTCTACCCATATCTAAAATATGATACTTTT
CTGTCACTCAACCCGGGATGTTTTACAATTTTATGCAAGGGTTGAGCATG
AAGTAACCTCAAACTTAAAATTTTGTTACCACTTAGTTGATAATCAAATG
TATAAACTACATTTTCGGACGATAATACTGAATCACAGTTCTTAATAGAT
ACATATTCCTCGTCACTAATTTTCTAAAAGTTCTCAAATTTTACTTCTTA
ATAAATATTTGATATGCAATTATTTTGGCACGGTTAATCCTATTATTGTG
TTTATTAAACTTTTGACTCTGTGTGCTATCGGAGAAATTATTGTATCACT
ATTATAATCAAACTAATTTTATAATAGCGGAGGATTAACCTATTTATCAG
CTGATGTATTTGTATCAAAGTTTTTGGGCCAGTGATCTCGTTAGTAATGT
GTAAATAATATTTATTCAAATTCATAAGAATAAATAGATACATGATTAAA
GAGCTTATATATGACTGGGGTCTACTCTTAAACCATGTATCCATAAATGT
TTATATATTTACTACAACTAAATAGGGGAACATTTGAAACATCAAAAATA
TATTAAAGTTATGGGATTTGAAGCCCTTGCAATTAATAGTTTTTAGCTAC
AAACGTTATTAATAAATCTTAGTGGGATCAAATGATCCCATTATTCATCC
ACAAGGCACAATACGATTGTTCATTACGTTTCAAAATA
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