EMLSAG00000001314, EMLSAG00000001314-684080 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001314
Unique NameEMLSAG00000001314-684080
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001314 vs. C. finmarchicus
Match: gi|592774164|gb|GAXK01180404.1| (TSA: Calanus finmarchicus comp1942283_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.851e-1
Identity = 11/31 (35.48%), Postives = 19/31 (61.29%), Query Frame = 0 
Query:   28 TFSNPSGPGSTAVAMWSVSYGKKCTKSFRGL 58
            ++S P  PG+T +AMWS  Y     +++ G+
Sbjct:  412 SYSVPDLPGTTVLAMWSQPYDLNLYRAYNGV 504
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BLAST of EMLSAG00000001314 vs. C. finmarchicus
Match: gi|592939962|gb|GAXK01018591.1| (TSA: Calanus finmarchicus comp33844_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.922e+0
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = 0 
Query:   20 NKLENMYTTFSNPSGPGSTAVAMWSVSYGKKCTKSF 55
            NK+   + TF+ P  P ST   + +  +GKK T+++
Sbjct:  137 NKMFFHFYTFTRPYFPMSTNKKLHTFQWGKKATRNY 244
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BLAST of EMLSAG00000001314 vs. L. salmonis peptides
Match: EMLSAP00000001314 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:15955:16533:-1 gene:EMLSAG00000001314 transcript:EMLSAT00000001314 description:"maker-LSalAtl2s1222-snap-gene-0.12")

HSP 1 Score: 122.865 bits (307), Expect = 2.935e-38
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 
Query:    1 MQSYAQIISCQIITSRNPDNKLENMYTTFSNPSGPGSTAVAMWSVSYGKKCTKSFRGL 58
            MQSYAQIISCQIITSRNPDNKLENMYTTFSNPSGPGSTAVAMWSVSYGKKCTKSFRGL
Sbjct:    1 MQSYAQIISCQIITSRNPDNKLENMYTTFSNPSGPGSTAVAMWSVSYGKKCTKSFRGL 58
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001314 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001314 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592774164|gb|GAXK01180404.1|3.851e-135.48TSA: Calanus finmarchicus comp1942283_c0_seq1 tran... [more]
gi|592939962|gb|GAXK01018591.1|3.922e+033.33TSA: Calanus finmarchicus comp33844_c1_seq2 transc... [more]
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BLAST of EMLSAG00000001314 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000013142.935e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:1595... [more]
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BLAST of EMLSAG00000001314 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001314 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001314 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001314 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1222supercontigLSalAtl2s1222:15955..16533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1222-snap-gene-0.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001314 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001314EMLSAT00000001314-697161Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1222:15955..16533-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001314-684080 ID=EMLSAG00000001314-684080|Name=EMLSAG00000001314|organism=Lepeophtheirus salmonis|type=gene|length=579bp|location=Sequence derived from alignment at LSalAtl2s1222:15955..16533- (Lepeophtheirus salmonis)
AAATTCGTAAGAAATGGATACAAGCTTGTCGTAAAAACGATATATACCTA
GTTCAAATGCAGTCATATGCTCAGATCATTTCTTGCCAAATAATTACATC
CAGAAACCCGGACAACGTAATTAAAAAGTTAAAAAACGTCGTCAGTGCCT
AGCCAATTTTCAACTATTTGTAAATATCAAAGAGGAAGAAAGCGTCGTCT
GGTTGGTATGAAAAGTTATTAGAAACTTCTTGTGGCATATTTCTACATCA
AAGGGCTTGAATCAGATATTCTTGCTGGAATAATCCGTGAAATAATTACA
TTCAGTTATGAGGCAGGTGTAATGGTAAGATCTATGTGCATGGATGGCAC
TAAATACAAATTATCTGCACTTAATACCCTTGGCTGCAATCTTCATCCCA
AGGTAACTTATTGATTAATTATGTATTAGAATGTAAACAACTCCCATCGT
TTTTTATTGTTTCAGAAACTCGAAAACATGTACACTACTTTTAGCAATCC
CTCTGGCCCAGGATCAACTGCCGTTGCAATGTGGTCCGTCTCATATGGCA
AAAAATGTACGAAATCTTTTAGGGGATTA
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