EMLSAG00000001315, EMLSAG00000001315-684081 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001315
Unique NameEMLSAG00000001315-684081
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001315 vs. C. finmarchicus
Match: gi|592895406|gb|GAXK01062969.1| (TSA: Calanus finmarchicus comp543472_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 7.905e+0
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 0
Query:  199 CISSGKPPIPSRVGVNRKINL 219
            CI S KPPI SR  VN K++L
Sbjct:  741 CIKSPKPPIASREAVNAKLHL 803          
BLAST of EMLSAG00000001315 vs. C. finmarchicus
Match: gi|592895401|gb|GAXK01062974.1| (TSA: Calanus finmarchicus comp543472_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 8.103e+0
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 0
Query:  199 CISSGKPPIPSRVGVNRKINL 219
            CI S KPPI SR  VN K++L
Sbjct:  104 CIKSPKPPIASREAVNAKLHL 166          
BLAST of EMLSAG00000001315 vs. C. finmarchicus
Match: gi|592895402|gb|GAXK01062973.1| (TSA: Calanus finmarchicus comp543472_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.327e+0
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 0
Query:  199 CISSGKPPIPSRVGVNRKINL 219
            CI S KPPI SR  VN K++L
Sbjct:  741 CIKSPKPPIASREAVNAKLHL 803          
BLAST of EMLSAG00000001315 vs. C. finmarchicus
Match: gi|592895400|gb|GAXK01062975.1| (TSA: Calanus finmarchicus comp543472_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.615e+0
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 0
Query:  199 CISSGKPPIPSRVGVNRKINL 219
            CI S KPPI SR  VN K++L
Sbjct:  104 CIKSPKPPIASREAVNAKLHL 166          
BLAST of EMLSAG00000001315 vs. L. salmonis peptides
Match: EMLSAP00000001315 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:63200:64511:1 gene:EMLSAG00000001315 transcript:EMLSAT00000001315 description:"maker-LSalAtl2s1222-augustus-gene-0.8")

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0
Query:    1 MSSEEFRVQNLKEMEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKMLKKQLHQQRSHNNTTPTLNLRNDSPTSDLDTHSPSSEESSPKSTLYNKTTENSKISNLRASFLSNTINGGIENISSSLQIKPCISSGKPPIPSRVGVNRKINLRLKDKKVISVKDEGFFSSYEESSSYGGFNPKSTPHPATKRTXSFQHEPRVKSISNFGALEELNVTSTQLHGQQNEKTPTTIIRYLDYL 307
            MSSEEFRVQNLKEMEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKMLKKQLHQQRSHNNTTPTLNLRNDSPTSDLDTHSPSSEESSPKSTLYNKTTENSKISNLRASFLSNTINGGIENISSSLQIKPCISSGKPPIPSRVGVNRKINLRLKDKKVISVKDEGFFSSYEESSSYGGFNPKSTPHPATKRTXSFQHEPRVKSISNFGALEELNVTSTQLHGQQNEKTPTTIIRYLDYL
Sbjct:    1 MSSEEFRVQNLKEMEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKMLKKQLHQQRSHNNTTPTLNLRNDSPTSDLDTHSPSSEESSPKSTLYNKTTENSKISNLRASFLSNTINGGIENISSSLQIKPCISSGKPPIPSRVGVNRKINLRLKDKKVISVKDEGFFSSYEESSSYGGFNPKSTPHPATKRTXSFQHEPRVKSISNFGALEELNVTSTQLHGQQNEKTPTTIIRYLDYL 307          
BLAST of EMLSAG00000001315 vs. L. salmonis peptides
Match: EMLSAP00000004780 (pep:novel supercontig:LSalAtl2s:LSalAtl2s251:1544475:1545708:1 gene:EMLSAG00000004780 transcript:EMLSAT00000004780 description:"maker-LSalAtl2s251-snap-gene-15.18")

HSP 1 Score: 67.0106 bits (162), Expect = 2.364e-13
Identity = 38/96 (39.58%), Postives = 67/96 (69.79%), Query Frame = 0
Query:   22 KRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKML 117
            KR+++ S+++ +++KK + EQR+ T  II+   Q L+ K+  +Q+L+ K+  EL+K+S ELL+L+S +L E+  LE  I   S+K+ SQ++EI+ L
Sbjct:    9 KRKYLKSQNSVQRIKKELFEQRELTQKIINAFQQELDVKDRHLQKLNRKRHRELTKISSELLYLKSKLLNEQKNLEIKIMNQSSKIISQEHEIRRL 104          
BLAST of EMLSAG00000001315 vs. L. salmonis peptides
Match: EMLSAP00000009307 (pep:novel supercontig:LSalAtl2s:LSalAtl2s595:295853:296661:-1 gene:EMLSAG00000009307 transcript:EMLSAT00000009307 description:"maker-LSalAtl2s595-snap-gene-3.6")

HSP 1 Score: 50.8322 bits (120), Expect = 2.537e-8
Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   14 MEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISE 102
            +E E    + +F   K     +K+  +E+  K   +I   A  L++KEN+IQ+L  K++ EL+++ +EL FLQS ML E+ R+  ++S+
Sbjct:    9 VESEEDFWRNKFYDLKSRYANLKRESRERSSKARKLILATAIKLQEKENEIQKLKAKQDEELAEICRELTFLQSRMLFERKRISELLSD 97          
BLAST of EMLSAG00000001315 vs. Select Arthropod Genomes
Match: gb|KFM68385.1| (Ras GTPase-activating protein SynGAP, partial [Stegodyphus mimosarum])

HSP 1 Score: 51.6026 bits (122), Expect = 8.765e-7
Identity = 35/125 (28.00%), Postives = 70/125 (56.00%), Query Frame = 0
Query:   13 EMEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKMLKKQLH-QQRSH---NNTTPT 133
            E+E E+  L  R M  +   +++K  ++ Q  KT    ++  + +E+KE Q++ L  +K+SE+  +  +LL  ++ + +E+SR+E ++ E   ++ SQ  EI+ L++ +   Q  H    NT P+
Sbjct:   38 ELEAEILRLTTRLMMRERELRQVKNQLKSQVTKTQQQAASWRRRMEEKEEQMRVLLIQKDSEMQSIVSQLLLFEAELRQEQSRIEDLLGEKDAQILSQQKEIERLRRCVSGNQNGHSLDGNTMPS 162          
BLAST of EMLSAG00000001315 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1125_size61249-snap-gene-0.15 (protein:Tk00355 transcript:maker-scaffold1125_size61249-snap-gene-0.15-mRNA-1 annotation:"PREDICTED: hypothetical protein LOC100748446")

HSP 1 Score: 73.559 bits (179), Expect = 5.367e-15
Identity = 49/160 (30.63%), Postives = 89/160 (55.62%), Query Frame = 0
Query:   13 EMEFEVSTLKRRFMASKDNQKKMKKYMQEQRDKTYDIISTVAQVLEQKENQIQELHTKKESELSKLSQELLFLQSNMLKEKSRLESIISELSTKVSSQDNEIKMLKKQLHQQRSHNNTTPTLNLRNDSPTSDLDTHSPSSEESSPKSTLYNKTTENSKIS 172
            EME EV +LKRR++ +K   K ++  M+E R K+  ++   A  L++KE +I+E+   K  +LS++ +EL  L++N++KE+ RL   +      +S Q  EI +LK +  +          ++   D+P+S +++ SP+S  S PK  +  K  +   I+
Sbjct:   63 EMETEVMSLKRRYIETKQRYKALRTMMKENRMKSRQLMVQCALKLQEKEVEIEEIQKTKSEDLSRIGRELTHLRANLMKEQKRLCLHMKARDETISRQAKEIALLKARNEELERFAAKAAEVDRDMDTPSS-IESDSPNSSFSVPKFVIKPKEMDAPPIA 221          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001315 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001315 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592895406|gb|GAXK01062969.1|7.905e+061.90TSA: Calanus finmarchicus comp543472_c0_seq1 trans... [more]
gi|592895401|gb|GAXK01062974.1|8.103e+061.90TSA: Calanus finmarchicus comp543472_c0_seq6 trans... [more]
gi|592895402|gb|GAXK01062973.1|8.327e+061.90TSA: Calanus finmarchicus comp543472_c0_seq5 trans... [more]
gi|592895400|gb|GAXK01062975.1|9.615e+061.90TSA: Calanus finmarchicus comp543472_c0_seq7 trans... [more]
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BLAST of EMLSAG00000001315 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000013150.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:6320... [more]
EMLSAP000000047802.364e-1339.58pep:novel supercontig:LSalAtl2s:LSalAtl2s251:15444... [more]
EMLSAP000000093072.537e-833.71pep:novel supercontig:LSalAtl2s:LSalAtl2s595:29585... [more]
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BLAST of EMLSAG00000001315 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001315 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
gb|KFM68385.1|8.765e-728.00Ras GTPase-activating protein SynGAP, partial [Ste... [more]
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BLAST of EMLSAG00000001315 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001315 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1125_size61249-snap-gene-0.155.367e-1530.63protein:Tk00355 transcript:maker-scaffold1125_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1222supercontigLSalAtl2s1222:63200..64511 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1222-augustus-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001315 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001315EMLSAT00000001315-697162Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1222:63200..64511+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001315-684081 ID=EMLSAG00000001315-684081|Name=EMLSAG00000001315|organism=Lepeophtheirus salmonis|type=gene|length=1312bp|location=Sequence derived from alignment at LSalAtl2s1222:63200..64511+ (Lepeophtheirus salmonis)
TTTGTATATCGTCACATGCGTATGTGTATAGTTTCTGTAGAGAATAATGA GCAGCGAAGAGTTCAGAGTACAAAACCTCAAAGAGGTAGTAGTATAATCA TTATTATTTTTATCCTTGTGGTTGCGTTTATATTATATGTTCATATAGTG GTAGAAATAATATAGTGAATAAATGCGTTTTGACAATATTTAAGTGAACA TATTCGGTTTTTTTTCTTTTTGTAAAATATAATTTTCCTATTATAAACTA ATTATTATATTGTATTTACAGATGGAGTTTGAAGTCTCAACTCTGAAAAG ACGCTTCATGGCATCAAAAGACAACCAGAAGAAAATGAAAAAATATATGC AAGAACAAAGAGACAAAACTTATGATATCATTTCCACAGTCGCTCAAGTT CTGGAGCAGAAAGAGAATCAAATACAAGAGGTAACGAATCCCCCAAGTGT TTGATAAAAGAACATACCCTTATATATTTATTTAATCTTTAAATAGCTCC ATACCAAGAAAGAGTCTGAATTGTCAAAATTATCTCAAGAGCTCCTTTTC CTCCAATCCAATATGCTTAAAGAAAAGTCTCGACTTGAAAGCATAATTTC TGAGCTCTCAACCAAAGTATCATCTCAGGACAATGAGATCAAAATGCTAA AGAAACAGCTTCACCAACAAAGATCACATAATAATACAACTCCGACACTT AATTTACGGAATGATTCTCCAACTTCGGATCTAGACACACACTCTCCCTC GAGTGAGGAGTCCTCACCAAAATCCACACTCTATAATAAAACAACTGAAA ATTCAAAGATATCCAACCTCAGAGCATCGTTCCTTTCAAATACGATTAAT GGCGGCATTGAGAATATAAGTAGTAGTCTTCAAATCAAGCCCTGTATATC CTCGGGAAAGCCTCCTATCCCTAGTCGTGTAGGAGTGAATCGTAAAATAA ATCTACGACTGAAAGATAAAAAAGTGATCAGTGTAAAGGATGAGGGCTTT TTTAGTAGCTATGAGGAGTCCTCGTCTTATGGCGGRTTTAATCCCAAATC AACTCCACATCCCGCTACAAAAAGAACCAYGTCATTTCAACACGAACCAA GAGTTAAATCCATTTCAAATTTTGGAGCTCTTGAAGAGCTGAACGTTACC TCTACTCAGCTACACGGCCAGCAAAATGAGAAAACACCGACAACGATTAT ACGTTATTTGGACTATTTGTGATTTCCTTATTAGATATTGTTTCTTTTGT TGTTATTTGTTATTCTAGTCATAACTAAATATTTATATTATAATATATAC AATACATAAAGG
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