EMLSAG00000001336, EMLSAG00000001336-684102 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001336
Unique NameEMLSAG00000001336-684102
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001336 vs. L. salmonis peptides
Match: EMLSAP00000001336 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1223:292828:294379:-1 gene:EMLSAG00000001336 transcript:EMLSAT00000001336 description:"maker-LSalAtl2s1223-augustus-gene-2.73")

HSP 1 Score: 178.718 bits (452), Expect = 2.192e-59
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MNGPRSFLSIGLGVICYLIAGAFGSLPYNIREEQGSDSNGLPYSAMGSPYQNVRHSNIFTDISNSNNEKNNLEEGIETLSPKVNDLMN 88
            MNGPRSFLSIGLGVICYLIAGAFGSLPYNIREEQGSDSNGLPYSAMGSPYQNVRHSNIFTDISNSNNEKNNLEEGIETLSPKVNDLMN
Sbjct:    1 MNGPRSFLSIGLGVICYLIAGAFGSLPYNIREEQGSDSNGLPYSAMGSPYQNVRHSNIFTDISNSNNEKNNLEEGIETLSPKVNDLMN 88
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001336 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001336 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001336 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000013362.192e-59100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1223:2928... [more]
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BLAST of EMLSAG00000001336 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001336 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001336 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001336 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1223supercontigLSalAtl2s1223:292828..294379 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1223-augustus-gene-2.73
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001336 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001336EMLSAT00000001336-697183Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1223:292828..294379-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001336-684102 ID=EMLSAG00000001336-684102|Name=EMLSAG00000001336|organism=Lepeophtheirus salmonis|type=gene|length=1552bp|location=Sequence derived from alignment at LSalAtl2s1223:292828..294379- (Lepeophtheirus salmonis)
ATGAATGGGCCACGCTCTTTTTTATCAATTGGATTGGGAGTCATTTGTTA
TCTTATTGCTGGTGCGTTTGGGAGTCTTCCATACAATATTCGTGAGGAGC
AAGGCAGTGGTGGGTATTGTATTATAATATGGATAGTTGGTTGTGTTTTT
TTGTTATGAAATAACACTTGAGATTTAAAAAAGAAGGAATAAATATGGAC
ATTTTTCCGTCAATACTAGGTCAATTTTTAGTGGGTTAACGGGATTGTAG
AACTATGCCTAATTGCCTATGGAACATACCTTATTGTCTGTATATTTGTT
TGGGGATTTTGATGAGTATGATTTCAGAGTTCCGCTTACTCTCTTTGCTC
GATACTCTACCAAAAAACCACTCAAAGACTCGAAACAAATGATACTGACA
ATAGACAAGAGTCTATGGGACAATGAGGCATAGTTTTACCATCTTTGTCC
GTTGCTCTACCAAAAAAGTCGACCTAACAATAGGTTATCGATTCAAATAT
ATAATAATGTTGGGTAATGAAGGGTTGTCCAACACGTTGGAGCCTGCTTA
ATGTTTTAGGTGGGTCCACTACTACTCATTCTCACTTTAAGTAGTATGTA
TTTTTTGAAAAATTATACCTCTGGGGGAAAAAAATTATAAAAAGAATTCC
CTTTTTCAAAAAATAAAATCCTGCGGACGCCCCTGAACAGAGTTGCTATA
TTGGACTCTTTTTAAGCAGTTTGGATTTGAAAAAGTAGATTTGGCCTAAA
TTTGAAATATATATGTTTTAATAGTTTAGTTTTATAAATCCATTTTTCAT
GAATAATCCTGGTTTGATAATTATTGATATCTAATTTAAGACACTATAAA
ATCCATTCATTTTTAATTATTTCATGGAGTACCGATGGATTTTATCTACT
TTTATTTCCAATTTGCGGGTCCTTCAATCGATGAATCTACAGGCTTTCTT
GATATAACTGAATCATAATTCGTCAAGGAATACAAANTGTAATGTCGACT
CAATTTTGAGAAAATTCAGCTTGGTTTTGTGTTGAAAAACCACATATCTA
TGGATTTGTATCTTGTGTTTTAAGATTGATATTGTTATGGAATAAGGCAC
TTTATCAAATTAACCAACAAATATACCAAAAAATAATTTTTTTGAAAGAA
AAAGGGATTGATTTTGACAATTCCCAGAGCTCCAGTCAACTTATAATTGT
AGCTCATTTTATTCTTTAAATTTTATTTTATAAATCACCTACAGCATTGA
ATTATATTTTTAAGACGTTTATTGATATTGATTCCCATTTTTCCATTTCT
TTTATTAAAAAATCAATTTTCTTGTCATATCATCATTATTCTTAATAATC
TGGGTAATTATGAATTTATTTTCCTCTCTCATTTTTTTTTCTCATAGATA
GTAATGGTTTGCCGTACTCCGCCATGGGTTCTCCCTATCAAAACGTTCGT
CATTCTAATATTTTTACCGATATTAGTAACAGCAATAACGAAAAAAATAA
TCTCGAAGAAGGGATTGAGACTCTGAGTCCAAAAGTGAACGACCTTATGA
AT
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