EMLSAG00000001352, EMLSAG00000001352-684118 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001352
Unique NameEMLSAG00000001352-684118
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001352 vs. L. salmonis peptides
Match: EMLSAP00000001352 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:274373:277074:1 gene:EMLSAG00000001352 transcript:EMLSAT00000001352 description:"snap_masked-LSalAtl2s122-processed-gene-2.3")

HSP 1 Score: 152.14 bits (383), Expect = 3.178e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MKILEIMYPMIMNIMKLCMIEVLDLLFEEEEENDVVIEPPDVWDLTDEDSGDENLDGILSADNLSAQQLHEPAELRP 77
            MKILEIMYPMIMNIMKLCMIEVLDLLFEEEEENDVVIEPPDVWDLTDEDSGDENLDGILSADNLSAQQLHEPAELRP
Sbjct:    1 MKILEIMYPMIMNIMKLCMIEVLDLLFEEEEENDVVIEPPDVWDLTDEDSGDENLDGILSADNLSAQQLHEPAELRP 77
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BLAST of EMLSAG00000001352 vs. L. salmonis peptides
Match: EMLSAP00000002089 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1391:22732:23037:-1 gene:EMLSAG00000002089 transcript:EMLSAT00000002089 description:"augustus_masked-LSalAtl2s1391-processed-gene-0.3")

HSP 1 Score: 92.0485 bits (227), Expect = 2.055e-25
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   19 MIEVLDLLFEEEEENDVVIEPPDVWDLTDEDSGDENLDGILSADNLSAQQLHEPAELRP 77
            M EVLDLLFE++ ENDV IEPPDV DLTD+DSGDEN D IL ADNLS QQLH PAELRP
Sbjct:    1 MNEVLDLLFEDQGENDVFIEPPDVRDLTDDDSGDENCDEILRADNLSTQQLHAPAELRP 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001352 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001352 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001352 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000013523.178e-49100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s122:27437... [more]
EMLSAP000000020892.055e-2579.66pep:novel supercontig:LSalAtl2s:LSalAtl2s1391:2273... [more]
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BLAST of EMLSAG00000001352 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001352 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001352 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001352 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s122supercontigLSalAtl2s122:274373..277074 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s122-processed-gene-2.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001352 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001352EMLSAT00000001352-697199Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s122:274373..277074+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001352-684118 ID=EMLSAG00000001352-684118|Name=EMLSAG00000001352|organism=Lepeophtheirus salmonis|type=gene|length=2702bp|location=Sequence derived from alignment at LSalAtl2s122:274373..277074+ (Lepeophtheirus salmonis)
ATGAAAATATTGGAAATCATGTATCCTATGATTATGAATATAATGTATAT
ACGGTGGGTGGGCATCACTTCCAGAACACTTAACATAGTATTGAATCAGA
TTAAAATGAACGCACTAATTTAAATGATTAATGATTTATAATATCGAATA
ATTTATTTTTGAAAATAAAAAGAGTGAAGTGATAACAAATTTGCTTTCAT
GCTGCTACAGCAGAAATATTTTCTACAATATTTGATCCTTAATAAGTTGT
AGATATTGGCAATAAACATCTTCTGCCTTCTTGTGGCAGAAAAAGTAGTC
GTTACGTGGCTTGAAGATGGCGMCAAGAGMGATTATTTTTTCATGACTGA
ACAACAACACTTTATAAAGATACTTGCTTTTCAGAAAGTTGATGAACTTT
TTTACTCTCTTCAAACGCTTCTCCTTGACCACAGAGATGAATTTTTATCT
TAGGTCCTCTTTCTTGACTGTGTCCAAAGATCTTGCTTCGGTAAGCGGCC
CACGAACAACCAAGACATCCCATKCTTCTTGGKCAGCCTCCACACTTATA
ACTAAAGTTGGTAATCAAGCAGAGATTTACATTATGTATATTTTTCTACG
AACTAGAAATTTTATTACATGCCATGTGCATCCTCTGTGACCTCAAACAC
CTTATTGATGTTTTAGAGACTATTTCTCTTGCAACTCAAGGACATAAAAA
TGCCATTGGATCTCAAGAGCAAATCAATATTACGTTCCTTTGCTTCCCAT
AATGTATGACACTCTTTATTTTTGTTCAAATGATCAGAAATAGTAAAATA
ACATTATAATTTGTTTACAGATCATTTTATTTAACTAGAATAGGTTTTCT
CAGCGTTGAAATTAAATTTAATGATGAACTCTATAGCTAAATGTAAAACA
AAAATAAATACCGTAAAATTGAATAATTATTCACTTTGGAACTTGTTGTA
ATAATGTGTCTTTGCACCTTTATTTCATAAGGAGATAGAGTAGGTTTGTC
CGGCGTTGCCCGGGATATTATTGCAGTAAAGTTTTAAAAATTATATTCGC
TGCATGTTTCACAGAAATTATAAGGTAGAGAGAAGAAAAAATATTCAAGT
GAAACTAACGTTCGCTCAAGTTTTAAATTATTGTCATTAATTCTTTGTCT
TATTCTATCTTCTTATTTTTTTCTTCTCTAAATCTTATAATCTCCTTTAA
AAAAGTGTGCAAAGATACATATCAACATGCAGATTGAATAATTCTAAAAA
TTTTACGTTCTTTATTTTTTGTTTGATATGTAAGCTTGGGATGTTTGTCA
AAAAAAGGATTTTCACAAAAATACTATTCAAAGGGCACCATGGCATTGAA
TACCAAAAAATTGTTATCAGAACCGTATCTAAAGCTTTATTAATCTACAT
TAAAAAAGTCATCAAAATTTCATCATTGGTTTAATCGTGATTGCAAGACA
TTTGCATTTTGTATATATATATTAGTCCCTAGAAATGTACCTGCAAAATG
CAAATTCAAATAATATAAGTTAGCATCTCTATATAAAATAGCTTGAACTT
AATTATTAAATTCCATATACAATGATTCAGAATAATATATAACAATGAAC
AATATTACATTATTTCATTCTAAATTTCAACGTTCATGACGTTCATGTTA
TACATGAACATTATTAGAGTTGTAGCTTCATTTAATTATTTATGGGGTAT
GGAATATAGATACAAGCAATGGTTTAAAATAAATGTTGTTTTTTGGTGAT
GAATAAATTATAATAATAACTGTTTATTTTAATTAATATTACACGTAGAT
TGATTTAAAATCCCAATTTCCTTAAATTTATAAGCATTAAACCTCTCAAA
ACAAATAAATGTGATTTTTTTTACAATTTCATTCATATGAACTAATCAAG
CTTCTTACATCTCCCGAGGCCATAGATCTACCACTCTAATCCTTTTCTTG
GAAGTGAGATATTGAGTTAATCTTCTTATTATGAAATGTTATCAAAATTA
GAGCATATGAAGTTTGAGATGTTAAAACTTAAAAAATATTGTCAAGGTCA
AACATACTTTTTAATATTAACCCATTCTCTCCTGGTGATCCCGTTTGGGA
TCACAAAATATTTTACAATAAATAAATGCTTAGAATCAAAATCTTATATA
TATATAGATCATTAACTCACTAAATACCAAGATTAATACGTTTCCTGTAC
TTTATAAATTTTTTGTAGCGTCGTTTCATAATAATATCTGAGAGTTACAA
GGTGTTTATGAAAATCTTATTTTTCAAAATTATTTCGAAGATGGCGAATT
GTAGAAAGTAAACTATATTTCATTTGTATTATTATTTATATTGCATATTG
GCTATAATATTATCTTGTTAGGTAACTGTTACTCGATTGATGTATTTTTT
AAGCCATTGCAATAGTTTTTTCAAAGTTCAAAATGAGTTTCAATCTGGTG
GTACTGTTTGGGATCACTATTAGAATTCATGAATAAAATGCTAATTTATA
TTTTTTGAAAAGGAAACTATGTATGATCGAAGTTCTTGATCTATTATTTG
AGGAGGAGGAGGAAAATGACGTAGTCATTGAACCACCTGATGTTTGGGAT
TTAACAGATGAGGATTCGGGAGATGAGAACCTTGATGGGATCCTCAGTGC
CGACAATTTGTCGGCTCAGCAACTACATGAACCTGCTGAATTGCGCCCTT
GA
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