EMLSAG00000001363, EMLSAG00000001363-684129 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592832575|gb|GAXK01124969.1| (TSA: Calanus finmarchicus comp24648_c0_seq1 transcribed RNA sequence) HSP 1 Score: 116.316 bits (290), Expect = 9.684e-29 Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 0 Query: 7 IILFAS-MALAAPEFDGHFLSQNQ---QSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXX---EMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNAS-----SVCCDTDPN 172 + FA+ +A +S NQ +P C+DDSDC G+ YACF+Y CYPW+DDS VS++ R+ TC+ + +C CFRHHD R+I++GLC++ I+ +SDC EY + LPCV+D GC D+G G +CCP + S S CC+ DPN Sbjct: 983 LYAFATILAFVHCNVQHELVSMNQVKNTEAPFKACIDDSDCNSQGNGYACFQYICYPWEDDSAVSKEDRKATCKSNEQCGSDLVCFRHHDRRNIHKGLCMEPIVDCSENGDSDCKHGPNRACCNGQYCCGEEYFDQLKQLPCVNDQGCKDMGYGNFCCPDKSGSNSTLPSTCCNEDPN 1516
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592887782|gb|GAXK01070593.1| (TSA: Calanus finmarchicus comp215788_c2_seq1 transcribed RNA sequence) HSP 1 Score: 67.0106 bits (162), Expect = 3.089e-12 Identity = 54/160 (33.75%), Postives = 74/160 (46.25%), Query Frame = 0 Query: 32 SPLPVCLDDSDC---VKHGDK-YACFKYFCYPWKDDSDVSEKFRRQTCRED--------SECNEGQSCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNASSV---CCDTDPNPSTT 176 + PVC+ D DC + GD Y CF+Y C+PW DD ++ +FR R+D + CFRH D R IN G+C+ L C SDC ++ C E EY M DL C C DL +G +CC ++ + CCD D + Sbjct: 518 AKFPVCVTDDDCRDISEQGDADYRCFQYRCFPW-DDQELQGEFRSCKTRKDCLELGEEEGGDGDDGECFRHQDRRKINMGMCVRKRLALHCYGPSDCLENEKCVNTYCGEEEYFMALQDLQCFRHDYCQDLYLGTHCCYDFSSDILGRKCCDADGDAGVI 994
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592777269|gb|GAXK01177299.1| (TSA: Calanus finmarchicus comp140813_c1_seq1 transcribed RNA sequence) HSP 1 Score: 64.3142 bits (155), Expect = 1.602e-11 Identity = 51/159 (32.08%), Postives = 74/159 (46.54%), Query Frame = 0 Query: 35 PVCLDDSDCVK----HGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSE-CNEGQ----SCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCC-------PRHNASSVCCDTDPNPSTTP 177 PVCL DSDC G Y CF+Y CYPW+ + FR+ ++D + EG+ CFRH + + ++ G+CL + C SDC S G C + +Y + D+ CV D C DL +G CC H+ + CC + + P Sbjct: 163 PVCLIDSDCQGIAELKGQDYRCFQYMCYPWEHGEGEGD-FRKCQVKDDCKGMGEGEMEDGDCFRHPERKQVSSGICLRQSESKSCSEHSDCLASLACVNGYCGDRQYLVALGDMQCVDDSLCRDLLLGDLCCYDVRSSPSNHSLTRKCCQNEHDAPVIP 636
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592835294|gb|GAXK01122250.1| (TSA: Calanus finmarchicus comp106713_c0_seq1 transcribed RNA sequence) HSP 1 Score: 62.003 bits (149), Expect = 1.635e-10 Identity = 54/171 (31.58%), Postives = 73/171 (42.69%), Query Frame = 0 Query: 33 PLPVCLDDSDCVKHGDK----YACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQS----------CFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCC--PRHNASSV----------CCDTDPNPSTTP 177 PVC+ D DC DK Y CF+Y CYPW + + + FR TC+ S+C S CFRH D R++ G+CL D ++ C +DC C E +Y +L C D C D+ +G +CC R S+ CCD P P Sbjct: 724 KFPVCVTDDDCDNISDKKHESYKCFQYMCYPWNNKAQ-GQPFR--TCKRRSDCKALSSAEGGDGGNGDCFRHQDRRNVFSGICLSDSDMKPCFEHTDCAAGRKCTNQFCGEEQYFTALEELSCKKDSFCQDMLLGDHCCFDIRGGLSAWDSGEPDWGMKCCDNKAAPVKQP 1227
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592808729|gb|GAXK01145839.1| (TSA: Calanus finmarchicus comp1045456_c0_seq1 transcribed RNA sequence) HSP 1 Score: 60.4622 bits (145), Expect = 4.997e-10 Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 0 Query: 31 SSPLPV-CLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGXXXXXXXXXXXXXXSDC-GQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYC 156 +S L V C+DDSDCV G +YAC+ Y C W +D Q C D +C G C+RHH++R ++ G+C LE C +C G++ CG CC Y+ ++ + CV+D+ C G +C Sbjct: 86 NSTLSVGCIDDSDCVPLGHEYACYFYRCLNWMGGADTG----LQHCSRDWQCGAGSRCYRHHNLREVSAGICFPASQLETCRSHDECEGETPHCCGMWCCPPLYYRQWQNFSCVTDMQCRTWNTGSFC 457
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592921547|gb|GAXK01036828.1| (TSA: Calanus finmarchicus comp406413_c3_seq2 transcribed RNA sequence) HSP 1 Score: 58.9214 bits (141), Expect = 1.426e-9 Identity = 61/173 (35.26%), Postives = 78/173 (45.09%), Query Frame = 0 Query: 32 SPLPVCLDDSDCVKHGDKYACFKYFCYPWK---------DDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNAS-----------SVCCDTDPNPSTTPVPIQSPA 184 S P C DSDC G ACF+Y CYPW DDSD S T RED + +G+ CFRH D +I G+CL I ++C SDC G C + Y + PC D C L G+ CC +A+ CC+ NPS +PV I+ P+ Sbjct: 358 SLYPACALDSDC---GGGRACFQYMCYPWNTSTGFRWCSDDSDCSS----LTVREDGDGKDGR-CFRHKDRENIGFGICLKKIETKKCWTHSDCPSHLRCTNGYCGDPTYFKALQERPCEEDKQCEKLLTGEMCCYDTSAADQWKSGQDGIKKKCCN---NPSGSPV-IRPPS 840
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592921548|gb|GAXK01036827.1| (TSA: Calanus finmarchicus comp406413_c3_seq1 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 5.081e-8 Identity = 67/203 (33.00%), Postives = 87/203 (42.86%), Query Frame = 0 Query: 8 ILFASMALAAPEFDGHFLSQNQQS-----------SPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECN------EGQS----CFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNAS-----------SVCCDTDPNPSTTPV 178 +LF ++ L A F L QNQ + S P C DSDC G + ACF+Y CYPW + S FR C +DS+C+ EG CFRH D +I G+CL I ++C DC G C + Y D PC D C L G+ CC +A+ CC+ NPS +PV Sbjct: 458 LLFRAIGLWAL-FVSQVLGQNQVNLARNRHSLRNISLYPACALDSDC--EGGR-ACFQYMCYPW----NTSTGFR--WCSKDSDCSSLTVKEEGDGKDGRCFRHKDRENIGFGICLKKIESKKCWTHHDCLSHLRCTNGYCGDPGYFKALQDRPCEHDEVCEQLLTGEMCCFDLSAADQWKSGQAGWKKKCCN---NPSGSPV 1027
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592868215|gb|GAXK01089347.1| (TSA: Calanus finmarchicus comp890548_c1_seq1 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 7.834e-8 Identity = 49/159 (30.82%), Postives = 70/159 (44.03%), Query Frame = 0 Query: 7 IILFASMALAAPEFDGHFLSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFR---HHDIRSINRGXXXXXXXXXXXXXXSDC-GQSYXXXXXXXXE----MEYHMRFADLPCVSDLGCMDLGMGKYCC 157 + +F +++L + L+ + S+P C+DDSDC G KYAC+ Y C W D E C D +C +C+R HHD S GLC I L+ C S C G S C ++Y+ ++ CV+D C G CC Sbjct: 38 LTIFTTISLTSS------LAMSSTSTPSIACIDDSDCTSLGHKYACYLYQCINWMDKDTGMEH-----CDRDEQCGHASTCYRPPHHHDPSS---GLCFPSIQLQHCSEHSSCSGYSTSALQYCCGRRCCPLQYYRQWRQFSCVTDTQCRQWNTGDRCC 472
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592818872|gb|GAXK01135696.1| (TSA: Calanus finmarchicus comp153216_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 1.310e-7 Identity = 45/146 (30.82%), Postives = 61/146 (41.78%), Query Frame = 0 Query: 32 SPLPVCLDDSDC----VKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSEC----------NEGQSCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNAS 163 + PVC+ D DC +HG Y CF+Y CYPW D + FR +C+ S+C E CFRH D R++ G+CL+ C DC G C + +Y C C +L +G CC A Sbjct: 342 AVFPVCVTDEDCEGMTQQHGFDYKCFQYMCYPWNKAEDEA-PFR--SCKRRSDCLGLTQEEGGDGEDGDCFRHQDRRNVFTGICLEKRQNTRCFEHPDCPDDLKCINGFCGDTQYFQELKSFSCEVTTFCEELLIGDLCCYDFTAE 770
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Match: gi|592904396|gb|GAXK01053979.1| (TSA: Calanus finmarchicus comp265918_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 4.140e-5 Identity = 45/140 (32.14%), Postives = 58/140 (41.43%), Query Frame = 0 Query: 34 LPVCLDDSDC----VKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSEC-----NEG-----QSCFRHHDIRSINRGXXXXXXXXXXXXXXSDCGQSYXXXXXXXXEMEYHMRFADLPC--VSDLGCMDLGMGKYCC 157 PVC+ D DC + G Y CF+Y CYPW FR +C+ S+C EG C+RHHD R++ G+CL + C DC C E Y+ C D C DL +G CC Sbjct: 265 FPVCVTDEDCEEISMDSGSDYRCFQYMCYPWG-RGGGGGPFR--SCKRRSDCHGLVEEEGGDGMDGDCYRHHDRRNVFAGICLHPSEILSCSEHKDCPPHLRCTNFYCGEPHYYQALKSEACPRYQDSFCQDLLLGDSCC 675
BLAST of EMLSAG00000001363 vs. L. salmonis peptides
Match: EMLSAP00000001363 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:102963:105744:1 gene:EMLSAG00000001363 transcript:EMLSAT00000001363 description:"maker-LSalAtl2s1230-augustus-gene-1.22") HSP 1 Score: 437.958 bits (1125), Expect = 1.633e-157 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 Query: 1 MIPHHVIILFASMALAAPEFDGHFLSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNASSVCCDTDPNPSTTPVPIQSPATGSGVSLDHNRLYSSFHHLLLLLSIIIIRLR 215 MIPHHVIILFASMALAAPEFDGHFLSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNASSVCCDTDPNPSTTPVPIQSPATGSGVSLDHNRLYSSFHHLLLLLSIIIIRLR Sbjct: 1 MIPHHVIILFASMALAAPEFDGHFLSQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNASSVCCDTDPNPSTTPVPIQSPATGSGVSLDHNRLYSSFHHLLLLLSIIIIRLR 215
BLAST of EMLSAG00000001363 vs. L. salmonis peptides
Match: EMLSAP00000000553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:507460:508614:-1 gene:EMLSAG00000000553 transcript:EMLSAT00000000553 description:"maker-LSalAtl2s108-augustus-gene-5.6") HSP 1 Score: 97.8265 bits (242), Expect = 2.032e-24 Identity = 58/170 (34.12%), Postives = 80/170 (47.06%), Query Frame = 0 Query: 26 SQNQQSSPLPVCLDDSDCVKHGDKYACFKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQS-----CFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCC-----------PRHNASSVCCDTDPNPSTTPVP 179 +QN S CLDD +C K G ++CF+YFCYPW + +D + CR +C G+ C+RHH R G+CLDD+ EC +CG S C G CC+ Y PC ++ GC DL +G+ CC N + VCCD + +P Sbjct: 26 TQNLNISIYTPCLDDEECNKEG--WSCFQYFCYPWSEKADAPSPKHFEPCRRSKDCPVGEKGEKGECYRHHSRRRXTSGICLDDV--AECYSHDECG-SRKCCNGNCCDGAYFEALKAFPCTTNDGCKDLLLGELCCVNIMGALAFETSTPNWNKVCCDNNLGSPIVQIP 190
BLAST of EMLSAG00000001363 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold536_size144403-snap-gene-0.13 (protein:Tk11926 transcript:maker-scaffold536_size144403-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 145.206 bits (365), Expect = 2.106e-44 Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0 Query: 53 FKYFCYPWKDDSDVSEKFRRQTCREDSECNEGQSCFRHHDIRSINRGLCLDDILLEECEIESDCGQSYGXCGGXCCEMEYHMRFADLPCVSDLGCMDLGMGKYCCPRHNASSVCCDTDPNPSTTPVPIQSPATG 186 F+Y CYPW+DDS V E +R+TCR+DSEC+ G+ C+RH+D R+I +GLC D+I ECE +DC +G CGG CCE +Y+ F+DLPCVS GC DLG+G++CCPR N + CC+TDPNP TT VP ++ G Sbjct: 15 FQYVCYPWRDDSKVPEDEKRETCRKDSECSSGEECYRHYDRRNIVKGLCFDEIT--ECETPNDCSDGFGCCGGYCCEQKYYAHFSDLPCVSHFGCRDLGLGQFCCPRDNGTDTCCNTDPNPQTT-VPPRAATAG 145 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001363 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001363 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 18
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BLAST of EMLSAG00000001363 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001363 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001363 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001363 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001363 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1230:102963..105744+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001363-684129 ID=EMLSAG00000001363-684129|Name=EMLSAG00000001363|organism=Lepeophtheirus salmonis|type=gene|length=2782bp|location=Sequence derived from alignment at LSalAtl2s1230:102963..105744+ (Lepeophtheirus salmonis)back to top Add to Basket
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