EMLSAG00000001372, EMLSAG00000001372-684138 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592925685|gb|GAXK01032730.1| (TSA: Calanus finmarchicus comp2739635_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.250e+0 Identity = 15/66 (22.73%), Postives = 34/66 (51.52%), Query Frame = 0 Query: 371 VKKNDHWITTFSFQTKNVQNIGINKNGTFCFLMEVHQDI-----------GSVLTNEKFPITSQHC 425 V+K + W+T F + N + +G++++ T C L +++ D+ ++ T E+ P+ + C Sbjct: 23 VQKKEVWMTKFDAKIANPEQVGVSQDETLCKLNDMNDDLPTLHHCPPVDPSTLPTMERLPMKTDIC 220
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592779422|gb|GAXK01175146.1| (TSA: Calanus finmarchicus comp2304_c3_seq13 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.460e+0 Identity = 18/68 (26.47%), Postives = 35/68 (51.47%), Query Frame = 0 Query: 74 LDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVL---TGIISRNLEKGIPIHTRLMNYLP 138 L+ I +SRKD + + D+ S W+ + S + +++ VL + +IS +L IP+ + + P Sbjct: 739 LEARIDHSRKDNNTVVDKQSPVDFWRHILTSHVLQSVPTCVLSRFSSLISNHLSPAIPLPQPKVTHTP 942
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592779423|gb|GAXK01175145.1| (TSA: Calanus finmarchicus comp2304_c3_seq12 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.468e+0 Identity = 18/68 (26.47%), Postives = 35/68 (51.47%), Query Frame = 0 Query: 74 LDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVL---TGIISRNLEKGIPIHTRLMNYLP 138 L+ I +SRKD + + D+ S W+ + S + +++ VL + +IS +L IP+ + + P Sbjct: 749 LEARIDHSRKDNNTVVDKQSPVDFWRHILTSHVLQSVPTCVLSRFSSLISNHLSPAIPLPQPKVTHTP 952
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592779424|gb|GAXK01175144.1| (TSA: Calanus finmarchicus comp2304_c3_seq11 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 1.482e+0 Identity = 18/68 (26.47%), Postives = 35/68 (51.47%), Query Frame = 0 Query: 74 LDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVL---TGIISRNLEKGIPIHTRLMNYLP 138 L+ I +SRKD + + D+ S W+ + S + +++ VL + +IS +L IP+ + + P Sbjct: 766 LEARIDHSRKDNNTVVDKQSPVDFWRHILTSHVLQSVPTCVLSRFSSLISNHLSPAIPLPQPKVTHTP 969
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592754350|gb|GAXK01200063.1| (TSA: Calanus finmarchicus comp3107457_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 3.050e+0 Identity = 30/110 (27.27%), Postives = 45/110 (40.91%), Query Frame = 0 Query: 48 DYTVKVLEDNNAYAIRKESPVGMMEDLDEFISYSRKDF---SMICDEHSGGSIWKKLNVSFLNENMELAVLTGIISRNLEKGIP----IHTRLMNYLPWILSITDDGKCE 150 DY K++E E DE I+ F + C SGG + + EN ++ VL GI+S + P ++ R+ NYL WI T G+C+ Sbjct: 195 DYQCKLMESKVKLLEHSECQESYPHAFDEDINSKICGFGNGTNTCKGDSGGPV-------VVEENGKI-VLVGIVSYGVAGCDPSQPMVYARVQNYLKWISERTLAGECK 500
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592803667|gb|GAXK01150901.1| (TSA: Calanus finmarchicus comp1995099_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.409e+0 Identity = 16/40 (40.00%), Postives = 20/40 (50.00%), Query Frame = 0 Query: 5 GDYLKQFCLTGQLIQAPGVHYDIQNSFKYMWGDSNVEIRE 44 GDYLK C G I V Y IQ+ K G + E+R+ Sbjct: 339 GDYLKLVCQDGTKISIQSVFYGIQSDDKSSCGGNETEVRK 458
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Match: gi|592850675|gb|GAXK01106869.1| (TSA: Calanus finmarchicus comp37086_c12_seq8 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 9.563e+0 Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0 Query: 189 PDFLNPDSETYKEWSSIFHNITQ----PLKDIENVERIVFFEFLLGP 231 PDFLN S+ + + IF N+T+ P I+N+E ++ + GP Sbjct: 216 PDFLNEASQLGEGYLKIFENLTRSLLSPPSSIQNLEAVIKKMEICGP 356
BLAST of EMLSAG00000001372 vs. L. salmonis peptides
Match: EMLSAP00000001372 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1230:197503:203063:1 gene:EMLSAG00000001372 transcript:EMLSAT00000001372 description:"augustus_masked-LSalAtl2s1230-processed-gene-1.8") HSP 1 Score: 891.723 bits (2303), Expect = 0.000e+0 Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0 Query: 1 MSLCGDYLKQFCLTGQLIQAPGVHYDIQNSFKYMWGDSNVEIREKNEDYTVKVLEDNNAYAIRKESPVGMMEDLDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVLTGIISRNLEKGIPIHTRLMNYLPWILSITDDGKCEAHKNDLYINKLNAEHFEESLGLTPQFYCNLKLNKRGWDPDFLNPDSETYKEWSSIFHNITQPLKDIENVERIVFFEFLLGPPSANISASFAIITTNKTNVFQLKKEIQTTEFTELQFLYIQNMINEVSFGVTSDHLDINWKWAGPELNITVKERSKTPLMKLSLGLSHDYGHLANMKRSFYQIYRAHINKKIKKGVVVNIREKGSISSLDSEIVVQDLSLVKKNDHWITTFSFQTKNVQNIGINKNGTFCFLMEVHQDIGSVLTNEKFPITSQHCFLDIE 430 MSLCGDYLKQFCLTGQLIQAPGVHYDIQNSFKYMWGDSNVEIREKNEDYTVKVLEDNNAYAIRKESPVGMMEDLDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVLTGIISRNLEKGIPIHTRLMNYLPWILSITDDGKCEAHKNDLYINKLNAEHFEESLGLTPQFYCNLKLNKRGWDPDFLNPDSETYKEWSSIFHNITQPLKDIENVERIVFFEFLLGPPSANISASFAIITTNKTNVFQLKKEIQTTEFTELQFLYIQNMINEVSFGVTSDHLDINWKWAGPELNITVKERSKTPLMKLSLGLSHDYGHLANMKRSFYQIYRAHINKKIKKGVVVNIREKGSISSLDSEIVVQDLSLVKKNDHWITTFSFQTKNVQNIGINKNGTFCFLMEVHQDIGSVLTNEKFPITSQHCFLDIE Sbjct: 1 MSLCGDYLKQFCLTGQLIQAPGVHYDIQNSFKYMWGDSNVEIREKNEDYTVKVLEDNNAYAIRKESPVGMMEDLDEFISYSRKDFSMICDEHSGGSIWKKLNVSFLNENMELAVLTGIISRNLEKGIPIHTRLMNYLPWILSITDDGKCEAHKNDLYINKLNAEHFEESLGLTPQFYCNLKLNKRGWDPDFLNPDSETYKEWSSIFHNITQPLKDIENVERIVFFEFLLGPPSANISASFAIITTNKTNVFQLKKEIQTTEFTELQFLYIQNMINEVSFGVTSDHLDINWKWAGPELNITVKERSKTPLMKLSLGLSHDYGHLANMKRSFYQIYRAHINKKIKKGVVVNIREKGSISSLDSEIVVQDLSLVKKNDHWITTFSFQTKNVQNIGINKNGTFCFLMEVHQDIGSVLTNEKFPITSQHCFLDIE 430
BLAST of EMLSAG00000001372 vs. L. salmonis peptides
Match: EMLSAP00000005513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:254011:256532:1 gene:EMLSAG00000005513 transcript:EMLSAT00000005513 description:"maker-LSalAtl2s297-augustus-gene-2.21") HSP 1 Score: 70.8626 bits (172), Expect = 3.843e-14 Identity = 56/225 (24.89%), Postives = 104/225 (46.22%), Query Frame = 0 Query: 175 QFYCNLKLNKRGWDPDFLNPDSETYKEWSSIFHNITQPLKDIENV---ERIVFFEFLLGPPSANISASFAIITTNKTNVFQLKKEIQTTEFTELQFLYIQNMINEVSFGVTSDHLDINWKWAGP--ELNITVKERSKTPLMKLSLGLSHDYGHLANMKRSFYQIYRAHINKKIKKGVVVNIREKGSISSLDSEIVVQDLSLVKKNDH--WITTFSFQTKNVQNIG 392 +F +L W +P S E+S +FH + +K E + + +F EF G ++ + A+I+ + +LK+ ++ T + +++ M + +G ++HL ++W W E+ IT+K+ K+P +G+S + GHL S +Y ++K KK + I + GSI E+ V + K DH W F F+T ++ +G Sbjct: 10 EFMVIQELKNEIWTSKLNSPRS---FEFSRLFHRLNPKIKRFEAISIIRKAIFLEFREGEKNSAVLL-VALISNKRMKPSKLKEILEVTLDETEESFHVELMPIAIRYGTGTNHLQMSWTWDDQDNEMIITLKQGMKSPYGWAGVGISSEKGHLIKAPISALHMYLGFVSKLSKKENFIIINKSGSIDFTSEEVNVLSSKVQKMKDHKGWELIFKFKTHGIRELG 230 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001372 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001372 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000001372 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001372 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001372 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001372 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001372 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1230:197503..203063+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001372-684138 ID=EMLSAG00000001372-684138|Name=EMLSAG00000001372|organism=Lepeophtheirus salmonis|type=gene|length=5561bp|location=Sequence derived from alignment at LSalAtl2s1230:197503..203063+ (Lepeophtheirus salmonis)back to top Add to Basket
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