EMLSAG00000001384, EMLSAG00000001384-684150 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Gamma-aminobutyric acid receptor subunit beta-2" species:9913 "Bos taurus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 GO:GO:0007165 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 eggNOG:NOG77438 UniGene:Bt.63930 ProteinModelPortal:P0C2W5 SMR:P0C2W5 STRING:9913.ENSBTAP00000024736 PRIDE:P0C2W5 Uniprot:P0C2W5) HSP 1 Score: 49.2914 bits (116), Expect = 4.776e-6 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 406 LPRHSFWRNALERHVAQKKSRLRERASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 471
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:gabrb3 "gamma-aminobutyric acid (GABA) A receptor, beta 3" species:7955 "Danio rerio" [GO:0005216 "ion channel activity" evidence=IEA] [GO:0006811 "ion transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 ZFIN:ZDB-GENE-101102-2 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 TreeFam:TF315453 GeneTree:ENSGT00630000089685 KO:K05181 OrthoDB:EOG712TVZ CTD:2562 OMA:MNEVTGS EMBL:BX927286 EMBL:CR405707 RefSeq:XP_005166136.1 UniGene:Dr.39594 ProteinModelPortal:E7EXG0 Ensembl:ENSDART00000087300 GeneID:566922 KEGG:dre:566922 Uniprot:E7EXG0) HSP 1 Score: 48.521 bits (114), Expect = 8.818e-6 Identity = 50/193 (25.91%), Postives = 82/193 (42.49%), Query Frame = 0 Query: 1 MVFGALAEYAFI----------LQKSISNK-----NKRQEYDQEMARENSGMLR-RTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQ------IVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 VF AL EYAF+ +QK ++ K N R +YD + + G + +V + + G R+ GV G+ E+ ++T+ E + + DN+G Y R++M + + R S + IP LT+ IDR + IFP F++FN+ YW+YY+ Sbjct: 350 FVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEKANNDRNKYDGNKSVQEGGNCKPSSVKQSNQVQG-----HRHSRGVDSQGNILLTTLEIHNEVAGNEITTSVSEARNSTSMVFDNSG-----IQY-RKQSTARHSMDRNAQSKKPRLRRRSSQLKIKIPDLTDVNAIDRWSRIIFPAVFSLFNLIYWLYYV 531
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:si:dkey-192o1.3 "si:dkey-192o1.3" species:7955 "Danio rerio" [GO:0006811 "ion transport" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 Pfam:PF02932 PRINTS:PR00253 ZFIN:ZDB-GENE-081104-346 GO:GO:0016021 PANTHER:PTHR18945 SUPFAM:SSF90112 GO:GO:0006811 GeneTree:ENSGT00540000070314 TreeFam:TF315453 OrthoDB:EOG712TVZ EMBL:CU151895 Ensembl:ENSDART00000131086 OMA:CEENEAV Uniprot:F1QEK1) HSP 1 Score: 47.7506 bits (112), Expect = 9.878e-6 Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 0 Query: 129 SRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYLAF 172 SRR+A + ++ NP +IDR A +FP++F + NI YW+YYL F Sbjct: 181 SRRAA--SMMSVENPHNIDRHARILFPMAFLLINIFYWLYYLLF 222
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0007605 "sensory perception of sound" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060384 "innervation" evidence=IEA] [GO:0090102 "cochlea development" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02932 PRINTS:PR00253 PRINTS:PR01160 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 GO:GO:0043524 GO:GO:0007605 GO:GO:0060119 GO:GO:0090102 TreeFam:TF315453 GO:GO:0060384 GeneTree:ENSGT00630000089685 EMBL:AAEX03003043 EMBL:AAEX03003044 EMBL:AAEX03003045 Ensembl:ENSCAFT00000027322 Uniprot:F1PKC7) HSP 1 Score: 47.7506 bits (112), Expect = 1.242e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 248 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 313
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Gamma-aminobutyric acid receptor subunit beta-2" species:9913 "Bos taurus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0007605 "sensory perception of sound" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060384 "innervation" evidence=IEA] [GO:0090102 "cochlea development" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0043524 GO:GO:0007605 GO:GO:0060119 GO:GO:0090102 TreeFam:TF315453 GO:GO:0060384 GeneTree:ENSGT00630000089685 OrthoDB:EOG712TVZ OMA:TSSIQYR EMBL:DAAA02020899 EMBL:DAAA02020900 EMBL:DAAA02020901 EMBL:DAAA02020902 EMBL:DAAA02020903 EMBL:DAAA02020904 EMBL:DAAA02020905 ProteinModelPortal:E1BFC0 BindingDB:E1BFC0 Ensembl:ENSBTAT00000024736 Uniprot:E1BFC0) HSP 1 Score: 47.7506 bits (112), Expect = 1.521e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 453 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 518
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:mod-1 "Protein MOD-1, isoform b" species:6239 "Caenorhabditis elegans" [GO:0004993 "serotonin receptor activity" evidence=IDA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA] [GO:0005254 "chloride channel activity" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005887 "integral component of plasma membrane" evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0006811 "ion transport" evidence=IEA] [GO:0006821 "chloride transport" evidence=IDA] [GO:0007210 "serotonin receptor signaling pathway" evidence=IMP;IDA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034220 "ion transmembrane transport" evidence=IEA;IDA] [GO:0042595 "behavioral response to starvation" evidence=IMP] [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0045202 "synapse" evidence=IEA] [GO:1902476 "chloride transmembrane transport" evidence=IDA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 InterPro:IPR018000 GO:GO:0005887 GO:GO:0004993 GO:GO:0043025 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0005254 GO:GO:0042595 GeneTree:ENSGT00540000070314 EMBL:FO081551 HOGENOM:HOG000016259 UniGene:Cel.8029 GeneID:179269 KEGG:cel:CELE_K06C4.6 CTD:179269 RefSeq:NP_001024034.1 ProteinModelPortal:Q8MPU3 SMR:Q8MPU3 EnsemblMetazoa:K06C4.6b.1 EnsemblMetazoa:K06C4.6b.2 UCSC:K06C4.6a WormBase:K06C4.6b NextBio:904636 ArrayExpress:Q8MPU3 Uniprot:Q8MPU3) HSP 1 Score: 47.7506 bits (112), Expect = 1.526e-5 Identity = 46/180 (25.56%), Postives = 77/180 (42.78%), Query Frame = 0 Query: 1 MVFGALAEYAFIL-----QKSISNKNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLT----NPQDIDRTALKIFPISFTIFNIGYWMYYLA 171 VFG + E AF+ Q S+ N +R+E + +G R + G VI + NG +G+ + D P+ T GS+ NG P L M++ + L+ RS P P+ +P+ +D+ ++ FP++FT+FN+ YW +YL+ Sbjct: 312 FVFGTMVELAFVCYISRCQNSVRNAERRRERMRNSQVWANGSCRTRSNGYANGGSVISHYHPTSNG---NGNNNRHD--------TPQVTGRGSL---HRNG----------PPSPLNLQMTTFDSEIPLTFDQMRSTSPPPPSGCLARFHPEAVDKFSIVAFPLAFTMFNLVYWWHYLS 467
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Gamma-aminobutyric acid receptor subunit beta-2" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00253 PRINTS:PR01160 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 HOVERGEN:HBG051707 HOGENOM:HOG000231335 UniGene:Hs.303527 HGNC:HGNC:4082 EMBL:AC008712 EMBL:AC022120 EMBL:AC091882 EMBL:AC091989 EMBL:AK294437 ProteinModelPortal:B7Z279 SMR:B7Z279 Ensembl:ENST00000517547 UCSC:uc011deh.1 NextBio:35478928 ArrayExpress:B7Z279 Uniprot:B7Z279) HSP 1 Score: 47.3654 bits (111), Expect = 1.545e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 248 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 313
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0007605 "sensory perception of sound" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0060119 "inner ear receptor cell development" evidence=IEA] [GO:0060384 "innervation" evidence=IEA] [GO:0090102 "cochlea development" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 HOVERGEN:HBG051707 eggNOG:NOG77438 GeneTree:ENSGT00630000089685 HOGENOM:HOG000231335 EMBL:AADN03006667 EMBL:AADN03006616 ProteinModelPortal:F6SVX7 Ensembl:ENSGALT00000002584 Uniprot:F6SVX7) HSP 1 Score: 47.3654 bits (111), Expect = 1.614e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 408 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 473
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Gamma-aminobutyric acid receptor subunit beta-2" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 HGNC:HGNC:4082 EMBL:AC008712 EMBL:AC022120 EMBL:AC091882 EMBL:AC091989 ProteinModelPortal:E7EV50 SMR:E7EV50 Ensembl:ENST00000517901 NextBio:35500590 ArrayExpress:E7EV50 Bgee:E7EV50 Uniprot:E7EV50) HSP 1 Score: 47.3654 bits (111), Expect = 1.617e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 345 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 410
BLAST of EMLSAG00000001384 vs. GO
Match: - (symbol:GABRB2 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR002289 InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01160 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GeneTree:ENSGT00630000089685 KO:K05181 OrthoDB:EOG712TVZ CTD:2561 OMA:TSSIQYR EMBL:AAEX03003043 EMBL:AAEX03003044 EMBL:AAEX03003045 RefSeq:XP_867070.1 ProteinModelPortal:L7N0C0 Ensembl:ENSCAFT00000015972 GeneID:489146 KEGG:cfa:489146 Uniprot:L7N0C0) HSP 1 Score: 47.3654 bits (111), Expect = 1.806e-5 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0 Query: 106 LPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 LP H RN + +A + R S + IP LT+ IDR + FP+ F+ FNI YW+YY+ Sbjct: 408 LPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 473
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592810977|gb|GAXK01143591.1| (TSA: Calanus finmarchicus comp525777_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.599e-5 Identity = 44/180 (24.44%), Postives = 67/180 (37.22%), Query Frame = 0 Query: 2 VFGALAEYAFILQKSISN---------KNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYLAF 172 VFG LAEYA IL K I N K +++E ++M + + + + PG +++ D E IV R+ H G + +N Y ++++N L V D+ A+ +FP F IFN+ YW YYL F Sbjct: 1400 VFGVLAEYALIL-KMIQNIKRNEVAERKKEQKELQRQMEFDQLNLYKPPEHSEPGKQCLVKG-----------------DGETSIVKNGNRDDHSGKGQDLQSN------RLYRQIKKDMKNEKHKQLQELV----------------------DKVAMYLFPCIFIIFNLIYWPYYLIF 1801
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592957244|gb|GAXK01001312.1| (TSA: Calanus finmarchicus comp660351_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 2.737e-5 Identity = 50/174 (28.74%), Postives = 73/174 (41.95%), Query Frame = 0 Query: 2 VFGALAEYAFILQKSISNKNKRQEYDQEMARENSGMLRRTVDTT-----PGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 VFG LAEYA IL K I ++ +R D + R +L + T+ P +IR R+M G G SS +E + T P + DN + H+E+ ++ H R S V + +DR A+ +FP F +FN+ YW YYL Sbjct: 252 VFGVLAEYALIL-KIIQSEKRR---DAKARRAFLKVLNNSNGTSNHTEKPNKKSIIR---RDMGG---SGVCSSSMQE--VFETEPLQQ--------DNQVNL--------KHQEIDRQWTN---------HQRDSRCVREKIQMAYERVDRVAMYLFPAIFFVFNMLYWTYYL 662
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910197|gb|GAXK01048178.1| (TSA: Calanus finmarchicus comp677677_c1_seq3 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 1.492e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 278 IDELSRAIFPLGFAVFNLSYWLYYLA 355
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910198|gb|GAXK01048177.1| (TSA: Calanus finmarchicus comp677677_c1_seq2 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 1.820e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 337 IDELSRAIFPLGFAVFNLSYWLYYLA 414
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910199|gb|GAXK01048176.1| (TSA: Calanus finmarchicus comp677677_c1_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 1.831e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 337 IDELSRAIFPLGFAVFNLSYWLYYLA 414
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910194|gb|GAXK01048181.1| (TSA: Calanus finmarchicus comp677677_c1_seq6 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.935e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 278 IDELSRAIFPLGFAVFNLSYWLYYLA 355
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910196|gb|GAXK01048179.1| (TSA: Calanus finmarchicus comp677677_c1_seq4 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.992e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 337 IDELSRAIFPLGFAVFNLSYWLYYLA 414
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910195|gb|GAXK01048180.1| (TSA: Calanus finmarchicus comp677677_c1_seq5 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 2.009e-3 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 ID + IFP+ F +FN+ YW+YYLA Sbjct: 278 IDELSRAIFPLGFAVFNLSYWLYYLA 355
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910189|gb|GAXK01048186.1| (TSA: Calanus finmarchicus comp677677_c1_seq11 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 2.344e-3 Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 +D + IFP+ F +FN+ YW+YYLA Sbjct: 278 MDEVSRVIFPLGFAVFNLSYWLYYLA 355
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Match: gi|592910191|gb|GAXK01048184.1| (TSA: Calanus finmarchicus comp677677_c1_seq9 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 2.681e-3 Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 146 IDRTALKIFPISFTIFNIGYWMYYLA 171 +D + IFP+ F +FN+ YW+YYLA Sbjct: 337 MDEVSRVIFPLGFAVFNLSYWLYYLA 414
BLAST of EMLSAG00000001384 vs. L. salmonis peptides
Match: EMLSAP00000001384 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1232:822:19812:1 gene:EMLSAG00000001384 transcript:EMLSAT00000001384 description:"maker-LSalAtl2s1232-snap-gene-0.13") HSP 1 Score: 360.147 bits (923), Expect = 3.523e-128 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 Query: 1 MVFGALAEYAFILQKSISNKNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYLAF 172 MVFGALAEYAFILQKSISNKNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYLAF Sbjct: 1 MVFGALAEYAFILQKSISNKNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAFVPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYLAF 172
BLAST of EMLSAG00000001384 vs. nr
Match: gi|657574198|ref|XP_008290796.1| (PREDICTED: gamma-aminobutyric acid receptor subunit beta-3 isoform X3 [Stegastes partitus]) HSP 1 Score: 57.7658 bits (138), Expect = 9.914e-7 Identity = 50/180 (27.78%), Postives = 82/180 (45.56%), Query Frame = 0 Query: 2 VFGALAEYAFI----------LQKSISNKNKRQEYDQEMARENSGMLRRTVDTTPGLGGVIRNRKRNMNGVSIDGSFSSDDKELQIVSTNPRETHHGSIGAVDNNGDCLDMANYLPPHEELRNNMSSTLATSVLSIHSRRSAF-VPIPTLTNPQDIDRTALKIFPISFTIFNIGYWMYYL 170 VF AL EYAF+ +QK ++ K ++ D++ R + R +VD+ G ++ + + I ++ ++T ETH+ S DN+G + P E R +M + R S + IP LT+ IDR + IFP SF++FN+ YW+YY+ Sbjct: 296 VFLALLEYAFVNYIFFGRGPQMQKKLAEKAQKANNDRKGRRHSR---RVSVDSQ---GNIL------LTTLEIHNEVGGNE-----ITTTVSETHNSSSMMFDNSG--VQYRKPSTPQESGRLSMDRNAHLKKTRLRRRSSQLKIKIPDLTDVNAIDRWSRIIFPFSFSLFNLIYWLYYV 456 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001384 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000001384 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000001384 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001384 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001384 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001384 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000001384 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1232:822..19812+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001384-684150 ID=EMLSAG00000001384-684150|Name=EMLSAG00000001384|organism=Lepeophtheirus salmonis|type=gene|length=18991bp|location=Sequence derived from alignment at LSalAtl2s1232:822..19812+ (Lepeophtheirus salmonis)back to top Add to Basket
|