EMLSAG00000001430, EMLSAG00000001430-684196 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001430
Unique NameEMLSAG00000001430-684196
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001430 vs. C. finmarchicus
Match: gi|592762388|gb|GAXK01192025.1| (TSA: Calanus finmarchicus comp41721_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.329e+0
Identity = 22/54 (40.74%), Postives = 30/54 (55.56%), Query Frame = 0 
Query:    4 SKELFDLLLSKVGLKISSRERSRHDYESITTNDIDLNIRYIESGDSQVSCFYIY 57
            SKE FD  +  VG+KIS ++R     +SI      L I+YI +   QVS F I+
Sbjct:  269 SKEEFDTKVPCVGVKISGKQRLNLWTQSIP---FSLYIKYI-TIKIQVSLFSIH 418
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BLAST of EMLSAG00000001430 vs. C. finmarchicus
Match: gi|592945812|gb|GAXK01012741.1| (TSA: Calanus finmarchicus comp441892_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.733e+0
Identity = 20/54 (37.04%), Postives = 27/54 (50.00%), Query Frame = 0 
Query:    9 DLLLSKVGLKISSRERSRHDYESITTNDIDLNIRYI------ESGDSQVSCFYI 56
            DL+ S + L  SS+      +E   +NDIDLN  YI      E   S+V CF +
Sbjct: 1162 DLVSSNLNLN-SSQFCLADQWEGDVSNDIDLNSEYIVVGLSCEPCKSKVGCFLL 1320
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BLAST of EMLSAG00000001430 vs. L. salmonis peptides
Match: EMLSAP00000001430 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:189300:191520:1 gene:EMLSAG00000001430 transcript:EMLSAT00000001430 description:"maker-LSalAtl2s1244-augustus-gene-0.34")

HSP 1 Score: 115.546 bits (288), Expect = 2.007e-35
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 
Query:    1 MKMSKELFDLLLSKVGLKISSRERSRHDYESITTNDIDLNIRYIESGDSQVSCFYIY 57
            MKMSKELFDLLLSKVGLKISSRERSRHDYESITTNDIDLNIRYIESGDSQVSCFYIY
Sbjct:    1 MKMSKELFDLLLSKVGLKISSRERSRHDYESITTNDIDLNIRYIESGDSQVSCFYIY 57
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001430 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001430 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592762388|gb|GAXK01192025.1|2.329e+040.74TSA: Calanus finmarchicus comp41721_c2_seq1 transc... [more]
gi|592945812|gb|GAXK01012741.1|7.733e+037.04TSA: Calanus finmarchicus comp441892_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001430 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000014302.007e-35100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:1893... [more]
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BLAST of EMLSAG00000001430 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001430 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001430 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001430 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1244supercontigLSalAtl2s1244:189300..191520 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1244-augustus-gene-0.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001430 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001430EMLSAT00000001430-697277Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1244:189300..191520+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001430-684196 ID=EMLSAG00000001430-684196|Name=EMLSAG00000001430|organism=Lepeophtheirus salmonis|type=gene|length=2221bp|location=Sequence derived from alignment at LSalAtl2s1244:189300..191520+ (Lepeophtheirus salmonis)
TAATATTTATGATAGAATAAGCATTATTACTTAGCATCTGAAGAGAATTC
AATACATTTGATTATTGATCAAAGCAAGTGTAAAAAGACAGTATAGTGTT
AANTAGATTATTTATAGAATAAATAGGAATGYTCATTAGGATATTTATTA
CATTTTTTTGTAATTTATAAGCCAATAGGAGTTAAATTGCTTCATCCAAG
TTGTTAATTACTATTTCTGAATTAAGGTGAGTTACCACATCTATCGAGAA
TGTGTAAATATACGGGTATAAGTTTGTAAAGGACTTAAAGACAATAGCTT
AAAAAATTTCTATATTATAATCTTCAAACCTAATCAATTATTGATATCAA
CATCAAGAGATTCTGTCGTTTATAATGAACTCTGTTTAGGGGAGAGAAAA
TACACACACATACAAATATATATTTAAATTTGAATTGACATATAAAATAT
AATTTTAAATTAATTGAAAATAAATTTTGAAAGCTCTGGAGATGAATTTG
ACATCATAAGGACTATAAGAAATATTTATAATAATGAGAATACGATTTAA
TCGAATGATCTTTCATTATTTACTTGTAGGTTAAGTATATTTTCTAAATG
GAAGGAGCAAAGGGCTTTCGACAATATTATTCGGGAAATCAAATTGTATA
AGCCAGAGTCTTATCATAATTTTATGAAGATGTCAAAAGAATTGTTTGAT
TTATTACTATCTAAAGTAATCATCTAATATATACCTTATAACAATTACTT
ACTATTTATAATTAATTGATAGGTTGGTCTCAAAATTTCCAGCAGAGAAC
GTTCTCGGCATGATTATGAATCAATTACTACTAATGACATTGATCTTAAC
ATTAGATACATCGAATCTGGGGATTCTCAAGTATCTTGTTTTTATATTTA
TTAATTATTAATGATCTTTTAATTATTTTAATATTTTTTTTGATACGTCA
AATGTCATATAGCTTCCGAATTAATAAAAAATCTGTCATTGAAATTGTAC
ATAATACATCCAACGCTATCTGGGAAGCTCTTGTGGTAAAATTAACAATA
AATTAAAGTAACATAATTATTTTTTTGTAAGGATGAATATTTTAAAGCTT
CTATCTAAGATGATTGGCTATCAATTAGTAAAGAATATGAAGAGCAGTGG
AATTCTCCTAATTGTAGTGGTAAGTTTCATTATATATATAAATTTATAAT
TATTTAATTTAATATTAAAGGTACAATAGATGAAAAGCATATATGGATAC
AAGCACCAATTATTTCTGGATCAGAGTAATTTAATTGTAAGGGGTTTCAT
TTCATTATGTTATTGGGCATTTGCAGGCTTTTGAAAGGAATGAAAAATTG
AACGGCGTTCCATGGAACGTTAGTTCAATGAACTGAATTGACTTTTTTTA
TTTTTTTGAACAATAAATGCTAAAAATGAGATTTAGCGTTCTGTTCCAAT
AGGTCATAGTAATTTCCTATTATTGTCAACACATAAATATTAACAATATT
TTTTAAATAATTTGTTACTTTATTGCCCCATTTCTATTCTTTAGATTTCG
TGCCAAAGTTATCTATTTATCGTTTATGCTCACTAAGAAGTTATGAGTAC
ACTTCCTGTAATGATGTGTTTGATGTTCTCTAAGAAACGATATATTTTGT
TTTGCATAAATTTACAGAATATAATATATATTTTTAAAGTTATAAATAGG
GAAGTTATATATTAATAATATACAACAATCCTTCTTCCTTCATGTGTGTA
AATAAATAAATAATTTAAGTTTATAACTAATTATATATATATTCTCAAGG
ATACTCTTTTAATTGGGTTGGAATCGATATTTACTTTGAACTCTTGATCC
AGCGTCAGATACAATTACACCACTTTTATATGTAGCTATTATATTTTTGA
AGTAATTTCCATGGACATTCATGAGTAATTTATTCAGTTCAAATGTTTGA
ATAGAGTTGATGATCGAAATAGAGTTTTCTTTTAGACACCTGCATACTCT
TACATAGTGGCCTCTCTTACAACACAGTAACTTCCTCGAGAAGTATAAGT
ACTTCGACCAAATTTAAGACTATTTCTCCCTTAGACTTAGATTGTCTTGA
CAGATTTTTCTTTATCTAAGTTGTTTTACGTCCCCATGTTAGGAATGCAC
AACCACAACCTCATGCAAAAATTATTATAATTTGCATTTAATTTACACAC
ATACTATTTACAATTTGTTAT
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