EMLSAG00000001432, EMLSAG00000001432-684198 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001432
Unique NameEMLSAG00000001432-684198
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001432 vs. C. finmarchicus
Match: gi|592934241|gb|GAXK01024312.1| (TSA: Calanus finmarchicus comp484260_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.102e+0
Identity = 19/73 (26.03%), Postives = 34/73 (46.58%), Query Frame = 0 
Query:    6 LYLKSWKSSQHSNPKP----FNGKDIHNLWLQNRYKIAFTITPTCVILVCTIIGALIKTQTLLFSKKCLSNII 74
            LY   ++   H+NP+P    +N +D H+ W     +   T +P  +++    +   I   T+L   K  SNI+
Sbjct:   49 LYQDDYQEDDHANPQPTHQIWNSRD-HDEW*NKAVRHNPTKSPNILLIPPWKLKK*ITP*TVLLHSKVFSNIM 264
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BLAST of EMLSAG00000001432 vs. L. salmonis peptides
Match: EMLSAP00000001432 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:23994:24255:-1 gene:EMLSAG00000001432 transcript:EMLSAT00000001432 description:"maker-LSalAtl2s1244-snap-gene-0.47")

HSP 1 Score: 166.777 bits (421), Expect = 7.597e-55
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MKEMHLYLKSWKSSQHSNPKPFNGKDIHNLWLQNRYKIAFTITPTCVILVCTIIGALIKTQTLLFSKKCLSNIILRIWIHF 81
            MKEMHLYLKSWKSSQHSNPKPFNGKDIHNLWLQNRYKIAFTITPTCVILVCTIIGALIKTQTLLFSKKCLSNIILRIWIHF
Sbjct:    1 MKEMHLYLKSWKSSQHSNPKPFNGKDIHNLWLQNRYKIAFTITPTCVILVCTIIGALIKTQTLLFSKKCLSNIILRIWIHF 81
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001432 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001432 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592934241|gb|GAXK01024312.1|3.102e+026.03TSA: Calanus finmarchicus comp484260_c1_seq4 trans... [more]
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BLAST of EMLSAG00000001432 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000014327.597e-55100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:2399... [more]
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BLAST of EMLSAG00000001432 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001432 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001432 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001432 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1244supercontigLSalAtl2s1244:23994..24255 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1244-snap-gene-0.47
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001432 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001432EMLSAT00000001432-697279Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1244:23994..24255-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001432-684198 ID=EMLSAG00000001432-684198|Name=EMLSAG00000001432|organism=Lepeophtheirus salmonis|type=gene|length=262bp|location=Sequence derived from alignment at LSalAtl2s1244:23994..24255- (Lepeophtheirus salmonis)
ATGAAAGAAATGCACCTGTACTTGAAATCATGGAAAAGTTCCCAACATTC
AAATCCTAAGCGTTGATTTAACCTAAGCTTTTAATGGAAAGGACATTCAT
AATCTTTGGCTCCAAAACAGATACAAAATAGCGTTCACTATAACTCCTAC
ATGTGTGATATTGGTTTGTACAATTATAGGGGCACTTATTAAGACTCAAA
CGTTATTGTTCTCAAAGAAATGCCTCTCAAATATAATTTTGAGAATATGG
ATCCATTTTTAA
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