EMLSAG00000001433, EMLSAG00000001433-684199 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001433
Unique NameEMLSAG00000001433-684199
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001433 vs. C. finmarchicus
Match: gi|592815160|gb|GAXK01139408.1| (TSA: Calanus finmarchicus comp879392_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.089e-2
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 0 
Query:   78 EKTSRLLMKSECRSAGGRRKNGSSLVHSIPKFSEV-KKGKLSEVQKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSISNLSQKNSSLDASNLLQNMMYKHKSGYSNKTFSPLA-KVRRGRKPDKREITHV 218
            +  S+L+MK+   S G R+K   +L+HSIPKFS+V    +L+EVQ+VLQ RLL K+   +Q                             ++ S  N    AS++LQ+M+    S   +KT + L  K RRGRKP K +I H+
Sbjct:  327 DGVSKLVMKN--ISQGTRKK---ALIHSIPKFSQVLPNQQLAEVQRVLQERLLKKKVRTEQD----------------------------AHASNNNVDRRASDILQSMV--DMSQLVDKTGTKLKHKPRRGRKPHKNDIYHL 650
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BLAST of EMLSAG00000001433 vs. L. salmonis peptides
Match: EMLSAP00000001433 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:57424:64784:-1 gene:EMLSAG00000001433 transcript:EMLSAT00000001433 description:"maker-LSalAtl2s1244-snap-gene-0.48")

HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0 
Query:    1 MECEDMSIESGSGQNVVEELTITPLPPLPKLRLRPGLFHSSSKLDVKPPFKYEEKTKSSSSSKEIEKVRCKVENEEEEKTSRLLMKSECRSAGGRRKNGSSLVHSIPKFSEVKKGKLSEVQKVLQSRLLSKQRLKQQQQLLRQQQQFQQQQREEEEEQFEQEPPSISNLSQKNSSLDASNLLQNMMYKHKSGYSNKTFSPLAKVRRGRKPDKREITHVLKVNAPPLSYPILPHLSEVTITPKVIYNPNPRHIHYNHNVEEALDLRTPGRCSPPPESYTSNTFTFKSKEDSNQQAALVKRKLSNLLPISSSLFSDFNSEATIQKFNFTPGDYLCLEEQEAPIQYILDPEKRRQELLLDNG 359
            MECEDMSIESGSGQNVVEELTITPLPPLPKLRLRPGLFHSSSKLDVKPPFKYEEKTKSSSSSKEIEKVRCKVENEEEEKTSRLLMKSECRSAGGRRKNGSSLVHSIPKFSEVKKGKLSEVQKVLQSRLLSKQRLKQQQQLLRQQQQFQQQQREEEEEQFEQEPPSISNLSQKNSSLDASNLLQNMMYKHKSGYSNKTFSPLAKVRRGRKPDKREITHVLKVNAPPLSYPILPHLSEVTITPKVIYNPNPRHIHYNHNVEEALDLRTPGRCSPPPESYTSNTFTFKSKEDSNQQAALVKRKLSNLLPISSSLFSDFNSEATIQKFNFTPGDYLCLEEQEAPIQYILDPEKRRQELLLDNG
Sbjct:    1 MECEDMSIESGSGQNVVEELTITPLPPLPKLRLRPGLFHSSSKLDVKPPFKYEEKTKSSSSSKEIEKVRCKVENEEEEKTSRLLMKSECRSAGGRRKNGSSLVHSIPKFSEVKKGKLSEVQKVLQSRLLSKQRLKQQQQLLRQQQQFQQQQREEEEEQFEQEPPSISNLSQKNSSLDASNLLQNMMYKHKSGYSNKTFSPLAKVRRGRKPDKREITHVLKVNAPPLSYPILPHLSEVTITPKVIYNPNPRHIHYNHNVEEALDLRTPGRCSPPPESYTSNTFTFKSKEDSNQQAALVKRKLSNLLPISSSLFSDFNSEATIQKFNFTPGDYLCLEEQEAPIQYILDPEKRRQELLLDNG 359
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001433 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001433 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592815160|gb|GAXK01139408.1|2.089e-234.97TSA: Calanus finmarchicus comp879392_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001433 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000014330.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:5742... [more]
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BLAST of EMLSAG00000001433 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001433 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001433 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001433 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1244supercontigLSalAtl2s1244:57424..64784 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1244-snap-gene-0.48
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001433 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001433EMLSAT00000001433-697280Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1244:57424..64784-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001433-684199 ID=EMLSAG00000001433-684199|Name=EMLSAG00000001433|organism=Lepeophtheirus salmonis|type=gene|length=7361bp|location=Sequence derived from alignment at LSalAtl2s1244:57424..64784- (Lepeophtheirus salmonis)
ATGGAGGTGAGAGCTTAAAGGTAAAAAATATCAAAATATAGACATATTTT
TATCTGTAATTTACTTATATAGAAAGGAATATATCCTAACTAAGGTTTTA
CATACTCATGAAAAAAGGAAATTGACAGTATACAGTTTCCTTGTTTATTA
AGTAAGTTTCCCCACTAAGAAATATTTTATATGGTATTGTGTTCCGGATA
CTGGCTAGACCACTCCATGACTTTAATGCACTTGAGGSACTCCTTTGTTG
TTTAGACCGTATATTTTGTGTCATTGGTGTACWAGAAGAATCATTATACA
AGCCATTTTCAGTACCCCTGCCCTGAAGGAATGAGGTTGTCGTACAATAT
TTCAACGATAAATGCCTCAATCCATTTTCCCTTCGATGACGTGCAGTCGT
CCTTTAGCAGAAAAACGCCCTCTAGACATCATGTTTCCGTAATTGGGAAG
AAAGGCTGACTACAAACTGATTTTGGTCCTTTTTTCTGCCTATAGTTATT
CGATGGGAAGAGAGGTTGCATGATATAATAAAGATAACCAGGGGACTTAC
AAAGAAAATACAACTTAACTCCTTATAAATATAGTACATAGATTGTTGTA
TCAAAGTTAGATAAACTCGGGATAATACATAGTGTCCTTCCACGAATCAT
ACATTGACACTGTCCCTATTGATGTACTGTTCTACGTATTTACTTGCCTG
TTAGAAGTTAACATAATAATTAAGGCCTATACAAGCATGTAAGTATTCCA
TACAGGTGATTATGTATCTCCTTAACACTATGTATTAAGGAATTCATAGG
TTTGAATTAATACCTATGTATGTAGTATGTGCCTATCCTACTTTATTGTT
TCCCCTCTTTCTCATGTCTCCTCAATTAAAAATTCGCCAAATACTTTTTT
TTTGCTTGTCCAACAATCTATATCTACCGCCCTTATCTTCAAATATATGT
AGATATTACATGATATATAGTACAAATACATCAAAGCAATATAATATAAT
ACTAAAACTTTCAATTTACAATAGAAAAAAAAGAACAGATTTGAAGGAAA
GCACCTATGTACTCGTATTAGTTATGAACGTATCTTGTACATACATACAT
ATGAAAATACGTTTTGAAAGCTAATGTCAGTTTTAAATTGAATTATACAC
ATATATGTATGTCTATTAGTACAAAAACATACACACACGCGTGGGTCTTT
CACAGTAGCATTAAGGCTTGTAGTAGATAATGCATGTATTTTTAGCGTGA
GAATGACTTACAAGTAAAAATATAGAATTTTGAGAATTGATCATCAGTTA
AAATTGAATGCAAATCCGTGTGTGGTTCGAAAAAAAAAGAAAAAAAGAAT
TGAGCATCCCATAATAACAGCTCATACTCCATTGGTTCTACATGACGTCA
TTATCCATGAGGTTCATTCTGATTTGAAAAGTGTCAGGATAAGGAAAAAC
ATAATTGCATCGTATTCATGTAAGTTATTATTTGTGTCCTTTTTTGAAAG
AACCTTTTGGGGCTATTTTTTACCCCATTTAAAAAAGCCTATTTCCTCTT
GAGGTTTGTGTGTGTGACTTTGAACTCTTGAGCTTGTGAATAACAAAAAC
GCAGTTATTTCAATTAGTTATGAGTGCGCCAAATGTTTCTTGATATAATA
TTTTGATATTATTATTTATACATTTATTTAAGAGAGTCACATTCCTGTCC
TTAGAGTACTCATACTCAGTAATACGTGTCGCACATACTCATATTTACTA
ACAACTATATGTATAATGTGTAAATGTATTTAAAACATCAAGGGTGTTCA
AAATAATTTGTGTCATTTTTAAAATTTTATTTGATCATATATGTATATTG
AGTACTGCATGGATACATATATATATATATATATATATTTCAATAGTACA
TATTTAGAGTAGTATAAAGGCTATTATTATTACGAATAGTATGTATAGCA
GCCTTCAGTAGTAAATATGTCGATATGTATGTATTTAAAAAGACAATAGC
CTAACTCTAATACCGATGTAGTTTATATGAACATAATTATATATTTACCT
TTAAAAGGTCAGTTTAATCTCCGAACTAACAAACAGAATTCCTTTAGTTC
AATGAGCACAAACCACTAATAATGATTAGGAATTTTTGATATCAAATTCA
CTGTCTCAAAGATTGAAATACACTTTTCTTTATATTTCCCTTTTAGTGTG
AAGACATGTCTATTGAAAGCGGAAGTGGACAAAACGTTGTTGAAGAGCTT
ACTATTACTCCGCTTCCTCCTCTACCCAAGTTACGACTTCGACCAGGCCT
GTTCCATTCTTCTTCCAAATTGGATGTCAAGCCTCCATTTAAATATGAAG
AAAAGACGAAGAGTAGTAGTAGCAGTAAAGAGATAGAAAAAGTAAGGTGC
AAAGTGGAAAATGAGGAGGAAGAGAAAACATCCAGACTCTTGATGAAGTC
CGAGTGTCGTTCTGCAGGAGGACGTCGTAAAAATGGATCCTCTCTCGTAC
ATTCGATACCAAAATTTAGTGAAGTGAAAAAGGGTAAATTATCTGAAGTT
CAAAAAGTGCTTCAGTCTAGACTTTTATCAAAGCAAAGGCTGAAACAACA
ACAACAACTTTTAAGACAGCAACAGCAATTCCAACAACAACAACGAGAAG
AAGAGGAGGAACAGTTTGAGCAAGAGCCACCAAGTATATCAAATCTAAGT
CAAAAGAATTCGAGTCTGGATGCATCGAACTTACTTCAAAACATGATGTA
CAAGCACAAAAGTGGATATAGCAATAAAACCTTTTCTCCTCTAGCTAAAG
TGAGACGTGGGCGCAAGCCTGACAAGCGTGAAATTACGCATGTCCTAAAA
GTAAATGCTCCACCATTGTCTTATCCTATTCTACCTCATTTATCGGAAGT
AACAATAACTCCAAAAGTGATTTATAACCCAAATCCTCGTCATATTCATT
ATAATCATAATGTTGAGGAAGCCTTAGATCTACGAACACCTGGGAGATGT
TCTCCTCCACCGGAGTCTTATACTAGTAACACATTCACATTCAAATCTAA
AGAGGACTCAAATCAACAGGCGGCACTGGTCAAGAGAAAGCTCTCCAATT
TGTTACCCATTTCAAGTAGCCTTTTTTCGGATTTTAATTCAGAGGTAAGA
CCTATTCTTATTCTTTCAAAATCCCTATAACTGCCCCTTTACAGCCCTTA
TTTAGAGGAATGTATCTTTAAACAAATAACACCTGAATAGAAATTAATTT
TTCGATCAAAAAAATAAAAATAATACTTTCCTTGGCAGAATAATTTTCCA
AATTTATATTTTTGTCAGGGAGGAAGAAAAAGATATGCTAAACGATCTAT
TTTAGAAATACCCTCCGTTTGAGTCACCACTAAGATTGTACTAGGACATA
CGTAGCAATGCAGTAGTATTTGATGTACCTATTTCCTTTTAGATTCAAAT
ATGTATATCCATATTTATGTAATCATAGAAAGAAGAGACAAATGTGTTTC
ACTTCTCATTTTATCCGCCTCTAATGTTTTTGACTGTGGATATTAGTCAT
TAGTCCTCCTGGGTCATTAGTTGAAAGGGATCTTTGGCTTAATTCTCCTT
CAGAAGTCAGTCAGTTTGATTACAAAGAAAACAACAACTGCATGGAGCGC
CTCCCAAATAATTCTTAGCTAATTTCAGGCAAAAAATGAGAAAATATTTT
ATAAATAGATTCAAAGTTCCGTTTTCTCAATTATGCAAAACATATGACAC
GGCTAAAGTGTCTTTCTTTTTATTTACAAATATACCATAGTTCCTTCCGA
ACGGATTTTTGACTGCAATTGGGAGGGTTTTTAGATAGTTTCCTTTCTTT
ATGTTTCTTTCTATTTTTATTTTTACTTATGACATCATTTTTGATAGAGT
CGTCGTCAAATTGTCTGTCAAGTTTGCAATTTTATAAATGATGATATTTA
TTATTGTTTTTATTCGTATTATGTAAGATACATGTTGAAAATGAAGGTGT
CACAAGCACAAAAAACAACTTTTTGATCTACATACATATTATGTAAATAT
AAAATAAATTAATTATGAATTGGCATTCTTTGCAAAGTACTTAACTAACT
CAGTTTTAAATTTCCCTCTTCATAAATTATCATTTTGAATTGTGTTAGGG
AGTTCGGTCTGGTAATTATAAATACATCGGATTCCGTTATAATAATTTTT
GTAATACCAAACTAAAATTATGTTCAAGTTCGGTATGGAAAAATATGTCT
GCAAAAAATCAATGGGACTTGATTGATCCCACAAAACAAATATTAACCTC
TTTTAAAAAAAAAAAACAACAACAACATCGATTTCAATTTTATTAAGAGC
TAACTGATTTGGCTTAAGCAGATGCTTTTTTTTATTTAAGAAATTTCAAA
AAGTGGAAATTTGCTGTATATGACCTTTGACCTTGTGTAAAACCGAACCG
ATTTTTTTTTATCCGAGTCTCAAGGTTAATTTGGAATGACAAGGTAGTTT
TTCTTTTTTTTTAAAGAGGAAAACAATAAGGGAATGTGGTGAGAAGAAAT
AAGATGCTCTCTGACAACTCAAAAAGTGATAAATATTTTATCTCAAAAAT
TTTATTGATTTAACTTATTTATCTTAATTAGATATGTTATGAATGATCAA
GGAATATGTTTATATACNTTATATACCGAGTAWTATWTSAAATTTACATA
AAGAATATATAAAATGTTCAAAAAAAATTATTAAAAAAAATACTACGGGA
GTCAGTTAAATTTTTTGAAACAGCTTTCTTATTGTTTATTGTTCTCTCTC
TCTATAAATAGACAAATTCAGAAGGAGAGTTTATATATTATACATATATA
GAAAGATGGAACATTTTAATATATATACTTTAACTTATAGACCTTTATAA
AGTATTTTTCATGAAAGTAAGTCGAGAGTAAAAAAAAAAAATATTGTTTA
AAAAAGTCAAACCTGCTTATACTCGCTTTCAAGACTATATATATATGTAC
CTATGTATATTCATTTATAGTCTTTTATATACTGAAGTTTTTTCTCATAT
CCTATAGATAGTAGAAATAACTATTATTACTCAAATATAGTACAACATAG
AAATATAATTTTGATCAAACACATTCAGAGTACCCAGCTTATATTTTATT
ACAGTATTACTTGAAGGGCCAAAAGTTGTAGCATCTGTGCACGCATCATA
TGTACGTACGGCAAAAGATGCAATTCTTTTTCTCTATAATGCATATAAGA
ATTCAGGAAATGCAGATTTATAATAATAATATTGAACTAATTAARTATTA
TTATTGATATGATACACTTTATATTCAAATCGGTTTGAGGTCTACCACAT
ATTTTTAAGGAAATGACACTTGACATTTGAGAGTCTACTCTCTCTTGTAA
TAAGAGTGTTTGTATGTATATTTTGGACCCTGTATTACGTCATTCAACTA
CTATTTTTCCTTAAATGCCAAAGAAAATCGTTTTCCCTTTAAATGTATGT
ATGTTAATAGAATAAGTGAGTTTTCTATAAATAAAATCTTTAAAACATGA
TTTTTCCTCTTCAAACACATCAAATACTTAGAAAAATTGATATCTAAAAT
ATCTTTATTTCCCTCTTGTACATTTATACATACAAACTTTCTTTTAATTT
ATTTAAAACATTAGATATGTTAAATTCATTTTGTAGCACTAATAAATGTT
TACCTCTTTTTTCCTTCCCTTATCCACTTCTTTTGCCAGTTTTTTCAAAA
ATAGATTCTGTTAGTAAATCTTTTATTGCATTGCTTTCCAATATTTACGC
TTAAAACTGACTTGTATGAGTCTCTACTAACATATATATGTATGTACAAA
TAATCATTCAAAAATAATCTCATTTTTCCATCATTTGAATTTGACTACAA
TTTGTACGAGTATATACCTATACAATTGTAAATAGTGAAACTTATTTTTT
TAGTTATTATAGTGAGTGCTCCTTAAAGATGAAGTTGTTTTTAGACTTGT
CATAGAGAGCAAAAAATTAAATTGTTGTCTAGACAAAATTCAAATGCATT
TGGGTAATCTTGAAAACTGACTGCCAAATGAAATATAAATAAATATATGT
TCATCCTAAAATTTCTCATACTATATTTTTATATTTAAAAATTAAGTTCA
GACTTGAACTTGAATTTCATTTTCAGTTATTTTATTTTTCATGTAGGATT
TGAATGCATTTCATTATTATGAACTCCCATATAACTTACATTAGTAATGT
ACGGCCACTATTAACTTTACTTTACTTCCCTGCTATGTTTATCCACCCCA
TATACTAAAATGTCCTTTTGTTATCTTTTTGCATTTTACCTTTGCTTGAC
CTTATATGAAAATTATTGATCCTGTTTCCAATTTTTTTGGTATGGTACTT
TGTTAGTTTCTCAGTTATTAACAAATTCTAGAATTAGTCATCGAGGTTTC
AAAGATTTTTTTTATGCGTCCTTATTCCTCAGATAAATAACTACTTTTAC
GATGAATAAGAAGATGCTATATTCTAAATAAAACATTTCTTGTTTGAGAA
TAATTGATTAAGTTAGAAAAACTATTCTCTCCACTTTAATTCAAATTTAA
GAAGAAATTAGTGTTGGATCGGTCTGAAGAAACAAAAAGACTACAAGTTG
ATCAGTCTGGTCCTAATAAAGTTTGCTAGTCCTAGGACCAGTCCTTATTG
GTCTTTTATGGTAACTACTACAGCTGAAATGAAGTAATCCTTTCAACTGT
TCAACTTAACCTATTTCAAGAAGACAAGATACTTGAAGTTTTATGTAGGA
GCTGTGTGGCTAAAARTTATTATTATACATTCTAGCTATCATTCATAATT
ATCTAAGTTTTTATATTATTCAATCCTAGCTAGGAGTGAAGAAAATAAAA
AAGATAGGAGCCAAAGGACTGAAGGACGTCCTTAGAACTGTTAAATGGTA
AAAAAGATCAGACCGATAAAAAAAAGACTGATTAGAAAATCAGTCCCTAA
GGCAGATCCAACACTAAGATAGATACAGTTTTATATAAGCTTTGTTCCCA
GGGATATACTCACGTTAGGATTGGAAGAGAAGTGACGAATGATTAAAAGT
ACATAAAATATACTAAACTATGTTTTTTTATATTAAATCTGATCTAAACT
CTTTTTATAATTCTGAAAAGTCATGTATTTTCGCATTGGAACTCTTAGTC
ACTGATGAAATAATATAAGTGTGTATTTTTTGTTTCAGGCCACAATCCAA
AAGTTTAACTTCACACCTGGAGACTATCTTTGTTTAGAAGAGCAGGAGGC
TCCAATACAATACATTCTTGATCCAGAAAAAAGAAGACAAGAGCTCCTTT
TGGACAATGGA
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