EMLSAG00000001437, EMLSAG00000001437-684203 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001437
Unique NameEMLSAG00000001437-684203
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001437 vs. GO
Match: - (symbol:vsx2 "visual system homeobox 2" species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA] [GO:0007275 "multicellular organismal development" evidence=IEA] [GO:0050896 "response to stimulus" evidence=IEA] [GO:0007601 "visual perception" evidence=IEA] InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 ZFIN:ZDB-GENE-001222-1 GO:GO:0007275 GO:GO:0005634 GO:GO:0007601 GO:GO:0043565 GO:GO:0003700 GO:GO:0050896 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 eggNOG:NOG237888 HOGENOM:HOG000115909 InterPro:IPR023339 PROSITE:PS51496 HOVERGEN:HBG036251 EMBL:U62898 EMBL:BC055588 EMBL:BC067664 UniGene:Dr.75766 ProteinModelPortal:O42477 SMR:O42477 STRING:7955.ENSDARP00000038309 PRO:PR:O42477 Uniprot:O42477)

HSP 1 Score: 42.743 bits (99), Expect = 4.018e-4
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0 
Query:   84 KAELRSNSIAVLRAKAQEHSAKILAS 109
            K ELR NSIA LRAKAQEHSAK+L +
Sbjct:  336 KEELRENSIAALRAKAQEHSAKVLGT 361
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BLAST of EMLSAG00000001437 vs. GO
Match: - (symbol:VSX2 "Visual system homeobox 2" species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0007601 "visual perception" evidence=IEA] [GO:0008284 "positive regulation of cell proliferation" evidence=IEA] [GO:0008285 "negative regulation of cell proliferation" evidence=IEA] [GO:0043565 "sequence-specific DNA binding" evidence=IEA] [GO:0045165 "cell fate commitment" evidence=IEA] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA] [GO:0050896 "response to stimulus" evidence=IEA] [GO:0060040 "retinal bipolar neuron differentiation" evidence=IEA] InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005737 GO:GO:0008285 GO:GO:0005730 EMBL:CH471061 GO:GO:0008284 GO:GO:0007601 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0050896 Orphanet:98938 Gene3D:1.10.10.60 SUPFAM:SSF46689 Orphanet:2542 TreeFam:TF350743 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 GO:GO:0045165 GO:GO:0060040 Orphanet:2543 eggNOG:NOG237888 HOGENOM:HOG000115909 KO:K09336 OrthoDB:EOG76474B InterPro:IPR023339 PROSITE:PS51496 HOVERGEN:HBG036251 CTD:338917 OMA:RAQEHST EMBL:AY336059 EMBL:AC005519 EMBL:AC006349 EMBL:BC128153 RefSeq:NP_878314.1 UniGene:Hs.449771 ProteinModelPortal:P58304 SMR:P58304 BioGrid:130813 IntAct:P58304 STRING:9606.ENSP00000261980 PhosphoSite:P58304 DMDM:17374365 PaxDb:P58304 PRIDE:P58304 Ensembl:ENST00000261980 GeneID:338917 KEGG:hsa:338917 UCSC:uc001xpq.3 GeneCards:GC14P074706 HGNC:HGNC:1975 HPA:HPA003436 MIM:142993 MIM:610092 MIM:610093 neXtProt:NX_P58304 PharmGKB:PA26511 InParanoid:P58304 PhylomeDB:P58304 SignaLink:P58304 GeneWiki:VSX2 GenomeRNAi:338917 NextBio:97195 PRO:PR:P58304 Bgee:P58304 CleanEx:HS_VSX2 Genevestigator:P58304 Uniprot:P58304)

HSP 1 Score: 41.9726 bits (97), Expect = 8.803e-4
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 
Query:   86 ELRSNSIAVLRAKAQEHSAKILAS 109
            ELR NSIAVLRAKAQEHS K+L +
Sbjct:  300 ELRENSIAVLRAKAQEHSTKVLGT 323
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BLAST of EMLSAG00000001437 vs. C. finmarchicus
Match: gi|592846406|gb|GAXK01111138.1| (TSA: Calanus finmarchicus comp696429_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 1.322e-3
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 0 
Query:   84 KAELRSNSIAVLRAKAQEHSAKIL 107
            K + RSNSIA LRAKAQEHSAKI 
Sbjct:  348 KDDFRSNSIAALRAKAQEHSAKIF 419
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BLAST of EMLSAG00000001437 vs. C. finmarchicus
Match: gi|592870510|gb|GAXK01087052.1| (TSA: Calanus finmarchicus comp1718171_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.100e-1
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 0 
Query:   74 LRAAFPDERIKAELRSNSIAVLRAKAQEHSAKIL 107
            L    P   I  +L S S+A LR KAQEHSA +L
Sbjct: 1091 LPTFLPATEIGKDLFSTSVAELRRKAQEHSAALL 1192
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BLAST of EMLSAG00000001437 vs. L. salmonis peptides
Match: EMLSAP00000001437 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1245:80522:80977:-1 gene:EMLSAG00000001437 transcript:EMLSAT00000001437 description:"augustus_masked-LSalAtl2s1245-processed-gene-0.3")

HSP 1 Score: 302.368 bits (773), Expect = 4.298e-106
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MXRKSMEVAKHYGNENGQSSPLSCPPSPDPEIGAGGISHHHHPLEGDSDICKYEDLSEDEDEDGEEAMEVGGGLRAAFPDERIKAELRSNSIAVLRAKAQEHSAKILASHKKSEEDDGDDDESFVTVVGSSSSSSFPHLRPPTSSTSSTTT 151
            MXRKSMEVAKHYGNENGQSSPLSCPPSPDPEIGAGGISHHHHPLEGDSDICKYEDLSEDEDEDGEEAMEVGGGLRAAFPDERIKAELRSNSIAVLRAKAQEHSAKILASHKKSEEDDGDDDESFVTVVGSSSSSSFPHLRPPTSSTSSTTT
Sbjct:    1 MXRKSMEVAKHYGNENGQSSPLSCPPSPDPEIGAGGISHHHHPLEGDSDICKYEDLSEDEDEDGEEAMEVGGGLRAAFPDERIKAELRSNSIAVLRAKAQEHSAKILASHKKSEEDDGDDDESFVTVVGSSSSSSFPHLRPPTSSTSSTTT 151
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001437 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2
Match NameE-valueIdentityDescription
-4.018e-476.92symbol:vsx2 "visual system homeobox 2" species:795... [more]
-8.803e-479.17symbol:VSX2 "Visual system homeobox 2" species:960... [more]
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BLAST of EMLSAG00000001437 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592846406|gb|GAXK01111138.1|1.322e-379.17TSA: Calanus finmarchicus comp696429_c0_seq1 trans... [more]
gi|592870510|gb|GAXK01087052.1|8.100e-150.00TSA: Calanus finmarchicus comp1718171_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001437 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000014374.298e-106100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1245:8052... [more]
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BLAST of EMLSAG00000001437 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001437 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001437 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001437 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1245supercontigLSalAtl2s1245:80522..80977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1245-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001437 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001437EMLSAT00000001437-697284Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1245:80522..80977-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001437-684203 ID=EMLSAG00000001437-684203|Name=EMLSAG00000001437|organism=Lepeophtheirus salmonis|type=gene|length=456bp|location=Sequence derived from alignment at LSalAtl2s1245:80522..80977- (Lepeophtheirus salmonis)
ATGCMCCGCAAGTCAATGGAGGTTGCCAAGCACTACGGAAATGAGAACGG
CCAATCATCTCCTCTTTCCTGTCCTCCCTCGCCAGACCCTGAAATCGGTG
CTGGAGGAATATCCCACCATCATCACCCCCTGGAAGGGGACTCTGACATT
TGCAAATACGAAGATCTCTCCGAGGATGAAGATGAGGATGGAGAAGAGGC
CATGGAAGTCGGAGGAGGACTCCGGGCTGCCTTTCCAGATGAACGCATAA
AAGCTGAACTTCGATCCAATAGCATTGCCGTGCTCAGAGCAAAGGCTCAA
GAACACTCTGCTAAAATCTTAGCATCGCATAAAAAGTCTGAGGAAGATGA
TGGCGACGATGATGAATCCTTTGTGACCGTCGTTGGATCATCCTCTTCCT
CTTCTTTCCCTCATCTGCGTCCTCCAACTTCTTCTACGAGTTCGACAACC
ACTTAA
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