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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000001444 vs. L. salmonis peptides
Match: EMLSAP00000001444 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1246:24397:29045:1 gene:EMLSAG00000001444 transcript:EMLSAT00000001444 description:"maker-LSalAtl2s1246-snap-gene-0.14") HSP 1 Score: 235.728 bits (600), Expect = 7.541e-81 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query: 1 MWEMRKRRNLPXLHPLPPSPPTSWLSNIGRWESLVKLKAIIVSVKFLSQDLAFKRISVDVVNMSMDVDLYKYFTMITIQSFDSLKWMSLQSPLKNKRRSCSLGSFSYELKSKLPGSSY 118
MWEMRKRRNLPXLHPLPPSPPTSWLSNIGRWESLVKLKAIIVSVKFLSQDLAFKRISVDVVNMSMDVDLYKYFTMITIQSFDSLKWMSLQSPLKNKRRSCSLGSFSYELKSKLPGSSY
Sbjct: 1 MWEMRKRRNLPXLHPLPPSPPTSWLSNIGRWESLVKLKAIIVSVKFLSQDLAFKRISVDVVNMSMDVDLYKYFTMITIQSFDSLKWMSLQSPLKNKRRSCSLGSFSYELKSKLPGSSY 118
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001444 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000001444 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000001444 | 7.541e-81 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s1246:2439... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s1246 | supercontig | LSalAtl2s1246:24397..29045 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | maker-LSalAtl2s1246-snap-gene-0.14 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1246:24397..29045+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000001444-684210 ID=EMLSAG00000001444-684210|Name=EMLSAG00000001444|organism=Lepeophtheirus salmonis|type=gene|length=4649bp|location=Sequence derived from alignment at LSalAtl2s1246:24397..29045+ (Lepeophtheirus salmonis)
AAGGGACAGTTGAAAACAAAATACTAAGGGTATTTTTGTGTTTGAAAGGT
AAGGAAAAAATATATAAAGAAAAGAGCGACGAGGTTGAGAGTGCATTTAG
AAGAAATGGCCAGAGTTACTTTATTAAGTGAAGGAAGAAGAAGAAAGAAA
TGGAGTTCTGCTATAAAGAAGAGAGAATTATTATTATAATAATTAATAAC
TAAGGAGAAGAAGTGAATTTTTTAAGGAGCTAACTATAATTATTAGTTAC
TACAAAGGAGGAATTGATTTTAGCCTCATTTTAGTAGTAGATTATTAATT
AACTGAATAGTTGTATTAGTATTCAGTCCGCGAATTGTGATCTATTGAGA
AGGGATATATATTCTGTCGAGAGTTTCCATTGAATTGAATCGCGTAAGAG
GTGAGGAGTTGTGATTATTGATCCACTATCTGAATCATGTGTTTAATACT
TTAATAATAACTAGTAATAGTATTTATTTTTTATAAAGTGAAGAACTGCA
AATCCGACAAAGATGACGGAAGAGGACTTGAACACGTATACTCTTCAAAT
GCAGCAAGTGGAGGCTGCTCTCACAGGMGATCCCGAGAATGCAGAGCTCT
TGACCCTCAAATCGGATCTTGACCAGGTCATTTCCCTCACCCGGGATTTG
ATCGATACCCAAAGGAGTCAGGATGTGGGAGATGAGAAAACGGAGGAATC
TCCCGKCTCTGCACCCACTCCCTCCGTCTCCTCCAACATCATGGCTGTCA
AACATTGGCAGGTGGGAGAGCCTTGTCAAGCTCAAAGCAATAATAGGTTA
AGTATTCATGTTACAGTCCTTTGCATTACTCTATTAGCTTGAGCATTCTC
AAGCAGAAGGTGCAGCTCAAAGTTCTATGTTTGTTTGTACATTAGAGGGT
TCTCAAAAACTCTTCTTTGAAAAATAGTCATCCTAAGCTCTCAAAATCTT
CCTTTTCATACAAAAACATGTACTCAGGGGCTATTATTTTTTCCTGATAG
CTACAACTCCTTGATTTAGGGGGAGGGGTAGCTACAGCCCCTCCATCCAC
CACCTGTGGACGCCCCTGGTAATAAAGTTTGAGTATCATTAAGAAATATT
TAGAGGTAATTTAGCACACATTTGCTAGATCTGATTATTAATAAATTATG
AGATATACTCGGTTCATTGAAAACAATTGGCTTGCTTCATTTGCATCTTT
GTTTGTTAATGCTTTACTTMATCAAAAAGGCTGTCTATTTGGGTTATAAA
GTACGGTTTTATTCATTTGGTCCCGATTTAGTAGGATAACCCATTATTAA
AAAAACGATTTTTAAGGAATATAAACTTGACAAGCCACGGTAATGAATTA
ATATTATCTTGGATTTCTTACCTCATGTAATGACCATGAAGGCAGATTTT
GTGTTGTACTCTTTTTATTAAGTACATACGTCATAACAGATCCATTCATT
TGAGTGTGAGCATTCCCTGGCTATAAATATTCAATATTATTTTTCAATTC
CCTTTATTTTTCTGATTGCCTCATATATAAAATATCAAAGTATTTCCTCC
TATACGATATAGATATTGAATATTTCCCCCCACATATCTGTTTTTCGATT
TCGAGCCTACGTCTAATATTTACTTATTTTTCGATAAAGCTGGTATCTTT
CCTTTTAAATATACAAAATACCTAACAATACAGCACTTATAATGAAAAAA
ATATTTTAACTTTGTGACTTGATCGTTCAAAAAATATTCGAACAACTATA
CATCTAAATCAGCAACTCACTATCGGAAAGGCATAAAAAGTTATAAGATA
CTTTTTTTTGGTACTGCGTATAGTGCCCACCTTTTTCGAAACTTTCTATT
AATGAAAAACATTATTTCTTGATAATTAAACAACGAATTATTTTTATTTT
ATTAATTAAAACAGTTAATTTTGAAAAGAGCTTGAATTAACTAATGTATT
CTTAAGGAAATCCGGGGAAAATCGCGGTTTTCTGACATAATTTAGAAATA
AATAAATTTATAGTGATGTATCATTATGTATTTACGATATTTCTAAGGAA
ATAAAAATGTTTAATTCAAAACTTTGTCAATATATAAACTTTTCTCTCGT
TGTACTACTTCTAAATATTTCTTGATCCTGCTTTTATATTTTGTAGTAAT
CGAAATAAATATTTTGAGACAATATTAGGAGCGCAACTTTTTCAAAAAAA
GATTCTTAAGAACTACTCTAATATACATACATATTTAAGATGCACTTCCA
AACATCGTCCCATCTCATCACTTTTTCAAACATGTTACTAATTTTTGTTG
ATGTTCAGTTTCAGTCAAGTTTCTAAGTCAAGACCTTGCTTTCAAGAGAA
TCTCTGTTGACGTTGTTAACATGAGTATGGACGTCGATTTATATAAATAT
TTTACCATGATCACCATCCAATCATTTGGTAATCCCTCTCCCAAGGGCCC
TTCGTTCCTATCATATTATGTTATATTCTATTTTTAGATAGTCTTAAATG
GATGTCGCTTCAATCTCCGCTTAAAAATAAAAGACGAAGTTGTTCACTTG
GGTCATTCAGTTATGAATTGAAATCAAAAGTATTAAAATAGTGTTAAAAC
TTACTCCAATTGGAACAAATTATGTTTTTGCCTACTACGGCAATAAAATG
AAGACACATGGGTTGAAAAGTCCCAGGCTTAACAAAAAAAAATATAATTC
GCTTTATGGAGCGGAGTCATATAACACTTTTCAAGGCATGGCTTAACTTG
AAGGTATTTTTTTCCTATCAAGAATAAGTGTAAAATTAAAACAATTGTTT
TTGATCCATTGTTTTGGAAATAACATAAGTACCGTCACACCTAGCACAGT
AATTCACAAACTAAAGAACAGACTTTTATGAAATTTAGCTGTCATTTGAA
GGTTGTTACTAACTGAAAAAGAGGTCAATTTAAAAAAAGAAAGAAAAGTA
GAGCCATCTATATGTGAAGCCCTCGGGACTTTTCAAACCATGCGTTAAAA
TAATTTACCTATTTTAAGTAGCTAAGTAATATTTCATAAATAATCGTAGG
TATATATGTAATTACAAGACAAAAGTAGCAACCGCCTTTATTGTTTTTGT
GACTGTTCTCTATTGAAGGGAATACAATTGTATACCTATCGAGATTAAAT
GAAATAATTATTTAACTACAAATATTAGAGTCTATTGTTTATCATGAGAA
ATAGTTAATAGCCACCTTGTGTGGCTGMGYTGTAGAAATTCTTCTGCAGT
TTTACCTTGATTAGTCTTTTATTATGGCGCAAATGAGTTCGTACAATCAC
AAATTGAGACCCAATTTTAATACTTCCTTCTGTATTTTTTCTATGAGGAA
AAAACGGTTTCTTAAAGCAATGTTGAATGATAAGTGATCATTTTTATATT
GTTTCGCTCATTTAACTTTATATAAGTCACGGATGAGTAAACAAAACGAT
GTATTACATCTGTGAGTTATTATATAGGTTTGTTCAACTATTAAAGGGAG
GAGATATGTCGTAGAATTTACCATGTGATCCTTTCAATTTTGCATTCAAC
TAATATAGTGTTTTCTAATTTATATAGTTACCAGGAAGCAGTTATTGAAG
AAATTTCAACTAATGGAGAAGTGTCTGTCAAATTTAGAGGTACAGAGCAT
GTAGTTGTGACTTCCTTGGGACTTTTGAAAATTTCAAAACTAGGAAATAT
TAAAAATTTGAAGAATAGAAAGGAACTCCTTGCCAAGCAAAAGGAATATT
TGAAAAWGAAAAAAGCAAAGAAATTGGAAAGGCTAAAGGTAATGGAAGAA
GAGCGTGAGCAAGAGAAAAATAAATGGAAGGTATTCAGTTCTAAGGTAAA
AGCTTCTTCCTATTCATAAGATGTACAGGGACGTCCGCAGGATCATATAT
ATATATATTTTTTTTTTTGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCAAATATTATTAAATAGTAAAAAGCAAAAATTCCTTAA
TTTGGGGAGGGCTACAGCTCTTCCAGCCCACCCCCTTTGGACGCCTCTGT
TGTACGTAGCACATAATAATTCATTATTTGTTTTTTGTTTCCAGGCATTC
GGTAAAAAGGGTTTCGTCAAGAAGAGTATATTCAAAACGCCTGAAAATGC
AAAGGGGCGCGTAGGAATTGGTACTTGTGGAGTTTCTGGTCAAAATATGA
CAACGTTTTCATCTGCATCAAAATATCGGAAGGGAAACTAATGATCCTAA
TAAAAGAATCGTCGTATTTCTGTCATGAGAAAATATTATTGACCTTGGAT
TTTTATATAACTAGAGTTGTTTATATCATAATATTTTGCAGATTACCATA
AAATTAATTGCTATCCTTCGATTCAATTAATTTAATTTATCCTAGCCCCC
TAAATTAGTTTTTGTAACTTATATTTCCAAATAAAGATAATTTGGTTTG back to top
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