EMLSAG00000001446, EMLSAG00000001446-684212 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001446
Unique NameEMLSAG00000001446-684212
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001446 vs. C. finmarchicus
Match: gi|592845228|gb|GAXK01112316.1| (TSA: Calanus finmarchicus comp569583_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 5.127e-2
Identity = 25/82 (30.49%), Postives = 37/82 (45.12%), Query Frame = 0 
Query:   45 FSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNIXXXXXXXXXXXXXXGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL 126
            F P    S L QN +    S +   +  PF  S         + + GA    P   S  +L  ++R++ADV + YKR+ DEL
Sbjct:  172 FEPTNYFSNLLQNLVPVMISAVAGIIFGPFYQSPTARHTRVKRDHEGA-APQPSFLSADKLAWVLRSLADVTEQYKRWDDEL 414
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BLAST of EMLSAG00000001446 vs. C. finmarchicus
Match: gi|592893164|gb|GAXK01065211.1| (TSA: Calanus finmarchicus comp709865_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.441e-1
Identity = 25/78 (32.05%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:   44 LFSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNIXXXXXXXXXXXXXXGAEGSSPWDFSLKQLTALMRAVADVADNYKR 121
            +  P  ++  + QNF+++ +S+I   L++PF      +R SR +R+SG+   + + FS +Q T ++R +AD A+ Y R
Sbjct:  181 VMHPDNIIVGIIQNFINFLTSSIGWALIMPF--YQASNRQSRVRRDSGSSLPNDFPFSTEQFTWVLRNMADSAEEYHR 408
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BLAST of EMLSAG00000001446 vs. C. finmarchicus
Match: gi|592956113|gb|GAXK01002443.1| (TSA: Calanus finmarchicus comp91059_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.748e-1
Identity = 23/82 (28.05%), Postives = 35/82 (42.68%), Query Frame = 0 
Query:   45 FSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNIXXXXXXXXXXXXXXGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL 126
            F P    S L QN +  F S +   +  PF  S    R     +     G      S  +L+ ++R++ADV + + R  DEL
Sbjct:  203 FEPTNFFSNLVQNLVPVFISAVAGVIFGPFYQSPTSRRTLALVKRESESGRQSAFLSAGKLSWVLRSLADVTEQFSRLDDEL 448
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BLAST of EMLSAG00000001446 vs. L. salmonis peptides
Match: EMLSAP00000001446 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1246:66415:67446:-1 gene:EMLSAG00000001446 transcript:EMLSAT00000001446 description:"maker-LSalAtl2s1246-snap-gene-1.31")

HSP 1 Score: 259.61 bits (662), Expect = 5.228e-90
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MKQYKRDSHWENIPDGTAFSDRPYVEKTLDNNGAVNFEELSNDLFSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNISGKKSRVSRSKRNSGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL 126
            MKQYKRDSHWENIPDGTAFSDRPYVEKTLDNNGAVNFEELSNDLFSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNISGKKSRVSRSKRNSGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL
Sbjct:    1 MKQYKRDSHWENIPDGTAFSDRPYVEKTLDNNGAVNFEELSNDLFSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNISGKKSRVSRSKRNSGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL 126
[Close]
BLAST of EMLSAG00000001446 vs. L. salmonis peptides
Match: EMLSAP00000010785 (pep:novel supercontig:LSalAtl2s:LSalAtl2s714:205222:205948:1 gene:EMLSAG00000010785 transcript:EMLSAT00000010785 description:"maker-LSalAtl2s714-augustus-gene-2.30")

HSP 1 Score: 148.288 bits (373), Expect = 4.340e-46
Identity = 66/106 (62.26%), Postives = 87/106 (82.08%), Query Frame = 0 
Query:   21 DRPYVEKTLDNNGAVNFEELSNDLFSPMGLLSQLGQNFLSWFSSTIFLTLLIPFNISGKKSRVSRSKRNSGAEGSSPWDFSLKQLTALMRAVADVADNYKRYSDEL 126
            DR  V +T D+NGA++ EE+ ND+FSP GL+SQLGQNF+ WFSS++FLT LIPFN++G K ++SR+KR+ G   + PW FS+KQ++ALMRA+ADVADNY RY DEL
Sbjct:   40 DRQIVGETFDDNGAIDIEEVRNDIFSPTGLVSQLGQNFVQWFSSSLFLTFLIPFNLAGNKRKLSRTKRSRGNGETLPWYFSMKQMSALMRAIADVADNYNRYKDEL 145
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001446 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001446 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592845228|gb|GAXK01112316.1|5.127e-230.49TSA: Calanus finmarchicus comp569583_c0_seq1 trans... [more]
gi|592893164|gb|GAXK01065211.1|2.441e-132.05TSA: Calanus finmarchicus comp709865_c0_seq1 trans... [more]
gi|592956113|gb|GAXK01002443.1|2.748e-128.05TSA: Calanus finmarchicus comp91059_c1_seq1 transc... [more]
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BLAST of EMLSAG00000001446 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000014465.228e-90100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1246:6641... [more]
EMLSAP000000107854.340e-4662.26pep:novel supercontig:LSalAtl2s:LSalAtl2s714:20522... [more]
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BLAST of EMLSAG00000001446 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001446 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001446 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001446 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1246supercontigLSalAtl2s1246:66415..67446 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1246-snap-gene-1.31
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001446 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001446EMLSAT00000001446-697293Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1246:66415..67446-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001446-684212 ID=EMLSAG00000001446-684212|Name=EMLSAG00000001446|organism=Lepeophtheirus salmonis|type=gene|length=1032bp|location=Sequence derived from alignment at LSalAtl2s1246:66415..67446- (Lepeophtheirus salmonis)
ATGAAACAATACAAAAGGGATTCTCATTGGGAAAATATCCCTGATGGAAC
AGGTTTTCATGGAAACCTGTTGTGGGAGATTATGGTTCATTTGAAAGAAA
GTTTGAAAATGATTAAGTAAAGGTATACAATATTTATATATTACAGATAA
TACCATATACTATTATTTATTTATTTAAATGAAGTGCAGTATATGTAAAT
ATACAGGTATGTCGAATCAACCCTATTGTAATACATTAATGTACGCCATC
TTATAATCATGAAGCATCAATGTTTTTTTTTGTTTTTTTTTTCCCCCTAC
ATTTGGTCTCCTGCAGTTTGACTTATGATTTAGGACATACGTAAAAATAT
GTATTCTAAATAACAACGTAAAATAAGGGCCCTTATACATAGATAGTCAA
AGGGAAATAGCAATACATATGAAGCGGTCCATTCAGTTTCTCTTAAACCT
CTCACAAGACATCAAGATAAAGTCGGAATGAAATATATATTTGTTATACT
GTGTACTATTTGTATAGTAGGGTTCATCTCACTCCTAGAAGCCAATGAAT
CTTTTTATTCTAATGAGAGTTATTATTCTAATCCGGGTAACTAAGAACTT
CTATTCTTGAAATAAATACATATTGATTAGGACACTCCTTTCAAATGCAG
CATTCTCAGACCGTCCATACGTTGAAAAAACATTGGACAATAACGGTGCT
GTTAATTTTGAAGAATTAAGCAATGATTTGTTTAGTCCAATGGGACTCTT
GAGTCAATTGGGTCAAAACTTTCTTTCTTGGTTCTCCTCCACTATATTCC
TAACTCTTCTCATTCCTTTTAACATTTCTGGAAAGAAGAGTAGGGTATCA
AGATCAAAACGGAATTCAGGAGCTGAGGGATCTTCTCCTTGGGACTTTTC
TCTGAAGCAACTTACTGCACTGATGAGAGCCGTTGCAGATGTGGCGGATA
ACTACAAGAGGTATGATTGACTTAGATTTATATAGATACACTATTTATTT
ATTTTTCGACTAGGTACTCGGATGAATTATGA
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