EMLSAG00000001457, EMLSAG00000001457-684223 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001457
Unique NameEMLSAG00000001457-684223
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786237|gb|GAXK01168331.1| (TSA: Calanus finmarchicus comp189_c35_seq19 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 1.744e-9
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALE 115
            G+   T VWI+L+ M DLLL  ARR  S AILS K  TKEFM+LIA E
Sbjct:  134 GKRSLTAVWISLEVMVDLLL*CARRLASAAILSNKSFTKEFMILIAFE 277
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786249|gb|GAXK01168319.1| (TSA: Calanus finmarchicus comp189_c35_seq7 transcribed RNA sequence)

HSP 1 Score: 54.299 bits (129), Expect = 5.129e-9
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG 121
            GR   T VWI+L+ M DLLL  ARR  S AILS K  TKEFM+L+A E     G
Sbjct:  132 GRRSLTAVWISLEVMVDLLL*CARRLASAAILSNKSFTKEFMILMAFEETPVSG 293

HSP 2 Score: 28.4906 bits (62), Expect = 8.974e+0
Identity = 25/90 (27.78%), Postives = 41/90 (45.56%), Query Frame = 0 
Query:   52 GHTLSAFRDSVIGQLSGRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG-DQFQDLVYVGGIRFLPLVG 140
            GH  S+F DSV+GQL G+                L+ + +  G  +   ++++ +       L G    G +  +DL+ V GI FLPL+ 
Sbjct:   83 GHGFSSFGDSVLGQLPGKEEPHGGLDLPGGDGGPLVVVCQAAGLGSDPLEQVIHERVHDTHGLRGDPSVGVNLLEDLIDVDGIGFLPLLA 352
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786248|gb|GAXK01168320.1| (TSA: Calanus finmarchicus comp189_c35_seq8 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 5.551e-9
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG 121
            GR   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMML+ALE     G
Sbjct:  132 GRRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLMALEETPVSG 293

HSP 2 Score: 26.1794 bits (56), Expect = 5.551e-9
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 0 
Query:   52 GHTLSAFRDSVIGQLSGR 69
            GH  S+F DSV+GQL G+
Sbjct:   83 GHGFSSFGDSVLGQLPGK 136
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786245|gb|GAXK01168323.1| (TSA: Calanus finmarchicus comp189_c35_seq11 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 5.578e-9
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG 121
            GR   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMML+ALE     G
Sbjct:  132 GRRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLMALEETPVSG 293

HSP 2 Score: 26.1794 bits (56), Expect = 5.578e-9
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 0 
Query:   52 GHTLSAFRDSVIGQLSGR 69
            GH  S+F DSV+GQL G+
Sbjct:   83 GHGFSSFGDSVLGQLPGK 136
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786294|gb|GAXK01168274.1| (TSA: Calanus finmarchicus comp189_c9_seq10 transcribed RNA sequence)

HSP 1 Score: 52.7582 bits (125), Expect = 1.595e-8
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG 121
            G+   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMMLIALE     G
Sbjct:  195 GKRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLIALEETPVSG 356
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786297|gb|GAXK01168271.1| (TSA: Calanus finmarchicus comp189_c9_seq7 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 1.618e-8
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALE 115
            G+   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMMLIALE
Sbjct:  213 GKRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLIALE 356
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786251|gb|GAXK01168317.1| (TSA: Calanus finmarchicus comp189_c35_seq5 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 1.623e-8
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALE 115
            G+   T VWI+L+ M DLLL  ARR  S AILS K  TKEFM+L+A E
Sbjct:  135 GKRSLTAVWISLEVMVDLLL*CARRLASAAILSNKSFTKEFMILMAFE 278
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786246|gb|GAXK01168322.1| (TSA: Calanus finmarchicus comp189_c35_seq10 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 4.551e-8
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALE 115
            G+   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMML+ALE
Sbjct:  135 GKRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLMALE 278
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786292|gb|GAXK01168276.1| (TSA: Calanus finmarchicus comp189_c9_seq12 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 4.605e-8
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRG 121
            G+   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMML+ALE     G
Sbjct:  187 GKRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLMALEETPVSG 348
[Close]
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Match: gi|592786296|gb|GAXK01168272.1| (TSA: Calanus finmarchicus comp189_c9_seq8 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 5.021e-8
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   68 GRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALE 115
            G+   T VWI+L+ M DLLL  ARR  S AI S +  TKEFMML+ALE
Sbjct:  205 GKRSLTAVWISLEVMVDLLL*CARRLASAAIRSNRSFTKEFMMLMALE 348
[Close]
BLAST of EMLSAG00000001457 vs. L. salmonis peptides
Match: EMLSAP00000001457 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:331899:332603:1 gene:EMLSAG00000001457 transcript:EMLSAT00000001457 description:"augustus-LSalAtl2s1247-processed-gene-2.8")

HSP 1 Score: 340.887 bits (873), Expect = 1.076e-120
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MKEVYSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSYESPRMVNLFGGEGHTLSAFRDSVIGQLSGRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRGDQFQDLVYVGGIRFLPLVGPFLSSRFGDILSGFSSLLGGFPGRLKWDS 169
            MKEVYSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSYESPRMVNLFGGEGHTLSAFRDSVIGQLSGRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRGDQFQDLVYVGGIRFLPLVGPFLSSRFGDILSGFSSLLGGFPGRLKWDS
Sbjct:    1 MKEVYSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSYESPRMVNLFGGEGHTLSAFRDSVIGQLSGRIRRTEVWITLDNMEDLLLKLARRGGSTAILSKKLLTKEFMMLIALEGHQYRGDQFQDLVYVGGIRFLPLVGPFLSSRFGDILSGFSSLLGGFPGRLKWDS 169
[Close]
BLAST of EMLSAG00000001457 vs. L. salmonis peptides
Match: EMLSAP00000001453 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:334606:334887:1 gene:EMLSAG00000001453 transcript:EMLSAT00000001453 description:"augustus_masked-LSalAtl2s1247-processed-gene-2.5")

HSP 1 Score: 82.8037 bits (203), Expect = 7.818e-21
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 
Query:    1 MKEVYSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSYES 41
            MKEV SAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPS  S
Sbjct:    1 MKEVCSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSKSS 41
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001457 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001457 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 18
Match NameE-valueIdentityDescription
gi|592786237|gb|GAXK01168331.1|1.744e-960.42TSA: Calanus finmarchicus comp189_c35_seq19 transc... [more]
gi|592786249|gb|GAXK01168319.1|5.129e-955.56TSA: Calanus finmarchicus comp189_c35_seq7 transcr... [more]
gi|592786248|gb|GAXK01168320.1|5.551e-955.56TSA: Calanus finmarchicus comp189_c35_seq8 transcr... [more]
gi|592786245|gb|GAXK01168323.1|5.578e-955.56TSA: Calanus finmarchicus comp189_c35_seq11 transc... [more]
gi|592786294|gb|GAXK01168274.1|1.595e-855.56TSA: Calanus finmarchicus comp189_c9_seq10 transcr... [more]
gi|592786297|gb|GAXK01168271.1|1.618e-860.42TSA: Calanus finmarchicus comp189_c9_seq7 transcri... [more]
gi|592786251|gb|GAXK01168317.1|1.623e-858.33TSA: Calanus finmarchicus comp189_c35_seq5 transcr... [more]
gi|592786246|gb|GAXK01168322.1|4.551e-858.33TSA: Calanus finmarchicus comp189_c35_seq10 transc... [more]
gi|592786292|gb|GAXK01168276.1|4.605e-853.70TSA: Calanus finmarchicus comp189_c9_seq12 transcr... [more]
gi|592786296|gb|GAXK01168272.1|5.021e-858.33TSA: Calanus finmarchicus comp189_c9_seq8 transcri... [more]

Pages

back to top
BLAST of EMLSAG00000001457 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000014571.076e-120100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3318... [more]
EMLSAP000000014537.818e-2192.68pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3346... [more]
back to top
BLAST of EMLSAG00000001457 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001457 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001457 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001457 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1247supercontigLSalAtl2s1247:331899..332603 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s1247-processed-gene-2.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001457 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001457EMLSAT00000001457-697304Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1247:331899..332603+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001457-684223 ID=EMLSAG00000001457-684223|Name=EMLSAG00000001457|organism=Lepeophtheirus salmonis|type=gene|length=705bp|location=Sequence derived from alignment at LSalAtl2s1247:331899..332603+ (Lepeophtheirus salmonis)
ATGAAGGAAGTTTACAGCGCAGGACCTTGTCCTGGAGTATCGGGTTGTCA
TCTCCGAGATCTGCACCGCCTTCCAAATGATGGGTGCCCTTCCCTTGGTC
CCTCTGGGCCAAGTAGATCGAGCTGGGAGGCTTCTCAAGCCGACTCTACC
ATTAGATATGGAAGSTTTCTCAAGATATTTTGAAGATACTTGGATTGGGM
CCTCTTCAAACGAACCTCTATTCAGCCACGACTCATATGTCATGAAGTAT
GCATTAATTAAGGAATTGGCGTTCCTAAAAAGGACCTGATATTTCATTAT
TACTTAGGTTATGAATCCCCAAGAATGGTGAATTTATTTGGAGGAGAGGG
TCACACCCTTAGTGCCTTCAGAGACAGTGTGATTGGCCAACTCTCCGGAA
GGATAAGACGGACAGAGGTTTGGATTACTCTGGACAATATGGAGGATCTC
TTATTGAAATTAGCGAGACGTGGGGGCTCGACAGCAATTCTTTCAAAGAA
ATTATTGACGAAAGAGTTCATGATGCTCATAGCCTTGGAGGGGCACCAGT
ATCGGGGTGACCAGTTTCAAGACCTTGTATACGTAGGTGGCATAAGATTC
CTTCCTCTTGTAGGACCTTTTCTTTCTAGTAGGTTTGGTGATATCCTTTC
GGGCTTCTCCAGTCTTCTTGGTGGCTTTCCCGGTAGACTAAAGTGGGATA
GTTGA
back to top
Add to Basket