EMLSAG00000001512, EMLSAG00000001512-684278 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001512
Unique NameEMLSAG00000001512-684278
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001512 vs. C. finmarchicus
Match: gi|592845713|gb|GAXK01111831.1| (TSA: Calanus finmarchicus comp52691_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 84.7297 bits (208), Expect = 1.932e-16
Identity = 82/339 (24.19%), Postives = 154/339 (45.43%), Query Frame = 0 
Query:  172 DLSENICYDLVVGRSEAEFEELVAEISRLRLGFKDEEKRKTLSSARLQGEKEAFQYLTTYSFKNDLNKEPSGLMVSSQQLY-NIITDEIKVELISASQKSLSPLLDEIAALHCRQILNLDCQIKLYRQKYTLDRHNVLKEILLEQFSRQEMLLILLRNEF------------------------QGFK------RI-GNEVSIVNPHNDITLASLGNILNSTTPSVPLTYNKLLSSFTDFISSRKNNMMEC---ERHSQQNIILYNRSLSGLKSLYEDLGSGSKLFLPLIDEEYVSLASKLQAKVTSYQSTFVKLSEDFEKEQNTLKQYPHASVQKKLW 475
            D+++ +C +LV GR + EFE LV+EI+RLR+ F   E  +    A   G K   Q LT+   + +L  +  G+  + +++   II    K+E      K +  L+ ++A LHC+ IL  D + K+ R K  ++R   +++ILL+Q +R+E+L + +  E                           FK      R+  NE +++ P + + L +   + N        TYN +  +  D    +K    +    +   +  + L  + +S +  L     SG    + L  ++  +  + L + +   +    KL + +EKE++ LK  PH  +Q+++W
Sbjct:  758 DINDPVCLELVKGRDKQEFELLVSEINRLRVSFCQAEVTRLTYQAEEAGWKAVVQLLTS---QMNLVGQNKGITATPRRVRPEIIEPREKLE------KEMVELVGQLANLHCQHILAADYKTKVRRNKLVVERLEGVRDILLQQVTRREILTVAMNREMMEVDMVKNIFDNIIKDFKEETVKAHNFKTAMRSLRVRKNEANLIPPEDLVMLGAHRVLQNHGLVGHLATYNAVREAVEDLEIKKKKLGEKLEEFKTSRRDEVALMEKKISKVLKLLNVNDSGVTKNISLAPKDIKNGINSLDSGLKDIERVAKKLLDRWEKEKSELKIKPHLRLQREVW 1747
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BLAST of EMLSAG00000001512 vs. C. finmarchicus
Match: gi|592821009|gb|GAXK01133559.1| (TSA: Calanus finmarchicus comp4220381_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.134e+0
Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:    7 LLDFLVRMETPNIPESSDGEELDWVWE---MGGEEFLEWLXCNVHPETHLL 54
            L D++V M TP     ++G    W+W    M G+E+ EWL    H + H L
Sbjct:  122 LGDWIV-MSTP-----TEGNSRKWIWRGKWMEGQEYSEWLFLQQHHQHHCL 256
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BLAST of EMLSAG00000001512 vs. C. finmarchicus
Match: gi|592906043|gb|GAXK01052332.1| (TSA: Calanus finmarchicus comp2128563_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.976e+0
Identity = 32/116 (27.59%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:   97 LERELSSLEDFEKEMRECSKSVGRQESALASRASLIKSKLIQEQEREDIPLMEASNHKLVDEFIDKQFKVGIQ---ARDLSENICYDLVVGRSEAEFEELVAEISRLRLGFKDEEK 209
            +EREL+  +D EKE+R+    +   +  +AS+ ++I   ++  +E E     E SN KL +       K+ IQ    ++L E++  +  +   E E ++L+ EI  L++  +++EK
Sbjct:  521 MERELNKFDDLEKEIRKKDDIIKSLQYGIASKLTMIDDLMLIRKENE-----EESN-KLNN-------KICIQNNVIKELKESLKENDKISTDEEEIDKLLKEIEHLKITNREKEK 829
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BLAST of EMLSAG00000001512 vs. L. salmonis peptides
Match: EMLSAP00000001512 (pep:novel supercontig:LSalAtl2s:LSalAtl2s125:303237:306344:-1 gene:EMLSAG00000001512 transcript:EMLSAT00000001512 description:"snap_masked-LSalAtl2s125-processed-gene-3.9")

HSP 1 Score: 1026.16 bits (2652), Expect = 0.000e+0
Identity = 503/503 (100.00%), Postives = 503/503 (100.00%), Query Frame = 0 
Query:    1 MGRGKDLLDFLVRMETPNIPESSDGEELDWVWEMGGEEFLEWLXCNVHPETHLLRKNEANYREGAGPCLSDCVLEKALDALPDERSVEDVREEVDTLERELSSLEDFEKEMRECSKSVGRQESALASRASLIKSKLIQEQEREDIPLMEASNHKLVDEFIDKQFKVGIQARDLSENICYDLVVGRSEAEFEELVAEISRLRLGFKDEEKRKTLSSARLQGEKEAFQYLTTYSFKNDLNKEPSGLMVSSQQLYNIITDEIKVELISASQKSLSPLLDEIAALHCRQILNLDCQIKLYRQKYTLDRHNVLKEILLEQFSRQEMLLILLRNEFQGFKRIGNEVSIVNPHNDITLASLGNILNSTTPSVPLTYNKLLSSFTDFISSRKNNMMECERHSQQNIILYNRSLSGLKSLYEDLGSGSKLFLPLIDEEYVSLASKLQAKVTSYQSTFVKLSEDFEKEQNTLKQYPHASVQKKLWGLSSIINSGDFVHMRTKLKFFCSNCLYH 503
            MGRGKDLLDFLVRMETPNIPESSDGEELDWVWEMGGEEFLEWLXCNVHPETHLLRKNEANYREGAGPCLSDCVLEKALDALPDERSVEDVREEVDTLERELSSLEDFEKEMRECSKSVGRQESALASRASLIKSKLIQEQEREDIPLMEASNHKLVDEFIDKQFKVGIQARDLSENICYDLVVGRSEAEFEELVAEISRLRLGFKDEEKRKTLSSARLQGEKEAFQYLTTYSFKNDLNKEPSGLMVSSQQLYNIITDEIKVELISASQKSLSPLLDEIAALHCRQILNLDCQIKLYRQKYTLDRHNVLKEILLEQFSRQEMLLILLRNEFQGFKRIGNEVSIVNPHNDITLASLGNILNSTTPSVPLTYNKLLSSFTDFISSRKNNMMECERHSQQNIILYNRSLSGLKSLYEDLGSGSKLFLPLIDEEYVSLASKLQAKVTSYQSTFVKLSEDFEKEQNTLKQYPHASVQKKLWGLSSIINSGDFVHMRTKLKFFCSNCLYH
Sbjct:    1 MGRGKDLLDFLVRMETPNIPESSDGEELDWVWEMGGEEFLEWLXCNVHPETHLLRKNEANYREGAGPCLSDCVLEKALDALPDERSVEDVREEVDTLERELSSLEDFEKEMRECSKSVGRQESALASRASLIKSKLIQEQEREDIPLMEASNHKLVDEFIDKQFKVGIQARDLSENICYDLVVGRSEAEFEELVAEISRLRLGFKDEEKRKTLSSARLQGEKEAFQYLTTYSFKNDLNKEPSGLMVSSQQLYNIITDEIKVELISASQKSLSPLLDEIAALHCRQILNLDCQIKLYRQKYTLDRHNVLKEILLEQFSRQEMLLILLRNEFQGFKRIGNEVSIVNPHNDITLASLGNILNSTTPSVPLTYNKLLSSFTDFISSRKNNMMECERHSQQNIILYNRSLSGLKSLYEDLGSGSKLFLPLIDEEYVSLASKLQAKVTSYQSTFVKLSEDFEKEQNTLKQYPHASVQKKLWGLSSIINSGDFVHMRTKLKFFCSNCLYH 503
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001512 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001512 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592845713|gb|GAXK01111831.1|1.932e-1624.19TSA: Calanus finmarchicus comp52691_c1_seq1 transc... [more]
gi|592821009|gb|GAXK01133559.1|1.134e+035.29TSA: Calanus finmarchicus comp4220381_c0_seq1 tran... [more]
gi|592906043|gb|GAXK01052332.1|3.976e+027.59TSA: Calanus finmarchicus comp2128563_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001512 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015120.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s125:30323... [more]
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BLAST of EMLSAG00000001512 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001512 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001512 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001512 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s125supercontigLSalAtl2s125:303237..306344 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s125-processed-gene-3.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001512 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001512EMLSAT00000001512-697359Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s125:303237..306344-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001512-684278 ID=EMLSAG00000001512-684278|Name=EMLSAG00000001512|organism=Lepeophtheirus salmonis|type=gene|length=3108bp|location=Sequence derived from alignment at LSalAtl2s125:303237..306344- (Lepeophtheirus salmonis)
ATGGGGAGAGGTAAGGATTTACTGGACTTTTTGGTGAGAATGGAGACTCC
GAACATTCCTGAGAGCTCTGACGGAGAAGAATTGGATTGGGTTTGGGAGA
TGGGGGGAGAGGAATTTCTGGAGTGGCTCCYTTGTAACGTCCACCCYGAG
ACGCACCTCTTAAGGAAGAATGAAGCCAATTATCGTGAAGGTGCCGGACC
TTGTCTCTCGGACTGTGTCCTTGAGAAAGCCTTGGATGCACTTCCGGATG
AGAGGTCCGTGGAGGATGTCCGGGAGGAAGTGGACACATTGGAGAGGGAG
CTGTCATCTTTGGAGGACTTTGAGAAGGAGATGAGGGAGTGTAGCAAGAG
TGTGGGGAGGCAAGAGTCTGCTCTCGCTTCCAGAGCATCACTCATCAAGA
GCAAACTCATCCAGGAGCAGGAGAGGGAGGACATYCCCCTTATGGAAGCC
TCCAATCAGTACACACAACAACTAGACTTACTNCATTAGAGAACTCCACT
CCATTTCAGAATTAACATCCTTCAAAGACCCCAAAAAAATGTATGTTTAC
GTCACAATTTGGAGGTCGTCCATTTTGGGGGCATAAACAACAAAGTTTTA
TAACACGGAAAACTTTCATAATTTTTTTTACATTAAAATGAAGGAAAATA
GTCAACTATTAAATGTACAAATGGAAGGACGTAAACTTTACTGTCCGTCA
AAATTTGATCACTCAATAGCCTTGTTTTATTATCCTTCAGACCCTGAATA
GCAAATATGATATTACATCATTATAATATCTTATTTCCGTGTCGTAGATA
TAAATTAACTATTACAATAGAAATTGTAAGATATTTTAATGTAATGCAAA
TATCATTATTGTATCATTTGCATCAAGTAGTATCCAATACAAGTATCAAG
TCTTTTTTATTCTTAAAGCCATTTGATGGAGTTTCATTCAAATGTATTAA
AAATATCAACTTTGTGACCCCAAGATAGTTCCTCCTTCCATTATGATGCA
ATTTATGCCGTCAGGGAAAATGCACATTTGTATTTAACAATTAATTAAGT
AATCCATGATTTTCAGTCTGATTTCAGAGTTCAACATTGAATCTATTACA
AAAGAGGACGATAAATTTAGTAAACTTGTTGATGAATTTATCGATAAACA
ATTTAAAGTGGGAATACAAGCAAGAGATTTATCAGAGAATATATGTTACG
ATTTGGTTGTTGGAAGAAGCGAAGCGGAATTTGAAGAGTTGGTGGCTGAA
ATCTCTAGATTGAGACTAGGGTTTAAAGATGAAGAAAAAAGGAAAACTCT
ATCTTCTGCACGTTTACAGGGAGAAAAAGAGGCATTCCAATATTTAACTA
CTTATTCTTTCAAAAATGACCTGAATAAAGAACCCTCTGGATTAATGGTA
TCATCACAACAACTGTATAACATTATAACAGATGAAATTAAAGTTGAACT
GATTAGTGCCTCTCAGAAATCATTGAGTCCTCTTTTGGATGAAATTGCCG
CTCTTCATTGTCGGCAAATATTGAATTTAGACTGTCAAGTAAGGTTAATT
CTTATGACGATATAAGTGTATATCTAATTTATATTTTTTATTCATGTTTA
TCCTACAGATTAAGTTATATCGCCAAAAGTATACTCTTGATAGACATAAT
GTCTTAAAGGAGATATTATTGGAACAGTTTTCTCGACAAGAAATGCTCCT
TATTCTTCTAAGAAATGAATTTCAGGGATTCAAGCGTATTGGAAATGAAG
TGTCAAGTATTCAAGATCATCATAGAATGAAGTATAGTCAACTCNNNNNN
NNNNNNNNNNNCTATTAAGTCCATAAAGGATGAACTATCTGGTATTTTTA
CAACTACAGTTGTTAACCCACACAATGACATAACACTGGCCTCACTAGGA
AACATTTTAAACTCAACTACGCCTAGTGTACCTTTGACATATAATAAACT
CTTGTCCTCGTTCACCGACTTCATTTCTTCGCGTAAAAATAATATGATGG
AATGTGAAAGGCATTCACAACAAAATATTATACTTTATAATCGATCATTG
TCTGGCTTGAAGTCACTTTATGAAGATCTAGGGAGTGGTTCTAAGCTTTT
TTTGCCATTAATTGATGAAGAATATGTGTCTCTTGCATCTAAACTACAGG
CAAAAGTAACGAGCTATCAGTCAACTTTTGTAAAATTATCTGAGGATTTT
GAAAAAGAACAAAACACTTTAAAGCAATATCCACATGCATCTGTTCAAAA
AAAACTATGGGTGAATTTCTTGAATAATCCTAAACTAATGGAGGCGAATG
TTAACTCGTTGCTAAATAAAGTCAAAAATATCTGAAACACTTTGAAATCG
TATTTTCATAATGTTGTCAAAATGAATAAATTATTTATAATCGAGTTTAT
AATACCTTACCCRTTGAAATTTTTTATTATGGCTGTTTTGATAGATATTG
AAGGAGGATATTTGAGACACAGACATCAATACAATTGCACATACGGCGAT
ATTCACAAAATTTTGCATCTGTTAAAAAAATAAGATAATTTGATTCAATG
TTACATTTATTATTTTTTTTGATACTATGCATTGCTAAAAGTATGGGGAA
TATATAAATTAACCATAAACTTATTGAATACACCTTTTTCTTTTTTTGAA
CGATAATTAATGTATCATCTAAAATATCAACTTTATTGTAGATAAATTCT
CATTTCCTATCTAATAAGATAATCGGAACAGTTTCTGAAGAAAATTATAA
CATTAATTCTAATATAAAAAAAAGTATATTTTTTACGGGCCCGTTAAACA
TAGAATAATACACCGTTTGCTTCGGGTTTTCATTTCATAACTTTTTTAAG
TTTAATCAAACATTCACCTATATGCAATAAGAATAAAATGTCAGTTTGTA
GCCTTAACTCACTTATTGTTTGTATAGAATTACAGATTCGAAGAATAAGT
CTGAGTGAACAATCCCCCGGACTGTAAAAATATTGTTGTATCTATATTTT
TAACTATATTACATTTCATAGGGTCTATCATCTATTATTAATTCTGGGGA
TTTTGTTCATATGAGAACAAAGCTTAAATTCTTCTGTTCCAATTGTTTAT
ACCATTAG
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