EMLSAG00000001524, EMLSAG00000001524-684290 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001524 vs. GO
Match: - (symbol:ostf1 "osteoclast stimulating factor 1" species:7955 "Danio rerio" [GO:0005737 "cytoplasm" evidence=IEA] Pfam:PF00018 InterPro:IPR002110 InterPro:IPR001452 PRINTS:PR00452 PROSITE:PS50002 PROSITE:PS50088 SMART:SM00248 SMART:SM00326 ZFIN:ZDB-GENE-040625-157 Gene3D:1.25.40.20 InterPro:IPR020683 SUPFAM:SSF48403 PROSITE:PS50297 SUPFAM:SSF50044 GeneTree:ENSGT00740000115521 CTD:26578 OrthoDB:EOG7N0C61 TreeFam:TF314534 EMBL:BX950216 RefSeq:XP_005165078.1 UniGene:Dr.151891 UniGene:Dr.79778 Ensembl:ENSDART00000128714 GeneID:405783 KEGG:dre:405783 OMA:SEMSKPP Bgee:F1QKX6 Uniprot:F1QKX6) HSP 1 Score: 42.743 bits (99), Expect = 9.884e-5 Identity = 25/84 (29.76%), Postives = 42/84 (50.00%), Query Frame = 0 Query: 5 NKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSR-----NERNASL 83 NK D NTS + A G D+V IL+ N + ++NK+G TP+ A ++ +V++ K++R NE+ +L Sbjct: 95 NKVGINGLDKAGNTSLYWACHGGHKDVVEILLSQPNCEL-NQQNKLGDTPLHAAAWKGYSDIVEMLLNKNARTDVVNNEKKTAL 177
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592834378|gb|GAXK01123166.1| (TSA: Calanus finmarchicus comp1697167_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 1.686e-5 Identity = 21/69 (30.43%), Postives = 42/69 (60.87%), Query Frame = 0 Query: 11 SRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNER 79 S+D++ NT+ H+A+ +G V +L+ + I RN G+T +++ARD + + VVQ+ ++ N++ Sbjct: 192 SQDVNGNTALHIASYQGHPSTVFLLLSWGAGII---RNTQGRTALDVARDEEEDEVVQILDEWNTENDQ 389
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592757564|gb|GAXK01196849.1| (TSA: Calanus finmarchicus comp5309221_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 7.232e-5 Identity = 20/53 (37.74%), Postives = 31/53 (58.49%), Query Frame = 0 Query: 7 CPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELAR 59 C ++D++ T HLAA G DIV +LIV I+ +R+K TP+ L++ Sbjct: 377 CSIHNQDVEGRTPLHLAALEGNNDIVHLLIVHG--AILDKRDKQNATPLHLSQ 529 HSP 2 Score: 40.817 bits (94), Expect = 9.791e-5 Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0 Query: 13 DIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLF--QGK--DSRNERNAS 82 DID T HLAA RG D+V+ LI + I ++ G+TP+ LA N +V L G D R+++NA+ Sbjct: 296 DIDKKTPLHLAALRGHRDVVKFLI--NENCSIHNQDVEGRTPLHLAALEGNNDIVHLLIVHGAILDKRDKQNAT 511
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592795310|gb|GAXK01159258.1| (TSA: Calanus finmarchicus comp2984531_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 2.954e-4 Identity = 21/68 (30.88%), Postives = 38/68 (55.88%), Query Frame = 0 Query: 13 DIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARD-GQFNSVVQLFQGKDSRNER 79 D++NNT+ HLAA I++IL+ S + N++G+TP+ A + G FN + + + +N+ Sbjct: 439 DLENNTALHLAAEHKHDGILKILLECS--EDYKPANRIGRTPLHTAAEFGAFNCIESIINTVELKNQE 636
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592929455|gb|GAXK01029090.1| (TSA: Calanus finmarchicus comp587399_c0_seq3 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 6.013e-4 Identity = 28/72 (38.89%), Postives = 31/72 (43.06%), Query Frame = 0 Query: 6 KCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKM-------GKTPMELARDGQFNSVVQLF 70 +C T D T HLAAS GF DI R+L I R M G TP+ LA G VVQL Sbjct: 840 RCSTSVLDSGGLTPLHLAASLGFADIARML--------IDNRADMNCGSSAGGDTPLHLATAGNHPEVVQLL 1031
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592929456|gb|GAXK01029089.1| (TSA: Calanus finmarchicus comp587399_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 6.045e-4 Identity = 28/72 (38.89%), Postives = 31/72 (43.06%), Query Frame = 0 Query: 6 KCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKM-------GKTPMELARDGQFNSVVQLF 70 +C T D T HLAAS GF DI R+L I R M G TP+ LA G VVQL Sbjct: 840 RCSTSVLDSGGLTPLHLAASLGFADIARML--------IDNRADMNCGSSAGGDTPLHLATAGNHPEVVQLL 1031
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592929457|gb|GAXK01029088.1| (TSA: Calanus finmarchicus comp587399_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 6.076e-4 Identity = 28/72 (38.89%), Postives = 31/72 (43.06%), Query Frame = 0 Query: 6 KCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKM-------GKTPMELARDGQFNSVVQLF 70 +C T D T HLAAS GF DI R+L I R M G TP+ LA G VVQL Sbjct: 840 RCSTSVLDSGGLTPLHLAASLGFADIARML--------IDNRADMNCGSSAGGDTPLHLATAGNHPEVVQLL 1031
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592898159|gb|GAXK01060216.1| (TSA: Calanus finmarchicus comp3911442_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 3.010e-3 Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0 Query: 11 SRDIDNNTSFHLAASRGFYDIVRILIVFSNFRI-IRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNERN 80 SRD+ NT H+A++ GF V+ L+ +NF+ I ++N+ KT + LA G V++L KD R+ Sbjct: 107 SRDMYENTPLHIASNMGFKKSVKELLE-NNFKARIDQKNEDEKTAIHLASAGGHEEVLKLLLKKDPNGIRD 316
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592839112|gb|GAXK01118432.1| (TSA: Calanus finmarchicus comp125796_c0_seq2 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 4.246e-3 Identity = 17/62 (27.42%), Postives = 31/62 (50.00%), Query Frame = 0 Query: 11 SRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQG 72 S D D N++ HLA S+G + + F++ + ++N +GK+ + LA +L G Sbjct: 458 SADADGNSALHLACSKGMSKSANLFLKFASSEFVSKQNCLGKSALHLAAGQGLVETTELLLG 643
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592839113|gb|GAXK01118431.1| (TSA: Calanus finmarchicus comp125796_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 4.271e-3 Identity = 17/62 (27.42%), Postives = 31/62 (50.00%), Query Frame = 0 Query: 11 SRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQG 72 S D D N++ HLA S+G + + F++ + ++N +GK+ + LA +L G Sbjct: 647 SADADGNSALHLACSKGMSKSANLFLKFASSEFVSKQNCLGKSALHLAAGQGLVETTELLLG 832
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Match: gi|592808920|gb|GAXK01145648.1| (TSA: Calanus finmarchicus comp1302499_c0_seq4 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.459e-2 Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 0 Query: 13 DIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELA 58 D++NNT+ HLAA I++IL+ S+ RE N++GKT + A Sbjct: 25 DLENNTALHLAAEHRQDGILKILLDSSDNH--REANRIGKTALHTA 156
BLAST of EMLSAG00000001524 vs. L. salmonis peptides
Match: EMLSAP00000001524 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1261:4333:20976:-1 gene:EMLSAG00000001524 transcript:EMLSAT00000001524 description:"maker-LSalAtl2s1261-augustus-gene-0.4") HSP 1 Score: 172.17 bits (435), Expect = 7.148e-57 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 Query: 1 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNERNASL 83 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNERNASL Sbjct: 1 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNERNASL 83
BLAST of EMLSAG00000001524 vs. nr
Match: gi|225714042|gb|ACO12867.1| (Ankyrin repeat domain-containing protein 28 [Lepeophtheirus salmonis]) HSP 1 Score: 167.933 bits (424), Expect = 1.077e-49 Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0 Query: 1 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKMGKTPMELARDGQFNSVVQLFQGKDSRNERNAS 82 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNK+GKTPMELARDGQFN VVQLFQGKDSRNERNAS Sbjct: 243 MLETNKCPTRSRDIDNNTSFHLAASRGFYDIVRILIVFSNFRIIRERNKVGKTPMELARDGQFNFVVQLFQGKDSRNERNAS 324 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001524 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000001524 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000001524 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001524 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001524 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001524 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000001524 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1261:4333..20976- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001524-684290 ID=EMLSAG00000001524-684290|Name=EMLSAG00000001524|organism=Lepeophtheirus salmonis|type=gene|length=16644bp|location=Sequence derived from alignment at LSalAtl2s1261:4333..20976- (Lepeophtheirus salmonis)back to top Add to Basket
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