EMLSAG00000001541, EMLSAG00000001541-684307 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001541
Unique NameEMLSAG00000001541-684307
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001541 vs. C. finmarchicus
Match: gi|592760209|gb|GAXK01194204.1| (TSA: Calanus finmarchicus comp5662894_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.830e+0
Identity = 17/52 (32.69%), Postives = 27/52 (51.92%), Query Frame = 0 
Query:   21 YNVMTEISIPVVDYFKDAYIGPLQLHGFLIFKYSLASLQSTQMKSAMSLGIF 72
            YN++ ++   VV    D  +GP   H  +IFK     ++  QMKSA S  ++
Sbjct:   16 YNLILQVEEIVVHDKYDKKVGPENGHDIVIFK-----VKEDQMKSAESKRVY 156
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BLAST of EMLSAG00000001541 vs. C. finmarchicus
Match: gi|592750054|gb|GAXK01204359.1| (TSA: Calanus finmarchicus comp5277970_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 7.513e+0
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 0 
Query:   58 LQSTQMKSAMSLGIFNSLTHKNPGSSANVEKLNT 91
            +Q+   ++ + LG  NSL  KN G+ A + K+NT
Sbjct:  278 IQNKDDQNGILLGEKNSLEMKNSGAEARLSKINT 379
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BLAST of EMLSAG00000001541 vs. L. salmonis peptides
Match: EMLSAP00000001541 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:105991:106672:-1 gene:EMLSAG00000001541 transcript:EMLSAT00000001541 description:"snap_masked-LSalAtl2s1269-processed-gene-0.7")

HSP 1 Score: 192.2 bits (487), Expect = 1.878e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQLHGFLIFKYSLASLQSTQMKSAMSLGIFNSLTHKNPGSSANVEKLNTFED 94
            MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQLHGFLIFKYSLASLQSTQMKSAMSLGIFNSLTHKNPGSSANVEKLNTFED
Sbjct:    1 MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQLHGFLIFKYSLASLQSTQMKSAMSLGIFNSLTHKNPGSSANVEKLNTFED 94
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BLAST of EMLSAG00000001541 vs. L. salmonis peptides
Match: EMLSAP00000002693 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1554:9036:9634:-1 gene:EMLSAG00000002693 transcript:EMLSAT00000002693 description:"snap_masked-LSalAtl2s1554-processed-gene-0.4")

HSP 1 Score: 86.2705 bits (212), Expect = 5.261e-23
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0 
Query:    1 MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQ--LHGFLIFKYSLASLQSTQMKSAMSLGIFN-SLTHKNPGSSANVEKLNT 91
            ML   AFIPP E IEAFEI+Y+VM EI IP VDYF+D YI      +  FLIFK  L  L S    + +S    N +LTHKNPGSSANV +LNT
Sbjct:    1 MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIAAFNFMVDVFLIFK-RLTCLSSVH-TNEISYETRNLTLTHKNPGSSANVAELNT 92
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BLAST of EMLSAG00000001541 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3")

HSP 1 Score: 55.0694 bits (131), Expect = 1.590e-10
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:    1 MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQLH 46
            ML+  AF+P  + IE FE L   M +I  P++DYF+D YIG LQL 
Sbjct:  128 MLSAIAFVPVDQTIEVFEALSETMPDIGQPIIDYFEDTYIGRLQLQ 173
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001541 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001541 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592760209|gb|GAXK01194204.1|1.830e+032.69TSA: Calanus finmarchicus comp5662894_c0_seq1 tran... [more]
gi|592750054|gb|GAXK01204359.1|7.513e+038.24TSA: Calanus finmarchicus comp5277970_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001541 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000015411.878e-64100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:1059... [more]
EMLSAP000000026935.261e-2356.38pep:novel supercontig:LSalAtl2s:LSalAtl2s1554:9036... [more]
EMLSAP000000055471.590e-1050.00pep:novel supercontig:LSalAtl2s:LSalAtl2s297:42429... [more]
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BLAST of EMLSAG00000001541 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001541 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001541 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001541 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1269supercontigLSalAtl2s1269:105991..106672 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1269-processed-gene-0.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001541 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001541EMLSAT00000001541-697388Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1269:105991..106672-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001541-684307 ID=EMLSAG00000001541-684307|Name=EMLSAG00000001541|organism=Lepeophtheirus salmonis|type=gene|length=682bp|location=Sequence derived from alignment at LSalAtl2s1269:105991..106672- (Lepeophtheirus salmonis)
ATGCTAACAGGTTTTGCTTTCATACCACCAGGAGAAGTCATTGAGGCATT
TGAAATTCTTTACAATGTTATGACTGAAATATCAATCCCAGTGGTTGATT
ACTTCAAAGATGCATACATTGGTCCCCTTCAACTTCATGGTCATACGTCC
GAGACCGAACTTATAGTAGTCTGCCTCGTACATATAACCACGTTGGAGGA
TGGCACATGCATTTTCTAGCTAATGTGGAGGCTCATCATCCAAATCTATG
GACCTTCCTTAATGTACTTGAACGGGAACATAGTATCACCAATGTTATAT
TACTAAGATGATGGCTGGGGAAGGGCTGCCTCCTCAAGGTCGAAAATACC
AATCAATTAATAGAATATTAAAAAACACTGTCGAAAATTATCATAATTTA
ACTCAATTAGAATTTTTAAGAGGCGTAGCTCTCAACATTTAGCTATAAAT
TTTTTTAATTATGTTAATTTCTATTTTTTTTTTTCTTTTTCTACAATAAA
TTAGTATTTTTCACATTTTATTGCTTCATATTTTAGGTTTTTTAATATTT
AAATACTCACTTGCCTCTCTTCAGTCCACACAAATGAAATCAGCTATGAG
TCTAGGAATCTTCAATAGTTTGACTCACAAAAACCCAGGTAGTTCAGCTA
ATGTTGAAAAATTGAACACTTTTGAGGATTGA
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