EMLSAG00000001547, EMLSAG00000001547-684313 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001547
Unique NameEMLSAG00000001547-684313
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001547 vs. C. finmarchicus
Match: gi|592821172|gb|GAXK01133396.1| (TSA: Calanus finmarchicus comp1333449_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.419e+0
Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 0 
Query:   18 ILDSREEGACLKNLVLFCRCHCPQNRFPQN 47
            +L+S+    CL+ L+ F R H P +  P N
Sbjct: 1967 VLESKHGHVCLQKLIQFLRMHLPMDEGPSN 2056
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BLAST of EMLSAG00000001547 vs. L. salmonis peptides
Match: EMLSAP00000001547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s126:204011:204350:-1 gene:EMLSAG00000001547 transcript:EMLSAT00000001547 description:"maker-LSalAtl2s126-snap-gene-2.23")

HSP 1 Score: 150.214 bits (378), Expect = 1.295e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MNRNISGSSLSFNPRFSILDSREEGACLKNLVLFCRCHCPQNRFPQNLKSPYISKPYEYPSSKTLLKEIQHSE 73
            MNRNISGSSLSFNPRFSILDSREEGACLKNLVLFCRCHCPQNRFPQNLKSPYISKPYEYPSSKTLLKEIQHSE
Sbjct:    1 MNRNISGSSLSFNPRFSILDSREEGACLKNLVLFCRCHCPQNRFPQNLKSPYISKPYEYPSSKTLLKEIQHSE 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001547 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001547 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592821172|gb|GAXK01133396.1|1.419e+036.67TSA: Calanus finmarchicus comp1333449_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001547 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015471.295e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s126:20401... [more]
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BLAST of EMLSAG00000001547 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001547 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001547 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001547 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s126supercontigLSalAtl2s126:204011..204350 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s126-snap-gene-2.23
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001547 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001547EMLSAT00000001547-697394Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s126:204011..204350-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001547-684313 ID=EMLSAG00000001547-684313|Name=EMLSAG00000001547|organism=Lepeophtheirus salmonis|type=gene|length=340bp|location=Sequence derived from alignment at LSalAtl2s126:204011..204350- (Lepeophtheirus salmonis)
ATGAATAGAAACATTTCAGGATCATCACTTTCATTCAATCCAAGGTTTTC
CATATTGGACTCAAGGGAGGAAGGTGCTTGTTTAAAGAACTTGGTTCTTT
TTTGCAGGTACGTAGTGAGCAGAATGGCAGMTACAGTATATTGAAACAAA
TCCTCGGGTGATAAATCATCAACGTGATCCATAAGATTAAATACCTTAAT
GTAACTATTCTTCTTTTCATTACAGATGTCATTGTCCACAAAATCGATTT
CCTCAAAATTTAAAGAGCCCTTATATTTCCAAACCTTATGAATATCCTTC
ATCAAAGACTTTATTAAAGGAAATCCAGCATTCAGAATGA
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