EMLSAG00000001556, EMLSAG00000001556-684322 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001556
Unique NameEMLSAG00000001556-684322
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001556 vs. C. finmarchicus
Match: gi|592869548|gb|GAXK01088014.1| (TSA: Calanus finmarchicus comp159982_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.727e+0
Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 0 
Query:    2 NSRTFLEATHEKNRKSGSVYSNV 24
            ++RTF E++H+KN   G ++SNV
Sbjct:   65 SARTFSESSHKKNNLIGDLFSNV 133
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BLAST of EMLSAG00000001556 vs. L. salmonis peptides
Match: EMLSAP00000001556 (pep:novel supercontig:LSalAtl2s:LSalAtl2s126:346488:348288:1 gene:EMLSAG00000001556 transcript:EMLSAT00000001556 description:"maker-LSalAtl2s126-snap-gene-3.17")

HSP 1 Score: 139.428 bits (350), Expect = 1.890e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MNSRTFLEATHEKNRKSGSVYSNVDAMSLDDFQGVFLIYGIGLGLSIIGFGIEYFKTGKKYQDXHFRDY 69
            MNSRTFLEATHEKNRKSGSVYSNVDAMSLDDFQGVFLIYGIGLGLSIIGFGIEYFKTGKKYQDXHFRDY
Sbjct:    1 MNSRTFLEATHEKNRKSGSVYSNVDAMSLDDFQGVFLIYGIGLGLSIIGFGIEYFKTGKKYQDXHFRDY 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001556 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001556 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592869548|gb|GAXK01088014.1|1.727e+047.83TSA: Calanus finmarchicus comp159982_c0_seq2 trans... [more]
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BLAST of EMLSAG00000001556 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015561.890e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s126:34648... [more]
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BLAST of EMLSAG00000001556 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001556 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001556 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001556 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s126supercontigLSalAtl2s126:346488..348288 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s126-snap-gene-3.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001556 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001556EMLSAT00000001556-697403Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s126:346488..348288+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001556-684322 ID=EMLSAG00000001556-684322|Name=EMLSAG00000001556|organism=Lepeophtheirus salmonis|type=gene|length=1801bp|location=Sequence derived from alignment at LSalAtl2s126:346488..348288+ (Lepeophtheirus salmonis)
GTTGTAGATGGAGGCTACGCCTTTATGAACTCTAGAACATTCCTCGAGTA
TTTGATTTCTTCTAAGTATACAAATCAATATAGNAGAAAAAGAGCTCCRT
ATAACTTCACAGTGTTTTGTTCCTTTTCGAATTGGATTGGCAATGCCAAT
GTCATCCCCGTACAAGTATGTAGAATTTATCTAACAAATATTAAATATGT
ACATTAGCCCTGTTAATTTAAGAGAATACCAAAAAAGACTGGGGAAAAAA
TTTAAAAAAACAATCATTTTTTCATATCTGGGGTAAAATGTACCCATGGG
CACAAATAAAGGGTTAATAACATATTTATAAAAATTAAAGCACAGTTTAA
CAGTAAATTTTCAAGGCTTATGTGGCAGGCATAACTGGAGTCCAAAAAAC
AAATGACTGATATATTTAGTTTTTATAGACCTTGGAGAACAAGAAAAATT
CCAATACTAAAGGGTTTAGAAAAAAAGTTAAAATTTGAACAAGTTTATTG
TACAAACATGAAAACACAACCTATAATTGGTATGAAAAATTGTCCATAAT
TTATTAATAGTTTGAAAAATAGTGTTTCGCTAAGACTAATTTAATCAATC
TATCACATCGCTACTTTACTCTACATATAACACAACCTTTCCCCGAAAAA
AATTTAAAAAGGAATAAAATCAGTAGATAGTTGGCTAATTCTTCCCAACT
CTAGTGCTATTATTCAAAAATTGCTATTATTGGTTCACAAGATGAGCGAA
TGATTGAAGCTATAATAAGACTTTACATTATTTTTCCTAACATCAATTAA
TTATCAAAAATTTCTACTCAAGAAATGATACTTTACTATGCCAAACTGAC
AATCAAAATCTATTTGTTGTCTCTATGGTTCACAAATTAACAAGAAGGAA
TTCAAATTCAATCAATTACGTTCAAAAAATTAATGAGGGAAGGAACCAGA
AAATTTGGCATAGTAAATTTTTATATTAATAAAGTAACTTTGTGATGTTT
ATGTAGGATCGATAAAAGTTCCACAAATGGATATTTTACTATTGGGCAAC
ACCTTAACCATACATTGAAATTCTAAAGTTATAACTTTTTTATATCCTTA
TATACATGGAAAAACTTTTTTAAATTATAAATATATATCCGACACTTCTC
CGACAAGCATTATTCCTAATACTCTTAAATTTCAGCAAATGTGATTTATA
AATTATATCTTTCAATTCCAGAAAAGCTTTTGATAAAGTGGTTCTATCCA
CAATCGAAGCAGGTCTAATTGAACTATGGCTACGAAATAGTAACATGGAA
GCTGAAAGGAATAACAGGTATTTCATTATCCTTTATTTGTAAAAAAATAT
TGACTAATATAAAACGTATCAAAAGAGCAACACACGAGAAAAATCGAAAA
AGTGGGTCAGTATATTCAAATGTTGACGCCATGAGCCTCGATGACTTTCA
AGGAGTATTTCTGATATATGGAATTGGGCTGGGATTAAGCATTATTGGAT
TCGGAATTGAGTATTTCAAAACTGGTAAAAAATATCAAGATNTCCACTTC
AGGGATTATTAACACTCACGAAATGTACAAGCTGTCTACAAAAACATCCT
TTATATTTCCCTATTGAAGTAATCATAATCAAAATACATTAACAAAAATA
AACCTAATGACTGTCTTTTTAAACTGTGCATATTACAAAATATATACAAT
CTTCTAAACTGGGTTTTTTTCTGGTAACTAGACTACTTTCCCCAGACCTT
TTCGCCCTAGGATCTTTAGTATTCGTGTATATATTATAGCATAAATATAT
C
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