EMLSAG00000001557, EMLSAG00000001557-684323 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001557
Unique NameEMLSAG00000001557-684323
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001557 vs. C. finmarchicus
Match: gi|592939301|gb|GAXK01019252.1| (TSA: Calanus finmarchicus comp81595_c20_seq6 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.559e+0
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 0 
Query:   47 NGRCKMDPPETSVLKKTKPRSDMSPYNLSNLLEEQVSIIPTLLMDSIFE 95
            N +  M  P+T++ K T   S +SP   S + + QVS++P+    ++FE
Sbjct:  331 NSKQSMSTPKTTLSKATNVISSISPIPKSIIAQPQVSLVPSPAPCALFE 477
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BLAST of EMLSAG00000001557 vs. L. salmonis peptides
Match: EMLSAP00000001557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s126:349317:351094:-1 gene:EMLSAG00000001557 transcript:EMLSAT00000001557 description:"maker-LSalAtl2s126-snap-gene-3.19")

HSP 1 Score: 201.06 bits (510), Expect = 6.730e-68
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MPPVIPGFSQFFLSDHSMGSWTNRWSLEFSFGAFSYQRIFGNVLRQNGRCKMDPPETSVLKKTKPRSDMSPYNLSNLLEEQVSIIPTLLMDSIFELV 97
            MPPVIPGFSQFFLSDHSMGSWTNRWSLEFSFGAFSYQRIFGNVLRQNGRCKMDPPETSVLKKTKPRSDMSPYNLSNLLEEQVSIIPTLLMDSIFELV
Sbjct:    1 MPPVIPGFSQFFLSDHSMGSWTNRWSLEFSFGAFSYQRIFGNVLRQNGRCKMDPPETSVLKKTKPRSDMSPYNLSNLLEEQVSIIPTLLMDSIFELV 97
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001557 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001557 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592939301|gb|GAXK01019252.1|4.559e+032.65TSA: Calanus finmarchicus comp81595_c20_seq6 trans... [more]
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BLAST of EMLSAG00000001557 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015576.730e-68100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s126:34931... [more]
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BLAST of EMLSAG00000001557 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001557 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001557 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001557 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s126supercontigLSalAtl2s126:349317..351094 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s126-snap-gene-3.19
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001557 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001557EMLSAT00000001557-697404Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s126:349317..351094-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001557-684323 ID=EMLSAG00000001557-684323|Name=EMLSAG00000001557|organism=Lepeophtheirus salmonis|type=gene|length=1778bp|location=Sequence derived from alignment at LSalAtl2s126:349317..351094- (Lepeophtheirus salmonis)
ATGCCTCCAGTGATCCCAGGATTTAGTCAGTTCTTTCTCTCAGACCACAG
CATGGGGTGAGTACCGAGTAGCTCTTGATTCTACTTTTTGTTTTTAATTT
TGAGGATGATAATTTTAGCCCCGTACTGCTTGACACCCGGAGAAATCCTC
GTTGTAGAGCAATGAGAAGGACTCCGGGCTGAATGATTATAATGAGGTTC
TGAAAAGTCAATATCCTCTGTAGAGTTGCAATAGCTCATGCTTGATGCAT
TTTTTCTAATCTATCCTTTTTTATTATTATTATTAGTTCCTGGACGAATC
GTTGGAGCCTCGAGTTTTCTTTTGGAGCTTTTTCATACCAAAGGTAATTT
CTAAAGTCAATTATGTTTGTTGCCTCCTCTCTTTCCTTAAATGATGAGAT
TTTTAGCCCCGTACTGCTTGACACTCTGGAGTTGTCCCTTTTAATCTACT
AAAGTGATACCTCCACAGTGAAATGATTACATTGAGGTTCTGAATGAACT
CTCTAACATGAAGAATATTTCCTTTTAGTTCTTGGATGATAATCCTTCTT
TTGTTTTTTTAGAATATTTGGGAATGTCCTTCGACAAAACGGGAGATGCA
AAATGGATCCTCCTGAGACTTCAGGTACTAATTTACCGTAAGACGACCAA
ATTTGAATGAAGATAAAACTTTGAATTACCATTTTAAGTTTTAAAGAAAA
CCAAACCAAGGTCTGATATGTCTCCCTATAATCTGAGTAATCTCTTAGAA
GAACAGTGAGGAATTCCAATAACTCAAAAGGTAATAATACGCTACTTCCC
TCTTTCTTAGATTACTTACTTACTGTGATGATAACAAAAACTTACCAGTT
CTGCTTCTGACAAGTTTTCTGAAGAACGTTTAATCCCACAGCGAACTGAG
ATCTTTGAATCATTTAATTTAGCTTGAAGTTTTTCATGGGGGCATCATTT
TAATCCTCTCTCTTTATTTCTCTTCATAGGTGATTCTCGGCCAAAAAGGG
ATAATAAATGTATGGACTCTGCTACTCTTCCAATACTAAGGTAATAATCT
ATGATTCGATCTTTAACCAATATTCAACCATGATGATAACAAAAACTTAC
CAGTTCTGCTTCTGACAAGTTTTCTGAAGAACGTTTAATCCCACAGCGAA
CTGAACTATTGGTTAAATCTTGAACCCTATTTGTAATCATCTCCTAAGAT
TCTAATGCTCTCTTTTTTTTTTAAATCTCTTCTATAGGTAATTCATCCTG
AACTGTTGAGAAAATATAATCCTGGAGTTCTTTAAAAGGTAATTTACCCT
GCATAATTAATCTATTGCATTTCTGAATGATGAATCCAAAGTCGTGCAGC
TTATCATGATAACTTCGTGATCTTAACAAACTTTCAGTGTAGCTCTGAGC
CACTATCTCTGACTATTTCATTCCATAATCAAGGCTCGAAAACTCGTTTC
TGATGTATTTTCATTCCCTTCTTATTAGGTCTTTATCAAGGAGGGAACGG
TGAGGAAAGTAGATCCATGAAGTACTCCATAAGGTAATTTATACATAAAA
ATTAATCTTTACTTCATTTCTTTTCTGAATGATGAATCCAAAGTCGTGCA
GCTTATCATGATAACTTCGTGATCTTAACATACTTTCAGTGTAGCTCTGA
GCCACTATCTCTTACTATTTTATTCCATAGTCAAGGCTCCAAAACTCACT
TCTAATGYATTTTCTTTTCTTATTAGGGTTTCAATCATTCCAACTCTTCT
AATGGACTCTATTTTTGAGCTAGTGTGA
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