EMLSAG00000001583, EMLSAG00000001583-684349 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592769655|gb|GAXK01184913.1| (TSA: Calanus finmarchicus comp3182409_c0_seq1 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 4.463e-8 Identity = 38/134 (28.36%), Postives = 66/134 (49.25%), Query Frame = 0 Query: 114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTH--ACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLW 245 IGI P + + + + ++GM+ + I Y+QY +F +F +H AC AL S LS A +L+ Q+I+I ID MQNA ++ A++ +L P A+ Q T+I ++ + ++ Sbjct: 38 IGIGLAGIFPSIKGFMQWIRRPVLVVGMLLYIGIYYYQYKNFLDIFSTSHLAACASLALGS--AFLSCITAFFCNLNTRQIISIVIDCTMQNATLSYAVVAGSLKEPEVQYASSPANAQVLFTSIPIMVTWFMY 433
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592796059|gb|GAXK01158509.1| (TSA: Calanus finmarchicus comp66148_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 3.985e-5 Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = 0 Query: 114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYL 251 IG++ + LPK++ ++ + L + +I L + RL D A + FAL +G A +I I ++T +QN +A ML L P+ D+AA+ + LT LL+A V +NL L Sbjct: 965 IGVSIRKCLPKVADFMVKIMKPLALFLIIFILVCGIWSQFFMIRLIDWKIAAVGFALPWLGFAFGCLFAKLCRRERKDIIAIAVETGIQNTGMAIFMLWFTLDHPAGDLAAVVPVAVATLTPFPLLAALVYYNLKNRL 1378
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592867734|gb|GAXK01089828.1| (TSA: Calanus finmarchicus comp6614115_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 1.287e-4 Identity = 27/116 (23.28%), Postives = 57/116 (49.14%), Query Frame = 0 Query: 114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMG 229 IG+ K+ PK ++ + + ++L ++ + + + FF L+ H +L +G ++S +A+ QVI I ++T +QN+ A ++ L SP D+ ++ +G Sbjct: 185 IGVAVKYKWPKRAESLNKISRPFYLLTLVILPSLGLYVNLHFFYLYTWRHLVSGASLGFLGFIVSAALAALLQQGKQQVIAISLETALQNSGFAAVVINTTLTSPYSDMGLLAPLG 532
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592754339|gb|GAXK01200074.1| (TSA: Calanus finmarchicus comp854871_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 2.478e-3 Identity = 33/120 (27.50%), Postives = 54/120 (45.00%), Query Frame = 0 Query: 114 IGITFKHFLPKLSKLILSVYSY-LFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFF 232 IG+ + P L++ I + + L++L ++ + I FF L H +L G L A + +QVI + I+T +QN IA +L PSP D+A + + FF Sbjct: 367 IGLWIRRVRPALAETIRTKFGRPLWLLCLLAIVIGGVVMNIFFFYLVTWRHLLAGASLGFFGYTLGGGAALLARMERSQVIAVAIETAIQNGGIAVVVLNLTFPSPYSDMALLPILAFFF 726
BLAST of EMLSAG00000001583 vs. L. salmonis peptides
Match: EMLSAP00000001583 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:93338:94821:-1 gene:EMLSAG00000001583 transcript:EMLSAT00000001583 description:"maker-LSalAtl2s1274-snap-gene-0.30") HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 Query: 1 MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ 263 MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ Sbjct: 1 MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ 263
BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Match: EFX76606.1 (hypothetical protein DAPPUDRAFT_248773 [Daphnia pulex]) HSP 1 Score: 52.7582 bits (125), Expect = 4.551e-7 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0 Query: 156 FRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTK 254 F L D T A++ G V A L Q+I + ++T MQNANIA +L LP+P D+AA+ + Q +TT IL + + +R +K + Sbjct: 362 FILLDWTLLTAGLAVTVAGFVFGAFFAWITRLGRPQIIAVSLETAMQNANIAFVLLKTTLPTPYSDIAALPAIAQILMTTSILFIFFGIIMAYRCVKNR 460
BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Match: gb|KFM58135.1| (Sodium/bile acid cotransporter 5, partial [Stegodyphus mimosarum]) HSP 1 Score: 50.8322 bits (120), Expect = 9.533e-7 Identity = 38/141 (26.95%), Postives = 74/141 (52.48%), Query Frame = 0 Query: 114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSS---IGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLH-RY 250 +G+ F+ +LP+++K + + + I MI LFI+ F + +F + I+ A ++ +G + I+ T L L ++ + ++T +QN IA +L +L P D+AA+ + +T + LL AY++ + RY Sbjct: 65 VGLAFQKWLPRVAKFCRRILAPVSI-AMI--LFIIIFGTYANLYMFKLFTWTILIAAAANVWLGFLFGTLISKTCDLRLEDIVAVAVETGVQNTGIAIVLLGFSLEQPEADLAAVIPVAASIMTPLPLLCAYLVLKIRSRY 202 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001583 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000001583 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001583 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 2
BLAST of EMLSAG00000001583 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001583 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1274:93338..94821- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001583-684349 ID=EMLSAG00000001583-684349|Name=EMLSAG00000001583|organism=Lepeophtheirus salmonis|type=gene|length=1484bp|location=Sequence derived from alignment at LSalAtl2s1274:93338..94821- (Lepeophtheirus salmonis)back to top Add to Basket
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