EMLSAG00000001583, EMLSAG00000001583-684349 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001583
Unique NameEMLSAG00000001583-684349
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592769655|gb|GAXK01184913.1| (TSA: Calanus finmarchicus comp3182409_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 4.463e-8
Identity = 38/134 (28.36%), Postives = 66/134 (49.25%), Query Frame = 0
Query:  114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTH--ACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLW 245
            IGI      P +   +  +   + ++GM+  + I Y+QY +F  +F  +H  AC   AL S    LS   A   +L+  Q+I+I ID  MQNA ++ A++  +L  P    A+     Q   T+I ++  + ++
Sbjct:   38 IGIGLAGIFPSIKGFMQWIRRPVLVVGMLLYIGIYYYQYKNFLDIFSTSHLAACASLALGS--AFLSCITAFFCNLNTRQIISIVIDCTMQNATLSYAVVAGSLKEPEVQYASSPANAQVLFTSIPIMVTWFMY 433          
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592796059|gb|GAXK01158509.1| (TSA: Calanus finmarchicus comp66148_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 3.985e-5
Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = 0
Query:  114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYL 251
            IG++ +  LPK++  ++ +   L +  +I  L    +      RL D   A + FAL  +G       A         +I I ++T +QN  +A  ML   L  P+ D+AA+  +    LT   LL+A V +NL   L
Sbjct:  965 IGVSIRKCLPKVADFMVKIMKPLALFLIIFILVCGIWSQFFMIRLIDWKIAAVGFALPWLGFAFGCLFAKLCRRERKDIIAIAVETGIQNTGMAIFMLWFTLDHPAGDLAAVVPVAVATLTPFPLLAALVYYNLKNRL 1378          
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592867734|gb|GAXK01089828.1| (TSA: Calanus finmarchicus comp6614115_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 1.287e-4
Identity = 27/116 (23.28%), Postives = 57/116 (49.14%), Query Frame = 0
Query:  114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMG 229
            IG+  K+  PK ++ +  +    ++L ++    +  +  + FF L+   H     +L  +G ++S  +A+       QVI I ++T +QN+  A  ++   L SP  D+  ++ +G
Sbjct:  185 IGVAVKYKWPKRAESLNKISRPFYLLTLVILPSLGLYVNLHFFYLYTWRHLVSGASLGFLGFIVSAALAALLQQGKQQVIAISLETALQNSGFAAVVINTTLTSPYSDMGLLAPLG 532          
BLAST of EMLSAG00000001583 vs. C. finmarchicus
Match: gi|592754339|gb|GAXK01200074.1| (TSA: Calanus finmarchicus comp854871_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 2.478e-3
Identity = 33/120 (27.50%), Postives = 54/120 (45.00%), Query Frame = 0
Query:  114 IGITFKHFLPKLSKLILSVYSY-LFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFF 232
            IG+  +   P L++ I + +   L++L ++  +       I FF L    H     +L   G  L    A    +  +QVI + I+T +QN  IA  +L    PSP  D+A +  +  FF
Sbjct:  367 IGLWIRRVRPALAETIRTKFGRPLWLLCLLAIVIGGVVMNIFFFYLVTWRHLLAGASLGFFGYTLGGGAALLARMERSQVIAVAIETAIQNGGIAVVVLNLTFPSPYSDMALLPILAFFF 726          
BLAST of EMLSAG00000001583 vs. L. salmonis peptides
Match: EMLSAP00000001583 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:93338:94821:-1 gene:EMLSAG00000001583 transcript:EMLSAT00000001583 description:"maker-LSalAtl2s1274-snap-gene-0.30")

HSP 1 Score: 536.184 bits (1380), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ 263
            MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ
Sbjct:    1 MTFLLVLIITFFIKNGESQFLDHYTKTILERTHCSFDPLDGIYVDISSKDAKKYSSMTIYCKDESYSLELRSLNIRGAVEFCLLEKKVPINCSTQWLRFTSENMYHLIVSSNEIGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTKFQLPKYLKQ 263          
BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Match: EFX76606.1 (hypothetical protein DAPPUDRAFT_248773 [Daphnia pulex])

HSP 1 Score: 52.7582 bits (125), Expect = 4.551e-7
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0
Query:  156 FRLFDVTHACIIFALSSIGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLHRYLKTK 254
            F L D T      A++  G V     A    L   Q+I + ++T MQNANIA  +L   LP+P  D+AA+  + Q  +TT IL   + +   +R +K +
Sbjct:  362 FILLDWTLLTAGLAVTVAGFVFGAFFAWITRLGRPQIIAVSLETAMQNANIAFVLLKTTLPTPYSDIAALPAIAQILMTTSILFIFFGIIMAYRCVKNR 460          
BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Match: gb|KFM58135.1| (Sodium/bile acid cotransporter 5, partial [Stegodyphus mimosarum])

HSP 1 Score: 50.8322 bits (120), Expect = 9.533e-7
Identity = 38/141 (26.95%), Postives = 74/141 (52.48%), Query Frame = 0
Query:  114 IGITFKHFLPKLSKLILSVYSYLFILGMITTLFILYFQYISFFRLFDVTHACIIFALSS---IGLVLSMTIASTFSLSLAQVITIGIDTCMQNANIAGAMLTKNLPSPSRDVAAISYMGQFFLTTIILLSAYVLWNLH-RY 250
            +G+ F+ +LP+++K    + + + I  MI  LFI+ F   +   +F +    I+ A ++   +G +    I+ T  L L  ++ + ++T +QN  IA  +L  +L  P  D+AA+  +    +T + LL AY++  +  RY
Sbjct:   65 VGLAFQKWLPRVAKFCRRILAPVSI-AMI--LFIIIFGTYANLYMFKLFTWTILIAAAANVWLGFLFGTLISKTCDLRLEDIVAVAVETGVQNTGIAIVLLGFSLEQPEADLAAVIPVAASIMTPLPLLCAYLVLKIRSRY 202          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001583 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001583 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592769655|gb|GAXK01184913.1|4.463e-828.36TSA: Calanus finmarchicus comp3182409_c0_seq1 tran... [more]
gi|592796059|gb|GAXK01158509.1|3.985e-528.26TSA: Calanus finmarchicus comp66148_c0_seq1 transc... [more]
gi|592867734|gb|GAXK01089828.1|1.287e-423.28TSA: Calanus finmarchicus comp6614115_c0_seq1 tran... [more]
gi|592754339|gb|GAXK01200074.1|2.478e-327.50TSA: Calanus finmarchicus comp854871_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001583 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015830.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9333... [more]
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BLAST of EMLSAG00000001583 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001583 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX76606.14.551e-733.33hypothetical protein DAPPUDRAFT_248773 [Daphnia pu... [more]
gb|KFM58135.1|9.533e-726.95Sodium/bile acid cotransporter 5, partial [Stegody... [more]
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BLAST of EMLSAG00000001583 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001583 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1274supercontigLSalAtl2s1274:93338..94821 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1274-snap-gene-0.30
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001583 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001583EMLSAT00000001583-697430Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1274:93338..94821-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001583-684349 ID=EMLSAG00000001583-684349|Name=EMLSAG00000001583|organism=Lepeophtheirus salmonis|type=gene|length=1484bp|location=Sequence derived from alignment at LSalAtl2s1274:93338..94821- (Lepeophtheirus salmonis)
ATGACTTTCCTCCTCGTTCTTATCATCACATTTTTTATTAAAAATGGAGA AAGTCAATTTTTAGATCACTATACAAAAACAATCCTTGAGAGAACACATT GCTCTTTTGATCCTTTAGATGGAATCTATGTAGATATTAGCTCAAAAGAC GCAAAAAAGTATTCATCGATGACGATATACTGTAAGGATGAAAGCTATTC TTTAGAGCTACGTTCTCTAAATATAAGAGGAGCTGTGGAGTTCTGCTTGC TTGAGAAGAAAGTACCTATCAATTGTTCAACCCAATGGCTGAGATTTACT TCAGAAAACATGTATCATCTCATTGTGAGTAGTAATGAAATTGGTGTGCA TTGTATAACATTGCGAAGATATAATGCCAGCAATGAATCCTACAATGAGG ATATCTTATTATACAGATTATATACAAAAATGAATTTTGACTTTGACAAA GTGGTTATTCAATCCTTGAATTATATAAACTTATTAGCCGTTTCTCTAAT CAATTTTATTTTCGGCCTCTCATTGAAATTGGATAGAATGCATTATTCTA TTAGAGCATTCTTATTGAACATAGCTTCATGTGAAGCCAGGAAAATAAGA AGCATAATGTCCCCTGGACCCATAAAAATTGGATTGTTTTGTCAATTAAT AATTATGCCAACTCTTGCCTTTATTCTTGGATTCATTTTTAAAACGGATA ATATATGCATTGAAAATGAAATTTTATTTAGACTCGGGCTCTTTGTACTC GGAACAAGCCCAGGAAGTTTATCATCAAATTGGTTTTCAAAGCTCTTTGA TGGAGATGTAGAACTTTCCCTAACTCTGACNNNNNNAATTGGWTTTCAAA GCTCTTTGATGGAGATGTAGAACTTTCCCTAACTCTGACGATATTTTCCA ACATTTTTTACCCTTTAAACACTCTTATCTGGTGGAATCTTTTAGGTCGT TTTATAATTCCAAATTTTAAGACAAATTTACCAACWCAGGAAATAATTTT GTTTTTATTTATTGACATATTTTCTATTTTGGCAGGGATCACATTCAAAC ACTTTCTACCCAAGTTATCAAAGTTAATATTAAGCGTGTATTCCTACTTA TTTATTCTTGGAATGATTACAACTCTTTTCATTCTCTATTTTCAATACAT AAGCTTTTTCCGTTTGTTTGATGTAACTCATGCATGTATCATTTTTGCTT TATCCTCCATTGGTCTCGTTTTGAGCATGACAATAGCATCAACCTTCTCT TTATCATTGGCACAAGTCATTACAATTGGTATAGATACTTGTATGCAAAA TGCAAATATAGCTGGTGCAATGTTGACAAAAAACTTACCAAGTCCATCAA GGGATGTGGCCGCAATTTCGTATATGGGTCAATTTTTTTTAACGACAATT ATTCTACTCTCTGCGTACGTTTTGTGGAACTTGCATAGATATTTGAAGAC CAAGTTCCAGTTACCTAAATACTTGAAACAATAG
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