EMLSAG00000001595, EMLSAG00000001595-684361 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001595
Unique NameEMLSAG00000001595-684361
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001595 vs. C. finmarchicus
Match: gi|592917518|gb|GAXK01040857.1| (TSA: Calanus finmarchicus comp3256045_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.176e-1
Identity = 19/57 (33.33%), Postives = 30/57 (52.63%), Query Frame = 0 
Query:    1 MEQSEYRRAIQDLSNTNAVEYISYNNSLKLLFMDINDVKGELASLNERLPSLATLTQ 57
            M ++EY +AIQ    +NA  Y   N ++ +L   +  ++G   SLN     LAT+ Q
Sbjct:  265 MNKTEYEKAIQYPVTSNAPVYFLSNAAIPVLLRRVKTMRGSCFSLNTE--ELATVEQ 429
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BLAST of EMLSAG00000001595 vs. C. finmarchicus
Match: gi|592905777|gb|GAXK01052598.1| (TSA: Calanus finmarchicus comp5133336_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 8.508e+0
Identity = 21/59 (35.59%), Postives = 31/59 (52.54%), Query Frame = 0 
Query:   18 AVEYISYNNSLKLLFMDIN---DVKGELASLNERLPSLATLTQQLQKEIENIGQERKEE 73
            A++ I  +NS+K  F  I    D K E+    ++L  +  LT  LQK IEN+  E  +E
Sbjct:  281 AIKMIELSNSVKNSFAKIEKKIDEKFEMYE--KKLDDVIKLTDNLQKSIENVNTENDDE 451
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BLAST of EMLSAG00000001595 vs. L. salmonis peptides
Match: EMLSAP00000001595 (pep:novel supercontig:LSalAtl2s:LSalAtl2s127:230131:235128:-1 gene:EMLSAG00000001595 transcript:EMLSAT00000001595 description:"maker-LSalAtl2s127-snap-gene-2.14")

HSP 1 Score: 221.476 bits (563), Expect = 1.579e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 MEQSEYRRAIQDLSNTNAVEYISYNNSLKLLFMDINDVKGELASLNERLPSLATLTQQLQKEIENIGQERKEELSKIRGREDQLIERIKQLENGDEDIRMRISQHKKCSKI 111
            MEQSEYRRAIQDLSNTNAVEYISYNNSLKLLFMDINDVKGELASLNERLPSLATLTQQLQKEIENIGQERKEELSKIRGREDQLIERIKQLENGDEDIRMRISQHKKCSKI
Sbjct:    1 MEQSEYRRAIQDLSNTNAVEYISYNNSLKLLFMDINDVKGELASLNERLPSLATLTQQLQKEIENIGQERKEELSKIRGREDQLIERIKQLENGDEDIRMRISQHKKCSKI 111
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001595 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001595 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592917518|gb|GAXK01040857.1|4.176e-133.33TSA: Calanus finmarchicus comp3256045_c0_seq1 tran... [more]
gi|592905777|gb|GAXK01052598.1|8.508e+035.59TSA: Calanus finmarchicus comp5133336_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001595 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015951.579e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s127:23013... [more]
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BLAST of EMLSAG00000001595 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001595 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001595 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001595 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s127supercontigLSalAtl2s127:230131..235128 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s127-snap-gene-2.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001595 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001595EMLSAT00000001595-697442Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s127:230131..235128-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001595-684361 ID=EMLSAG00000001595-684361|Name=EMLSAG00000001595|organism=Lepeophtheirus salmonis|type=gene|length=4998bp|location=Sequence derived from alignment at LSalAtl2s127:230131..235128- (Lepeophtheirus salmonis)
ATACAAACGATTCGTATGGAACAAAGTGAATATCGTAGGGCGATACAAGA
CTTGAGTAACACGAACGCAGTAGAGTACATCTCATATAACAACTCTTTAA
AGTTACTCTTCATGGATATCAATGATGTCAAAGGGGAATTGGCATCTTTA
AATGAGAGACTCCCAAGTTTAGCTACATTGACTCAACAGTTACAGAAAGA
AATTGAAAACATTGGTCAAGAGAGGAAAGAAGAGTTGAGTAAAATTCGTG
GAAGGGAAGATCAACTTATTGAACGGATAAAACAATTGGAGAATGGGGAT
GAGGATATTCGAATGAGGATCTCTCAACACAAAAAGGTACTTTTTTTAAT
AACATTTTTGCATACTTTGCCAAAAAGATAAATTGTCAATTTTTTCCTTT
GTTAATAACTTGACAGCCTGTCAAGCACAAACACCTCTCATCTCTTTTAT
TTATTCTTCCAAATTTAATTTCTTCAACATTCTTGAGCTTTCAAATACTT
TTTTCCACCATCAATGCTTATGAATTTAATTGCTTGACTGTTTTGATTTA
TTTATAAATACTATGGGTGATGAGTAGAGTCGGGMTTAGAGGGAGGCATT
GCTGGACACTTTCTCCCACTTACACGWAAAAAGTACTGTCCCCCCCCCCC
CCTTTGTTTATTTAGAAAAAAAAATCGTAATTAAATTCAAATTAAAAAAA
ATGAAAGACATAACCCGTAACATTTATCTTTGACATAGTATCCCTTCCCT
GAGCATGTGCTTACTTAAAAACAGGGTTGGGTAATGTTTGATAGTTGAGC
AATACGTTACATGGGCTGAAAAGTCAGCTACTTCAACCATAGAGGGGGCT
ATTTTTTTAATTCACCGTATTTTCAGTTAGTACCAACGTTTAAAAGACAG
ATGTCAAAATTTCATGAGAATCTCTTCTTTAGTTTATGAGTTATTGTGTG
ATATCTGTAACAACTTTTGTTATTTCCAAAACTAGTGATCTAAAACAGTT
TTGTGTTTTAATTTTAAACTGCTTCAGATGATAAAAAATACAGCTCAAGC
TATGTAGTGGCATGAAAATTGTTATGGACTCCACTTCATAAAGCAAATAA
AAATAAATGCCAATTTAGAACGAAAAAAAATAACTCACGTGTTTTCTTTG
TTAAGCCTGTGACTTTCAGCCCATGGTTTATTACTCTGCGAAAAAGTAAT
TTAATTATATTTATCAGTTATGTGTCGTGAGTCCAATTCGGCTCGATGGG
MTACTCAATAAGTCTTACAAAATCCAATACTGAAACTCTAAAAAACTTAT
TACCCATCACTGCTTGTATTATTGGAGGTTTCGAGAGATTAAACGAAAGA
AGTATAGTTTGATAGTTAAATGCAATTTTTTACATGTGAGAGGGTCTTAA
TTCCTCATTAGTTCGTAGGGTATTATACGGGTACTTTTGATACGGAACGC
CTGGCTCTGATTAGTATTTATACAGTCCTAACCTTCAAAAACTAAATAGA
TTTTTTCAAATTATTGCTTATTATTGTTCCTGGATCCTCTGAATAAAACT
AATATTTTTTTTTCTCGATTCATCATTGTATAAAAATGGATTGTTTTCGA
AAAAGTATGTATCGTGTACACGCTTCATTACTGAAACTTTATTTCTTATG
CTTTCTTGCATAGCTTCAATCAGAGGTTGAGTTCATTTGACTTTCGTCTT
CTGATCGGACGAATGTATTTATGAATAAATTTAGTTATGGTAGACTCCAT
GTAATATTCAGTTATTACGTACGTACTAATTATAAATCTCTCAGGTGGGA
ACATGACTCTACCCCCCGACCAACAAAAACCCGTCATTTTACCTCCTGGT
ATTTCATCCATTATTATTGAGTAGTTCAGGTTTAAAATGATAGAAGGGCA
AAGTAATAAATGAATGTTATTATGAGTTTCTATAATTCATCAATATTTTA
ATTCAAGCATAAAAATATGTTTGAATTAAAATAGATACTTAGCTTGAATG
TTTCCCCATTGGCATTACCTATAAGATGGAATAAATATTAATAATAATCC
CCTAAATATTGGATGTACACATTATGCAACGTGACTTATGGTATAGAAGG
AAAAATGAGAAATGAAATAAAAAAATAAAAGAATTGAATCCTTGAGCCTT
TGAGAATCACTTTTCTGTAGAGCCTTACTCAAATATACGTTGCGGAACAA
TCAAATTGCTCTTCACTCCGTCTTCACCACTTAATTATCTGAAATAAGTT
AATTTATGAGCTTTCAGAGGCTCCTGTAGGATTAAATATATATTTTTTAT
GTTGGGGGAGGGGGAGGCTTAATTTTTGGAGTTTTTTTGGAAAAAAAATT
TATAAATTAAATTTTTAGGGAAAAATTTCAGAAATCCACATCTATTTAGA
AAAAAGTATTTTTTTTTAAATTAAAAAACCCAGAGTTGTTCAACAAAAAT
AATTTTTTTTTGGCAAAAAAATTTAAAAATCTTGAACTATTAACCAAAAA
TGAAATTACTAAAGTTAAATTTCAAATATAAAATTTTAAGGAAAAAAATT
TCAAATATTACATTTTTTAAGAAAATTTTTAAACATCCTTAGTTATTTTA
TATAATAATTTTTTTGGAAAAAATTTTAAAATTCTAGATCTTTTCACAAA
AAATAAATTTTTTTTGGAAAAGTATAGCTAAAATTAAATTTCAAATATAA
AATATTTTTTGGGAAAAAATTTCAAATATTAAATATTTCATAGAAAAATT
TCAAAAATAATTGGTTATCCTCAAAAAATTATTTCTTTTTCAACAATCCA
TACCCATTAAGAAATTTTTTTTTTTTTTTAATTTAAAAATCCAAATGTAT
TTATAGACAGTTAAATTTTTTTTTTAAATTTGTTAAATTTCAAATGGTGA
TTTTTTTTTTTTTTTAAATATTAGATTTTCAATTCGGAATAAAAATTTTC
TAATTTTTTTTTTTTTTGGGGGGGGGGGGGCTACAACCCCTTCAGCTTCT
CCTTGCAGACCCCCCTGGCTCACCTCAACCTTTTGGTTGCTCTCACAATA
GCCTATATTCTGGATTTTACAGTTGCCTCTACATGGACGTGCCTTTCTTT
CCTCAAGTATCAGGCTTGTTAATTTACTAGGAGTGCTTTTTCTATTAGCC
ATTCAATTATTATTTTTATTAATAAATATTTCGTTAAAATCTGTATTTCA
TTTATAACATTATGGTAAATGTAGTGTAAAATCAACAAAGTTCAAGGAAA
TGCTTGTAAACATGTAAGGTAGCAACTTTTTGAGGCCTCAATCTGATTGA
ATTCAGATTTTGTTTAACCAGTGTACCTTTGGCAATAATTGACCATTGTA
TCTTAAATTACACAATTATTGTTATACTATTAATTATTTTAATAACAAAT
AAATAAATAATATAAATCATAAATATACAATTGAAAACTCCTCTTTCAAG
AGGTGCCAAATGATGACGTAGAGAGAAGTCTGATGGATTACTAATACTTA
CGTTATTAAGTTAAATTAATAATTACGCTTGTATGGTTGTTAAAAGATTG
AATGTTTGGTCGTATGGTTACTATTTATTGTATTACGGGATAAAATGCTG
GTGGAGTAGATGCCTTGGGGGGTAAATTGCCAGGGGATACAATGACGGGG
AGMCGCCATCAGGGGTTAGGAATCCTAGAACAGCACATTTATATATTTAG
GGGATTTCTTAAAAATCAAACTTTAGATGACCCTGAATTTGATGAAATTA
CTATAAATGATCTTTAGAAAGGAAGTCCTTTAAAAATTTGTTGGCTCCTG
TATATACATACAATTTTTGAAAGAACCTTTAATGGGTATATTGTATAAGT
TTTTCCGTACGCCATTCTTTGTCTTTTTATTATAAAATGGGAGACTATAA
AAGTGGAAAGACATTTCGACATTTTCTTGAAATTTTCATGAAATTGGATG
AAAGGTCTCATTATTTGGTAGTTGAGAAGTGAAACATCAACTAATCATTC
AACATATCAAAGACCATGATTTTTTTTAAACATGATACACTGAGCCAGGG
AATTATAGATACTTGGAATAAAAACGGTATTTTTCCATTCCCAAATGAGT
CATTTTTTTCTTTTGTTAAATAGAATAATGTATAAGACGAAAATAATACA
CAAAAATATTGTGGTTAACTTTTTTTTAAATGTCAAACTACAAATTTCTG
CAAAAATGGGTCTTCCTCATATTTTTTTATTACAAATTTTAATTGACTGT
TTTCGAAAATTTTAAATTATTTTTAAAATTACAAATTAAAAACTCATTAC
TTATCACGGATATCATGTAATATGCTTGTTTACAAGGAACTATCATCGAA
AAATGTATCTAAATATACAAATTATGTAAGAGGGAATGTAAGTGTAAAGC
CTATATATACAAAGAAGAATCTTTGACTCAAGTGGGAAGCAAAATGGCGT
TGATAAACACGGAGCGTTACACAATTTTCTTTCTGCAGGCAGTTCCAAAA
TATTAAAGCCTAATCAAAAATTAGGTCTCAACAGACATGTAAACATACTT
TTTCATTAATGTAGATACACATAACATTATTATGGGTGTTTTAACTTATA
TATAATATGTCACAAAATCAATTAATAAATTGTATCAAAACATTATTAAA
AACTATGCAACTTTTTTTATCGAACATCCATATCCAATTTCAATCATAAT
TTAATTATACTTATTCATTGCTTGGTTACAACGTGTACAATCTATTTGTA
CAATTTACAACTTCCACAAAATCGCAAATTGTACACGAATTATATAAGTA
TATATTTTAATTACAATATTATATAATTTAAACAGGAGATATTTGAAGAA
TTGAATCAAAGTAAGAGCTTTATCCAAAAAGATCTGGAGTCCTCCCTCCT
ACACAATATTACATCTAGGCTCGAAAACTTTGAGAAAATGGTTGAACAAA
GAGTAAGTATTGTATTATATTTATATATAATAGTGCTCAAAAATCTAA
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