EMLSAG00000001608, EMLSAG00000001608-684374 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001608
Unique NameEMLSAG00000001608-684374
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001608 vs. C. finmarchicus
Match: gi|592784501|gb|GAXK01170067.1| (TSA: Calanus finmarchicus comp1290_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 126.716 bits (317), Expect = 1.072e-32
Identity = 68/143 (47.55%), Postives = 89/143 (62.24%), Query Frame = 0
Query:    1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVL-PRLLVCPDDSMSE---KEKQTIQWVILQST 139
            ML  PGDLIPVQ +A  IPWTRR+SQIL++LHRG VTF T VYDTNVGDIS+L+TYFNP+R +  +LN +F   P S    AS                    QK  + +V+ PRLL+ PD +++    K ++T+ WV+ Q T
Sbjct:   48 MLERPGDLIPVQPNATSIPWTRRRSQILNFLHRGPVTFSTLVYDTNVGDISALATYFNPDRISERELNLRFGHYPTSGEKHASP-------------------QKAGTEAVVKPRLLLYPDHNLNSSQVKVQRTLNWVLSQDT 419          
BLAST of EMLSAG00000001608 vs. C. finmarchicus
Match: gi|592825257|gb|GAXK01129932.1| (TSA: Calanus finmarchicus comp71901_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.059e+0
Identity = 18/64 (28.12%), Postives = 32/64 (50.00%), Query Frame = 0
Query:    4 HPGDLIPVQEDAIQIPWTRRKSQILSYLH----RGSVTFETFVYDTNV-GDISSLSTYFNPERW 62
             P +L+P  ++ +QIP  R + ++   LH    RGS    TF + TN+   ++ + +   P R 
Sbjct:  913 RPPELLPGLQELVQIPQ*REQ*RVADALHQKTCRGSSALRTFKFSTNL*SQVTGVLSRLEPGRL 1104          
BLAST of EMLSAG00000001608 vs. L. salmonis peptides
Match: EMLSAP00000001608 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1280:108689:110607:1 gene:EMLSAG00000001608 transcript:EMLSAT00000001608 description:"maker-LSalAtl2s1280-snap-gene-0.12")

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query:    1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265
            MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV
Sbjct:    1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265          
BLAST of EMLSAG00000001608 vs. nr
Match: gi|155966300|gb|ABU41103.1| (hypothetical protein, partial [Lepeophtheirus salmonis])

HSP 1 Score: 197.593 bits (501), Expect = 2.287e-61
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query:  166 LPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265
            LPW GISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV
Sbjct:    1 LPWDGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 100          
BLAST of EMLSAG00000001608 vs. nr
Match: gi|961376358|gb|ALS04923.1| (hypothetical protein [Pseudodiaptomus poplesia])

HSP 1 Score: 125.946 bits (315), Expect = 3.158e-31
Identity = 64/138 (46.38%), Postives = 85/138 (61.59%), Query Frame = 0
Query:    1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPD---DSMSEKEKQTIQWVI 135
            MLV PGDLIPV  DA QIPWTRRKSQIL+YL RG++ F T VYDT VGDIS +S+Y+NPER ++ +LN KFA+T D+                   T     ++    S  LP +L+ PD   D    +E++T++WV+
Sbjct:    1 MLVSPGDLIPVTSDATQIPWTRRKSQILNYLRRGAIDFSTLVYDTKVGDISPVSSYYNPERISIKELNTKFAKTSDT-------------------TEPMDSIRIGGESVALPWILIYPDHNLDKAKVREERTLRWVM 119          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001608 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001608 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592784501|gb|GAXK01170067.1|1.072e-3247.55TSA: Calanus finmarchicus comp1290_c0_seq1 transcr... [more]
gi|592825257|gb|GAXK01129932.1|1.059e+028.13TSA: Calanus finmarchicus comp71901_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001608 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000016080.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1280:1086... [more]
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BLAST of EMLSAG00000001608 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001608 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001608 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|155966300|gb|ABU41103.1|2.287e-6199.00hypothetical protein, partial [Lepeophtheirus salm... [more]
gi|961376358|gb|ALS04923.1|3.158e-3146.38hypothetical protein [Pseudodiaptomus poplesia][more]
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BLAST of EMLSAG00000001608 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1280supercontigLSalAtl2s1280:108689..110607 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1280-snap-gene-0.12
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein, partial [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001608 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001608EMLSAT00000001608-697455Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1280:108689..110607+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001608-684374 ID=EMLSAG00000001608-684374|Name=EMLSAG00000001608|organism=Lepeophtheirus salmonis|type=gene|length=1919bp|location=Sequence derived from alignment at LSalAtl2s1280:108689..110607+ (Lepeophtheirus salmonis)
GTCGTATCACTATAAATATATTTGAATAACAAATATCGTTTCAACGTGTT AATATGTTTGTAACGTATATTAAAGTTCTTTTTATTTATCAGTCAGTTAT TTTTCAGTTGTTGCCATAATGTTGGTTCACCCTGGCGATTTAATTCCTGT TCAAGAAGACGCTATTCAAATTCCATGGACAAGGAGGAAGTCTCAAATTC TTAGTTATCTGCATAGGGGATCTGTAACTTTTGAAGTACTATTTGAGAAT TTAAATTATTTGTTCATTTTTCATTATAACTTTTCGNAATAGACTTTCGT ATACGATACAAATGTTGGAGATATATCTTCTTTGTCAACTTATTTTAACC CTGAAAGATGGACTGTAGATGATTTGAACCATAAATTTGCTCAAACTCCG GATAGTGATAACGCTTTTGCTAGTGCTGTTGCAGACGGTGGCAACAATTG TAATCCTGACCTCACTAGGTAAATATTTATATCATTTTTTAAATTTCTCT CATCTCTTTTTAGTAAGTTCACAGAATTGCAAAAGAATGCCAGCTCGTCC GTGCTTCCTAGGTTATTAGTTTGTCCAGATGATTCAATGTCTGAAAAAGA GAAACAAACCATACAGTGGGTCATACTGCAAAGTACAGTTAAGACTATGA AGAATGGTCATTCTGAAAATCGTACACAGGCTGTTATCACTCCAGAGTCG CCTGATGGGGKGTTTTTGCCATGGGRTGGCATTTCATCTAGTAAAAAATG TTCACCTTTAGGGTATTCTAAATATTCTTCCAATGTGTGGCGACCGTCAG ATACTGGTATTCTCTCTCCCTTTCTTTGGGACAAAAGCTTCTTAGATTCG TGGCCTAGTGGCTCTACCTTATTATCTTCTAGTTCTAATCATAGTAGTAG TCCAGACAATTTAACAAAAGTTAATCACGTTATAAAAACAAAAGAAGACT TTTTACTTGGGGAATCTTTGTTGGAGAATATAGCTTCTGATTTTATTAGA AACGAGACTTTAGTTTAATTGATTATAAAAATTTTAGACTACATTGTTAA TTTAATCAATGTATTATTTGAATATTTACGGGTTATAAGGATTCTATTTT TTGTACGTAATATATGTAAATTAATGTTTCGTATGAGCAAGTTCATGATA AATTTACACGGAAAAAAAAATAACAATCTTTGATTTGGCATATTAACTAA TTTTTTTTTTAAACTTACTAAGTACCGAGTAATGATTCATGCGTGGTTTA TTGCTTAGGTTATCTAAAAATAATTTGAAATAATTAAGAAACTCTTTATT TTTTCGATAATTAAGAAACTCCTATTTTTTCGAACTGCAATGAGGGATTA CCCTCCAAAAACATGTTATAGTTTTATATAGTTTTATGTTGATAAGTCTT TAAATCATAATTTGACAAATATATTTCATAAGAAATTGTTGTTTGACTAC TCAATATAAGCATAATTACAGGGTCGTAATATACAGTTAAAAGAAAGTAC AAAAAAAGGTTAAACCTTAAAAATAATTNAAAAATCAGTCTGATAAATGT TTTATATTTTATTTGTTTTTGAGTTACAGATATGAGTAATCTCATTCAAA CAAAGACTTGTTTTTTAGGCAAATTAAAGTTTGTTCATTTTAATTTGGTG TAAATTTATGATTTAATAAGGTTAATTTTAATTATTTGATTTTATATAAT AAAGTTTAGGATGTCATCCATCATTAAACTATCTAGTTTCTTATAAATTA ATTAACTGCCTTTGATATAATTTTTTTTTTTAAAATATAGTATATAATTA TGTACTGAGACATTTTTAAATTAATAAATTCTTTATTTTTAGTGTCTTTG AGTTTGTGAACTTTTAAAAAGATTCTTTTTGTAATTTGTGTAAATATATA CATTAACATATATACTTTT
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