EMLSAG00000001608, EMLSAG00000001608-684374 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001608 vs. C. finmarchicus
Match: gi|592784501|gb|GAXK01170067.1| (TSA: Calanus finmarchicus comp1290_c0_seq1 transcribed RNA sequence) HSP 1 Score: 126.716 bits (317), Expect = 1.072e-32 Identity = 68/143 (47.55%), Postives = 89/143 (62.24%), Query Frame = 0 Query: 1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVL-PRLLVCPDDSMSE---KEKQTIQWVILQST 139 ML PGDLIPVQ +A IPWTRR+SQIL++LHRG VTF T VYDTNVGDIS+L+TYFNP+R + +LN +F P S AS QK + +V+ PRLL+ PD +++ K ++T+ WV+ Q T Sbjct: 48 MLERPGDLIPVQPNATSIPWTRRRSQILNFLHRGPVTFSTLVYDTNVGDISALATYFNPDRISERELNLRFGHYPTSGEKHASP-------------------QKAGTEAVVKPRLLLYPDHNLNSSQVKVQRTLNWVLSQDT 419
BLAST of EMLSAG00000001608 vs. C. finmarchicus
Match: gi|592825257|gb|GAXK01129932.1| (TSA: Calanus finmarchicus comp71901_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.059e+0 Identity = 18/64 (28.12%), Postives = 32/64 (50.00%), Query Frame = 0 Query: 4 HPGDLIPVQEDAIQIPWTRRKSQILSYLH----RGSVTFETFVYDTNV-GDISSLSTYFNPERW 62 P +L+P ++ +QIP R + ++ LH RGS TF + TN+ ++ + + P R Sbjct: 913 RPPELLPGLQELVQIPQ*REQ*RVADALHQKTCRGSSALRTFKFSTNL*SQVTGVLSRLEPGRL 1104
BLAST of EMLSAG00000001608 vs. L. salmonis peptides
Match: EMLSAP00000001608 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1280:108689:110607:1 gene:EMLSAG00000001608 transcript:EMLSAT00000001608 description:"maker-LSalAtl2s1280-snap-gene-0.12") HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0 Query: 1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV Sbjct: 1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPDDSMSEKEKQTIQWVILQSTVKTMKNGHSENRTQAVITPESPDGXFLPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265
BLAST of EMLSAG00000001608 vs. nr
Match: gi|155966300|gb|ABU41103.1| (hypothetical protein, partial [Lepeophtheirus salmonis]) HSP 1 Score: 197.593 bits (501), Expect = 2.287e-61 Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 Query: 166 LPWXGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 265 LPW GISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV Sbjct: 1 LPWDGISSSKKCSPLGYSKYSSNVWRPSDTGILSPFLWDKSFLDSWPSGSTLLSSSSNHSSSPDNLTKVNHVIKTKEDFLLGESLLENIASDFIRNETLV 100
BLAST of EMLSAG00000001608 vs. nr
Match: gi|961376358|gb|ALS04923.1| (hypothetical protein [Pseudodiaptomus poplesia]) HSP 1 Score: 125.946 bits (315), Expect = 3.158e-31 Identity = 64/138 (46.38%), Postives = 85/138 (61.59%), Query Frame = 0 Query: 1 MLVHPGDLIPVQEDAIQIPWTRRKSQILSYLHRGSVTFETFVYDTNVGDISSLSTYFNPERWTVDDLNHKFAQTPDSDNAFASAVADGGNNCNPDLTSKFTELQKNASSSVLPRLLVCPD---DSMSEKEKQTIQWVI 135 MLV PGDLIPV DA QIPWTRRKSQIL+YL RG++ F T VYDT VGDIS +S+Y+NPER ++ +LN KFA+T D+ T ++ S LP +L+ PD D +E++T++WV+ Sbjct: 1 MLVSPGDLIPVTSDATQIPWTRRKSQILNYLRRGAIDFSTLVYDTKVGDISPVSSYYNPERISIKELNTKFAKTSDT-------------------TEPMDSIRIGGESVALPWILIYPDHNLDKAKVREERTLRWVM 119 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001608 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001608 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000001608 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001608 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001608 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001608 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000001608 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1280:108689..110607+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001608-684374 ID=EMLSAG00000001608-684374|Name=EMLSAG00000001608|organism=Lepeophtheirus salmonis|type=gene|length=1919bp|location=Sequence derived from alignment at LSalAtl2s1280:108689..110607+ (Lepeophtheirus salmonis)back to top Add to Basket
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