EMLSAG00000001620, EMLSAG00000001620-684386 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001620
Unique NameEMLSAG00000001620-684386
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001620 vs. C. finmarchicus
Match: gi|592811562|gb|GAXK01143006.1| (TSA: Calanus finmarchicus comp5782490_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.177e+0
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   74 AFYNGSHSDITKDLNFLTKEVAKLGYEEISC 104
            + +NGS SD  K L  + K++A++  EEI C
Sbjct:  538 SHHNGSKSDREKKLIEIVKDLAQMQKEEIEC 630
[Close]
BLAST of EMLSAG00000001620 vs. L. salmonis peptides
Match: EMLSAP00000001620 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1285:31502:32585:-1 gene:EMLSAG00000001620 transcript:EMLSAT00000001620 description:"maker-LSalAtl2s1285-augustus-gene-0.6")

HSP 1 Score: 257.299 bits (656), Expect = 4.269e-89
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 MHELQGESYFDDAKWDSLFDLKKKLDETELVDGFNVLMRKCSEKIIIFKISNNNDKGPQVLSCLLIKKDLQYGAFYNGSHSDITKDLNFLTKEVAKLGYEEISCGADNHASNRRAIKQDLCQGEF 125
            MHELQGESYFDDAKWDSLFDLKKKLDETELVDGFNVLMRKCSEKIIIFKISNNNDKGPQVLSCLLIKKDLQYGAFYNGSHSDITKDLNFLTKEVAKLGYEEISCGADNHASNRRAIKQDLCQGEF
Sbjct:    1 MHELQGESYFDDAKWDSLFDLKKKLDETELVDGFNVLMRKCSEKIIIFKISNNNDKGPQVLSCLLIKKDLQYGAFYNGSHSDITKDLNFLTKEVAKLGYEEISCGADNHASNRRAIKQDLCQGEF 125
[Close]
BLAST of EMLSAG00000001620 vs. L. salmonis peptides
Match: EMLSAP00000008719 (pep:novel supercontig:LSalAtl2s:LSalAtl2s541:217743:219488:-1 gene:EMLSAG00000008719 transcript:EMLSAT00000008719 description:"maker-LSalAtl2s541-snap-gene-2.5")

HSP 1 Score: 98.2117 bits (243), Expect = 1.628e-25
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   21 LKKKLDETELVDGFNVLMRKCSEKIIIFKISNNNDKGPQVLSCLLIKKDLQYGAFYNG 78
            L  K++ETELVDG NVLMRKCSE+I IF +SNNND+GPQ+LSCLLIKK+LQY AFYNG
Sbjct:   25 LTLKINETELVDGLNVLMRKCSEEIFIFLMSNNNDEGPQILSCLLIKKNLQYEAFYNG 82
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001620 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001620 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592811562|gb|GAXK01143006.1|9.177e+041.94TSA: Calanus finmarchicus comp5782490_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000001620 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000016204.269e-89100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1285:3150... [more]
EMLSAP000000087191.628e-2577.59pep:novel supercontig:LSalAtl2s:LSalAtl2s541:21774... [more]
back to top
BLAST of EMLSAG00000001620 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001620 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001620 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001620 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1285supercontigLSalAtl2s1285:31502..32585 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1285-augustus-gene-0.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001620 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001620EMLSAT00000001620-697467Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1285:31502..32585-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001620-684386 ID=EMLSAG00000001620-684386|Name=EMLSAG00000001620|organism=Lepeophtheirus salmonis|type=gene|length=1084bp|location=Sequence derived from alignment at LSalAtl2s1285:31502..32585- (Lepeophtheirus salmonis)
AATGAAACTCTTCAACTCATGCATGAGCTTCAGGGGGAGAGTTATTTTGA
TGATGCCAAATGGGACTCCCTTTTTGACCTTAAAAAGAAATTAGGTGAGA
TCCATTTTAATGAAAAAAGTGTTTGGTATGCTATTTTTATGTTAATTATA
GATGAGACAGAACTTGTCGATGGATTTAACGTTCTGATGAGAAAATGCTC
AGAAAAAATCATCATATTCAAGATCTCCAACAATAATGATAAAGGGCCAC
AAGTCTTGAGTTGCTTACTTATTAAGAAAGACTTGCAATATGGAGCTTTT
TATAATGGTGTAAAGATCTCTTACTCTCTCTCTTGAAGTGTTACATCACC
AGCCCTAATTTTACAAAAGTAAATTCCATTAATGATGTCAGGGAGTTAAT
TATTTTCCTCAAAAGAAAAAGGAAAAATATATATATATCTCAACCAAAAT
GATTTGATGGCATCTGCTCAAATTTTGCTGGAGAAGGCTGATATTTGCAG
CATGGTAATTATTGAGAAGAAAAAAGTAAACTTCGCATGTGAACAAATCC
TTTACGCTTTATCTAAAAAAACAGTACACATCAAGGACATGATCTATTGT
AACTTCCTTTAAAACTACAAGTTCTGCTGCGTATAGATTTCTTCAAAAGG
AAAATTTGTTGACGTTACCACGTCCTAATCACATCAGTAAAACGACAAAA
CAAMGGATGTTTCTACAGGTTTCACGGAAGTTACAAGAGCTTKCCTATCC
AAAAGAATTGACTCTATCTAGTAGAGAAAAAATGTGTATGCTCATAACGG
ATGAAGTTTATACTGCAATACTGCAAAGCAAGTACAATTTCACAAAATGA
CAAAGTGACAATACCTGTAGTGTGTTCATGCTTTTTTTAGTGTTTGTTGA
TCATATGAGGATACAATTCAAATAAAACTATCTCATGCAGAGTCATTCTG
ATATTACCAAAGATTTGAACTTTTTAACTAAAGAAGTCGCCAAATTGGGA
TATGAAGAGATCAGTTGTGGAGCAGACAATCACGCTTCGAATAGACGGGC
TATTAAGCAAGACTTGTGCCAAGGAGAGTTCTAA
back to top
Add to Basket