EMLSAG00000001755, EMLSAG00000001755-684521 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001755
Unique NameEMLSAG00000001755-684521
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001755 vs. C. finmarchicus
Match: gi|592876073|gb|GAXK01081504.1| (TSA: Calanus finmarchicus comp322499_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 68.1662 bits (165), Expect = 4.866e-12
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 0 
Query:   78 IRFGPKLWGALDV-HGLKSVSQTSCKLVSFTEFGLRHVNVFLIMCLVAYAYYSMTMDKEYLDQKLKK-GFPWLIMSCFVVEGATGMIPAIYSDVSPRYVSCDFIMSENTSL 186
            I+FGP L  +L   H     SQT CK++ +TE+G RHV   L+  LV+Y YY +    + +  ++   G  W+++    ++G  GM+PA+Y D+S    SC +  S   +L
Sbjct:  448 IQFGPMLSSSLHSGHNYYYYSQTGCKMLFYTEYGTRHVVTALVCGLVSYGYYGLHHGFDSVSGRMGTLGMGWILLGLAAIQGLFGMVPAMYVDLSLDGQSCSWTYSMQLTL 780
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BLAST of EMLSAG00000001755 vs. C. finmarchicus
Match: gi|592820536|gb|GAXK01134032.1| (TSA: Calanus finmarchicus comp1946267_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 9.955e+0
Identity = 17/67 (25.37%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:  233 KGW------------SVTEDSTIVCITDGIFRVTTEIWHVIFFLVIIYGDPQL----SESAPQCHQH 283
            KGW            ++  +S I+C+T GIFR    + ++ FFL  I     +    S +   C++ 
Sbjct:  130 KGWR*RICFICKRIKTLRSNSCIICVTTGIFRT*NSVQYIFFFLTKILNSLNIFVSSSSAIISCNKK 330
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BLAST of EMLSAG00000001755 vs. L. salmonis peptides
Match: EMLSAP00000001755 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12:1630345:1631847:-1 gene:EMLSAG00000001755 transcript:EMLSAT00000001755 description:"maker-LSalAtl2s12-augustus-gene-16.4")

HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0 
Query:    1 MNETLENNFLQDDLILEENTVNTRYDPCHNYENSIIILIILLVSISGFIFYFVLLFTRRYYISGYDIIYGLITFFTLIRFGPKLWGALDVHGLKSVSQTSCKLVSFTEFGLRHVNVFLIMCLVAYAYYSMTMDKEYLDQKLKKGFPWLIMSCFVVEGATGMIPAIYSDVSPRYVSCDFIMSENTSLEWFLFGQMLFAAILPDIIPFLLLIYPLYKLGNLPRALHTVIMLPILKGWSVTEDSTIVCITDGIFRVTTEIWHVIFFLVIIYGDPQLSESAPQCHQHISPLLQSWYRRLW 296
            MNETLENNFLQDDLILEENTVNTRYDPCHNYENSIIILIILLVSISGFIFYFVLLFTRRYYISGYDIIYGLITFFTLIRFGPKLWGALDVHGLKSVSQTSCKLVSFTEFGLRHVNVFLIMCLVAYAYYSMTMDKEYLDQKLKKGFPWLIMSCFVVEGATGMIPAIYSDVSPRYVSCDFIMSENTSLEWFLFGQMLFAAILPDIIPFLLLIYPLYKLGNLPRALHTVIMLPILKGWSVTEDSTIVCITDGIFRVTTEIWHVIFFLVIIYGDPQLSESAPQCHQHISPLLQSWYRRLW
Sbjct:    1 MNETLENNFLQDDLILEENTVNTRYDPCHNYENSIIILIILLVSISGFIFYFVLLFTRRYYISGYDIIYGLITFFTLIRFGPKLWGALDVHGLKSVSQTSCKLVSFTEFGLRHVNVFLIMCLVAYAYYSMTMDKEYLDQKLKKGFPWLIMSCFVVEGATGMIPAIYSDVSPRYVSCDFIMSENTSLEWFLFGQMLFAAILPDIIPFLLLIYPLYKLGNLPRALHTVIMLPILKGWSVTEDSTIVCITDGIFRVTTEIWHVIFFLVIIYGDPQLSESAPQCHQHISPLLQSWYRRLW 296
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001755 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001755 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592876073|gb|GAXK01081504.1|4.866e-1234.23TSA: Calanus finmarchicus comp322499_c2_seq1 trans... [more]
gi|592820536|gb|GAXK01134032.1|9.955e+025.37TSA: Calanus finmarchicus comp1946267_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001755 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000017550.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s12:163034... [more]
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BLAST of EMLSAG00000001755 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001755 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001755 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001755 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s12supercontigLSalAtl2s12:1630345..1631847 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s12-augustus-gene-16.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001755 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001755EMLSAT00000001755-697602Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s12:1630345..1631847-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001755-684521 ID=EMLSAG00000001755-684521|Name=EMLSAG00000001755|organism=Lepeophtheirus salmonis|type=gene|length=1503bp|location=Sequence derived from alignment at LSalAtl2s12:1630345..1631847- (Lepeophtheirus salmonis)
ATGAACGAAACATTGGAGAACAATTTTTTACAAGATGATCTCATTCTAGA
AGAAAACACAGTCAATACCCGCTATGATCCTTGCCATAATTACGAAAACT
CCATCATCATACTTATCATTCTTCTTGTGTCCATCTCTGGATTCATATTT
TACTTTGTCCTTCTTTTTACGAGGTAGCATTGTTTTATTGATTAATACTC
ATTCAATTCCACTCTCAACATCTTCTAAGGCGTTACTACATATCCGGATA
TGATATAATTTATGGACTCATAACATTTTTTACTCTTATTCGATTCGGTC
CCAAGTTATGGGGAGCATTGGATGTTCATGGACTTAAATCCGTTTCGCAA
ACTAGTTGTAAGCTTGTTTCCTTTACTGAATTCGGACTTCGACACGTTAA
TGTATTTTTGATCATGTGCCTCGTGGCCTATGCATACTACTCCATGACGA
TGGATAAGGAATATTTGGATCAAAAGGTAAGTAAGGAATGAGTGTTAAAG
TATAAATTTACAAAATATCAATTTTTGTTTCTTTATATATATGTTTTTAC
TTATTACTAGCTGAAGAAAGGCTTTCCATGGCTAATTATGTCCTGCTTCG
TTGTAGAGGGGGCAACAGGGATGATCCCTGCGATTTACTCTGATGTTTCA
CCAAGATATGTATCATGTGATTTCATAATGAGTGAGAACACATCTCTAGA
ATGGTTTCTCTTTGGTCAAATGCTGTTTGCCGCCATTCTTCCAGACATTA
TCCCCTTCCTTCTCCTGATTTACCCCCTCTATAAATTGGGAAAGTCATTG
AAACAAATAGAAGACAAAACTGTTAGAGCCTCCATTCGTAATGTCCTCAT
TATAACTTGGACACACATATTCTTATGGTAAATATTGAAACCCTTTCAAC
AGCGGAAGTGGGGATTTGGACTCGAAACTTTCGACTCAAATAGGACTCGA
GTCCAGATTTTTAAGACTTGCAATCTGACTTGATCACAGAATCAAAGACT
CAAGGCTTGAATTGAATCCAAAAGCTAAGACTCACAAGTTTTTGACTGTC
GTTTCAATTTTTTCACTGGGTATAAATTACTCTTTAAAGTATTTTTTATT
TTCTGAGGACTTGAAGTGGACTCGATCAAAATACACAAGGACTTGGACTT
AACTCATCGACAAAGACTAGAGACTTAACTTGGACTTGCAGTATTATAAG
GACATCTCCCTATCTCTCTGTTCAAAAGTAATGAATGGTTTATGAATAAT
AATTTATTTTGTTAGTCTTCCTCGAGCCTTACACACCGTCATCATGCTTC
CCATTCTCAAGGGTTGGTCCGTCACTGAAGATTCCACCATCGTATGTATA
ACAGATGGTATTTTTCGAGTCACTACAGAGATATGGCACGTCATATTCTT
CCTTGTGATCATTTACGGGGATCCTCAGTTGAGTGAAAGTGCACCACAAT
GCCATCAACACATTTCCCCTCTTCTACAAAGTTGGTATAGACGTCTATGG
TAA
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