EMLSAG00000001766, EMLSAG00000001766-684532 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592934897|gb|GAXK01023656.1| (TSA: Calanus finmarchicus comp115043_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.416e-1 Identity = 24/82 (29.27%), Postives = 34/82 (41.46%), Query Frame = 0
Query: 48 EKYHTKCLKAKLISGEIERVCAD-DNSCSREGKK--AAYESVYCCDEDNCNT-----------GSTHYPSCLLLLPWMTIGF 115
+ YH L+ ++ D D+ + E KK Y+SVY DED N GS P LL++ W+ GF
Sbjct: 2329 QAYHPLPTDEALLPSNNDKKSFDYDSIFTFETKKDKMKYKSVYKFDEDRKNNLEADYYDFVSGGSDKTPVILLMMSWILTGF 2574
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592831575|gb|GAXK01125969.1| (TSA: Calanus finmarchicus comp311756_c2_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 2.680e+0 Identity = 25/91 (27.47%), Postives = 40/91 (43.96%), Query Frame = 0
Query: 29 CLYCKSCSRIVEETFTITCEKYHTK-CLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCN--TGSTHYPSCLLLLPWMTIGFI 116
C C +C + C++ + C K L +GE+ R+CA + C + CC ED CN + S+ +P LL W + F+
Sbjct: 114 CFICYNCLNYEAASQAKQCDEPDEQFCWKELLETGEVNRLCASQDKCD---SAISNPHTSCCPEDKCNSSSQSSSWP----LLGWGVVFFL 365
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592831574|gb|GAXK01125970.1| (TSA: Calanus finmarchicus comp311756_c2_seq2 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 2.915e+0 Identity = 25/89 (28.09%), Postives = 38/89 (42.70%), Query Frame = 0
Query: 29 CLYCKSCSRIVEETFTITCEKYHTK-CLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCLLLLPWMTIGFI 116
C C +C + C++ + C K L +GE+ R+CA + C + CC ED CN+ S S LL W + F+
Sbjct: 114 CFICYNCLNYEAASQAKQCDEPDEQFCWKELLETGEVNRLCASQDKCD---SAISNPHTSCCPEDKCNSSSQS--SSWPLLGWGVVFFL 365
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592894563|gb|GAXK01063812.1| (TSA: Calanus finmarchicus comp2599716_c0_seq4 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 3.614e+0 Identity = 17/54 (31.48%), Postives = 25/54 (46.30%), Query Frame = 0
Query: 52 TKCLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCL 105
TK LK +I+ + ++C SC K + Y S D+ +T H SCL
Sbjct: 1246 TKTLKITIITAAMSKLCL--RSCHSSTKVSIYASQLVTAGDDFSTNKIHVKSCL 1401
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592816284|gb|GAXK01138284.1| (TSA: Calanus finmarchicus comp102554_c0_seq8 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 4.402e+0 Identity = 31/119 (26.05%), Postives = 49/119 (41.18%), Query Frame = 0
Query: 23 SGEGIDCLYCKSCSRI-VEETFTITCEKYHTK--------CLKAKLISG----EIERVCAD---------DNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCLLLLPWMTIGFINIQ 119
SGE IDC C S + + T K H C+K G +I+R C D +++C EG + + C+ED CN G SCL L+ +++ + ++
Sbjct: 133 SGETIDCFDCNSWDDPRCHDPWNWTYPKSHMPPTSPCEGCCVKMVQFIGTHHYQIKRTCTDSFEVNFFMVNHACMTEGHRHGHMCF--CEEDECN-GVERISSCLHLISFLSFMIMGVR 480
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Match: gi|592894565|gb|GAXK01063810.1| (TSA: Calanus finmarchicus comp2599716_c0_seq2 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 5.754e+0 Identity = 17/54 (31.48%), Postives = 25/54 (46.30%), Query Frame = 0
Query: 52 TKCLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCL 105
TK LK +I+ + ++C SC K + Y S D+ +T H SCL
Sbjct: 1246 TKTLKITIITAAMSKLCL--RSCHSSTKVSIYASQLVTAGDDFSTNKIHVKSCL 1401
BLAST of EMLSAG00000001766 vs. L. salmonis peptides
Match: EMLSAP00000001766 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12:40989:78550:1 gene:EMLSAG00000001766 transcript:EMLSAT00000001766 description:"maker-LSalAtl2s12-augustus-gene-0.9") HSP 1 Score: 253.447 bits (646), Expect = 1.193e-87 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MESLISIRYYLLTLILLLSLGNSGEGIDCLYCKSCSRIVEETFTITCEKYHTKCLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCLLLLPWMTIGFINIQLNRLLW 125
MESLISIRYYLLTLILLLSLGNSGEGIDCLYCKSCSRIVEETFTITCEKYHTKCLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCLLLLPWMTIGFINIQLNRLLW
Sbjct: 1 MESLISIRYYLLTLILLLSLGNSGEGIDCLYCKSCSRIVEETFTITCEKYHTKCLKAKLISGEIERVCADDNSCSREGKKAAYESVYCCDEDNCNTGSTHYPSCLLLLPWMTIGFINIQLNRLLW 125
BLAST of EMLSAG00000001766 vs. nr
Match: gi|1022768864|gb|KZS13482.1| (Uncharacterized protein APZ42_021380 [Daphnia magna]) HSP 1 Score: 64.3142 bits (155), Expect = 6.522e-11 Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0
Query: 9 YYLLTLILLLSLGNSGEGIDCLYCKSCSRIVEETFTITCEKYHTKCLKAKLISGEIERVCADDNSC-SREGKKAAYESVYCCDEDNCNTGS--THYPSCLLLLPWMTIGF 115
+ L+ L+++ + S + C+ CK CS+ E++ +TC +CLK L SG I R C D+ +C + + + +V+CC+ + CN GS T SCL LLP + F
Sbjct: 6 WMLVVLVMVFPIATSA--LRCVNCKGCSKF-EDSQAVTCPSSADRCLKLHLPSGLINRECGDEKTCVDKSNDRDRFLAVHCCETNICNGGSRWTSSGSCLALLPLLATSF 112 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001766 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001766 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000001766 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001766 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001766 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001766 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000001766 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s12:40989..78550+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001766-684532 ID=EMLSAG00000001766-684532|Name=EMLSAG00000001766|organism=Lepeophtheirus salmonis|type=gene|length=37562bp|location=Sequence derived from alignment at LSalAtl2s12:40989..78550+ (Lepeophtheirus salmonis)back to top Add to Basket
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