EMLSAG00000001852, EMLSAG00000001852-684618 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001852
Unique NameEMLSAG00000001852-684618
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001852 vs. C. finmarchicus
Match: gi|592776852|gb|GAXK01177716.1| (TSA: Calanus finmarchicus comp6487158_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.846e+0
Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 0 
Query:   27 PELVNKDYILFKCEEPRIRXCGYHLLTSL 55
            P+LVN D +LF   EPR   C  + + SL
Sbjct:  224 PQLVNGDGVLFTETEPRPNFCSTYTVWSL 310
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BLAST of EMLSAG00000001852 vs. L. salmonis peptides
Match: EMLSAP00000001852 (pep:novel supercontig:LSalAtl2s:LSalAtl2s131:594396:595267:1 gene:EMLSAG00000001852 transcript:EMLSAT00000001852 description:"maker-LSalAtl2s131-augustus-gene-6.11")

HSP 1 Score: 129.413 bits (324), Expect = 1.391e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MSFYHRIFRXLYHXXPKDRXVLXEPVPELVNKDYILFKCEEPRIRXCGYHLLTSLGLFRLFCSFNPIYNY 70
            MSFYHRIFRXLYHXXPKDRXVLXEPVPELVNKDYILFKCEEPRIRXCGYHLLTSLGLFRLFCSFNPIYNY
Sbjct:    1 MSFYHRIFRXLYHXXPKDRXVLXEPVPELVNKDYILFKCEEPRIRXCGYHLLTSLGLFRLFCSFNPIYNY 70
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001852 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001852 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592776852|gb|GAXK01177716.1|1.846e+044.83TSA: Calanus finmarchicus comp6487158_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001852 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018521.391e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s131:59439... [more]
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BLAST of EMLSAG00000001852 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001852 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001852 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001852 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s131supercontigLSalAtl2s131:594396..595267 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s131-augustus-gene-6.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001852 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001852EMLSAT00000001852-697699Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s131:594396..595267+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001852-684618 ID=EMLSAG00000001852-684618|Name=EMLSAG00000001852|organism=Lepeophtheirus salmonis|type=gene|length=872bp|location=Sequence derived from alignment at LSalAtl2s131:594396..595267+ (Lepeophtheirus salmonis)
ATCCTTTCAATCATAACAAGCAATTAACATTGATCGAATGATCTCATTAT
AGAAGTAGAATGTCTTTTTACCACCGAATATTTCGKCSCCTCTATCATWA
CAAKCCKAAGGATAGACWTGTWCTTMCSGAGCCAGTACCTGAACTCGTGA
ACAAAGACTATATTCTCTTTAAATGCGAAGAGCCTCGAATTCGTNATTGT
GGCTACCATTTGCTTACCTCTTTGGGGCTATTTAGGCTATTTTGCTCTTT
CAATCCCATCTACAATTATTGAACCCTACGCAAAGCAATTTAAGAAAGGA
GACAAGAATTCTTGGGTTATAGACACAGTGGCAAGTGCAAGTCAGGGCGT
TGGTATTGCTTTTGGGGGATTTGGAATTGGGTTGACGACCTACTGGTTTC
TCAGAACGGGAAGAACAATTCGGCGTGTTGTACTAAGAAAAGGTGGAAAA
TATGTTACTCTTGTCACGTATGGACTCCTGGGCATTGGATCTAAATACTC
AACTGTACCCATTACACATGTAATTACTATTATATTTAGAGAGTCTTCTT
ATAAATTTTTAATTTAATTTCAGTGTAGCACGGTTAAAAAAACGTTTCTT
CGGGATACCAAAATATTTTTAAACCTCAAGGATCATTATTTGAAATTTCA
ATTAAATATAGAGCAGGGTTTTTTTGTAAATAAGCCACTATTCGATCGCA
CTGTTGGAATAAGTCGCAAAGTCTAAAGATTCTTTTTTGTATTTTATTAG
TTTATTTAATTTCTTAATTAATCAGAAATATACATTCTGTCGTTATTATG
TACTACATATTCATCTTCTATTAATTTACCATTGTTTATTATATTTAGAA
GCATGCTTTTGTAGAAATCTAT
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