EMLSAG00000001854, EMLSAG00000001854-684620 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001854
Unique NameEMLSAG00000001854-684620
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592834855|gb|GAXK01122689.1| (TSA: Calanus finmarchicus comp1209127_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 5.439e-7
Identity = 43/160 (26.88%), Postives = 67/160 (41.88%), Query Frame = 0
Query:   29 KFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIA-IRPFLAGQRPFTPGKKEPEQETEEAVSDGKIV-----ESDGTISPXXXXXXXXXASTLVQSNR-----RGS--SSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSE 175
            KFAP +C  LKFNC   +   H CC++PLP  ++ +VP    P  A ++    G++     K  P     E+            E+   +            + +V   R     R S    R +P      K  +C+   INC+ N +H+CC+ Q N+E
Sbjct: 1127 KFAPRFCLKLKFNCNLRAR--HPCCQYPLPPVEDTKVPTTAIPRGAKLKSLKIGKKTVPTSKSIPVNSLRESSEKSLRTQLSEHEAHAELKKDHVNEENLVKNKIVLKPRNEKPPRSSLFKLRRRPVFGGGRKSPVCR--IINCRRNKNHKCCQEQENTE 1594          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592771680|gb|GAXK01182888.1| (TSA: Calanus finmarchicus comp288629_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 52.7582 bits (125), Expect = 5.940e-7
Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = 0
Query:   29 KFAPSYCRTLKFNCQ-RESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRP----FTP---------GKKEP------------EQETE-EAVSDGKIVESDGTISPXXXXXXXXXASTLVQSNRRGSSS---RNKPNINKSSKPRICQRITINCQENPDHRCCE 169
            K+AP +C  LKFNC+ R+SH+   CCK+PLP  D  E P  P P    +P     RP     TP          +K P            ++E E   V D    +++ +  P         A     +  R S S   R +P  + S+K  +C+   INC+ N  H+CC+
Sbjct:  690 KYAPRFCLKLKFNCKLRKSHA---CCKYPLPPRD--ENPALPSPTAFPKPVKLQVRPTRIQITPVSDTEGKSNKRKSPFRRPLRNQQNKIDKENEVRTVEDNGANKANASTQPKRKAPLRNNAQRPAYNPVRKSPSLTKRRRPAYSSSNKSPVCR--IINCKRNKKHKCCQ 1181          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592834856|gb|GAXK01122688.1| (TSA: Calanus finmarchicus comp1209127_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 52.7582 bits (125), Expect = 7.945e-7
Identity = 43/160 (26.88%), Postives = 67/160 (41.88%), Query Frame = 0
Query:   29 KFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIA-IRPFLAGQRPFTPGKKEPEQETEEAVSDGKIV-----ESDGTISPXXXXXXXXXASTLVQSNR-----RGS--SSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSE 175
            KFAP +C  LKFNC   +   H CC++PLP  ++ +VP    P  A ++    G++     K  P     E+            E+   +            + +V   R     R S    R +P      K  +C+   INC+ N +H+CC+ Q N+E
Sbjct: 1154 KFAPRFCLKLKFNCNLRAR--HPCCQYPLPPVEDTKVPTTAIPRGAKLKSLKIGKKTVPTSKSIPVNSLRESSEKSLRTQLSEHEAHAELKKDHVNEENLVKNKIVLKPRNEKPPRSSLFKLRRRPVFGGGRKSPVCR--IINCRRNKNHKCCQEQENTE 1621          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592771681|gb|GAXK01182887.1| (TSA: Calanus finmarchicus comp288629_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 2.926e-6
Identity = 53/174 (30.46%), Postives = 73/174 (41.95%), Query Frame = 0
Query:   29 KFAPSYCRTLKFNCQ-RESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRP----FTP-----GK--------------------KEPEQETEEAVSDGKIVESDGTISPXXXXXXXXXASTLVQSNRRGSSS---RNKPNINKSSKPRICQRITINCQENPDHRCCE 169
            K+AP +C  LKFNC+ R+SH+   CCK+PLP  D  E P  P P    +P     RP     TP     GK                    KE E  T E +   K   ++ +  P         A     +  R S S   R +P  + S+K  +C+   INC+ N  H+CC+
Sbjct:  690 KYAPRFCLKLKFNCKLRKSHA---CCKYPLPPRD--ENPALPSPTAFPKPVKLQVRPTRIQITPVSDTEGKSNKRKSPFRRPLRNQQNKIDKENEVGTVEDIDANK---ANASTEPKRKPILRNNAQRPAYNPVRKSPSLTKRRRPAYSSSNKSPVCR--IINCKRNKKHKCCQ 1181          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592798595|gb|GAXK01155973.1| (TSA: Calanus finmarchicus comp6658735_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.980e+0
Identity = 15/43 (34.88%), Postives = 26/43 (60.47%), Query Frame = 0
Query:    9 LFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHI 51
            +FL+ C++ LN   + G+K +    YCRT+  +C+RE +   I
Sbjct:   27 IFLL-CVVLLNTMVLNGSKGQTGERYCRTI--SCEREFNERRI 146          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592844853|gb|GAXK01112691.1| (TSA: Calanus finmarchicus comp197246_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.470e+0
Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 0
Query:    8 CLF---LMTCLITLNKESVQGTKRKFAPSYCRTLK 39
            CL+   + TCL++ N+E+V GT  + A SYC  ++
Sbjct: 1013 CLYASTVWTCLVSRNEETVLGTFAELASSYCSEIQ 1117          
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592945707|gb|GAXK01012846.1| (TSA: Calanus finmarchicus comp2991342_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 8.751e+0
Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 0
Query:  146 SSKPRIC------QRITINCQENPDHRCCENQNNS 174
            S  PR C      QRI +  + +PDH+CC + N +
Sbjct:   41 SGHPRYCFWWWWRQRIWLEMEHSPDHQCCHHMNQN 145          
BLAST of EMLSAG00000001854 vs. L. salmonis peptides
Match: EMLSAP00000001854 (pep:novel supercontig:LSalAtl2s:LSalAtl2s131:603665:606771:-1 gene:EMLSAG00000001854 transcript:EMLSAT00000001854 description:"maker-LSalAtl2s131-snap-gene-6.14")

HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV 309
            MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV
Sbjct:    1 MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV 309          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001854 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001854 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592834855|gb|GAXK01122689.1|5.439e-726.88TSA: Calanus finmarchicus comp1209127_c0_seq2 tran... [more]
gi|592771680|gb|GAXK01182888.1|5.940e-729.82TSA: Calanus finmarchicus comp288629_c0_seq2 trans... [more]
gi|592834856|gb|GAXK01122688.1|7.945e-726.88TSA: Calanus finmarchicus comp1209127_c0_seq1 tran... [more]
gi|592771681|gb|GAXK01182887.1|2.926e-630.46TSA: Calanus finmarchicus comp288629_c0_seq1 trans... [more]
gi|592798595|gb|GAXK01155973.1|3.980e+034.88TSA: Calanus finmarchicus comp6658735_c0_seq1 tran... [more]
gi|592844853|gb|GAXK01112691.1|4.470e+040.00TSA: Calanus finmarchicus comp197246_c0_seq1 trans... [more]
gi|592945707|gb|GAXK01012846.1|8.751e+037.14TSA: Calanus finmarchicus comp2991342_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001854 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018540.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s131:60366... [more]
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BLAST of EMLSAG00000001854 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001854 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001854 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001854 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s131supercontigLSalAtl2s131:603665..606771 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s131-snap-gene-6.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001854 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001854EMLSAT00000001854-697701Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s131:603665..606771-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001854-684620 ID=EMLSAG00000001854-684620|Name=EMLSAG00000001854|organism=Lepeophtheirus salmonis|type=gene|length=3107bp|location=Sequence derived from alignment at LSalAtl2s131:603665..606771- (Lepeophtheirus salmonis)
ATGGATAGGTAATTATGCGCTAAGTACCTCATACCTTAAATAAAATACGT CCTTGGATTTTTTTGCAATGAAGTAATATTTTATGTATTTAAAAAAATTG GCAATGAAGACAGATGATGACGAATTTGTCTCCATTCCGACTGAATGAAT TTATATGTTGATAAATAAAATATACGCTGAGCTCTGAAGTAAGTAGCCGG GGCTTGTATTGCTCAAAATGGATCTACAAACCAAACAACACCATAAGGAA CCACAACATTTTAAAGATGGTTTAAGGTAAGAGGGGGAGAGTGAGGGGGC ATGCGTGCGATGAAAGAACAAAACGAGGTTCCATGGAGTCCATCATCATA CGTATCCTACACCATCGTTTCGAGAGTTTTTTCTACTTCTTATATTATGT ACTATTTTACCGTAATTGGGGTTATATGTTCCTCCGTACATCTCTCTACC TATATCTTGCTTACTATCCATACATATATATAATATGAAGTACCATTGTC TAGCTAGGATTATTTAAAAGTATCTTGTCGGAAAGTGAAAATTAACGCAG ACCATTATATCTGTGTTCTATAGTATAGTAGTAGGCTTTGAAGCATTGAG AAAGGAACCATTAGATAACATTGGTACACAATATACCTAACATTTGTTAC ATCTTTAAAATGAGAGGGTAAGAACGAGCTATATTCTTTTTTGTTATTGG TTCAGAGTGGGAAAATATTCGAAAGCTCTTGTAAATTTTGAAGAAAAAAA AGAAAAGAATTATCTTTGATTATTTTTTTAAATCAATAAAATTCTGCCAA TATATATTCATTGATATTATATATTATGAATATCATTTCTTTACACAAAA TATTGGATATCACATATCCTATATTTATTGGGATGAACAACCGTCCTTTT TTTTTACATCCTGTCCGGGGGCCTTTTTATCAATTTCCTTGAAATGTTTA GCGTTAGAGTGAGGCAAACAGTTGAATATTCTATGCTCACTTTAAAAAAT AAAATATATAAATAAAGAAAGACCAAAAGTTAAAATCAAAATAACAAGAT CCAAATTTTTTTTTTTTTAAAGAAGAATCTAAATTGAGTGAGATTATATT CTTAAATTTTTTTAAATGATCAAACCACTTGTTCTCTATATTGGAAAAAC AAAAAAGGTGGATTTTATATACCAAATATTTGATCTTTCAATTAGTATAC ATATTTATTATGGAACGACGTAGCTCAATGGATAATTTGCTCGCGAGAAA TTATTCTCTTGAACTCAATGTGTGTAGCTTTGCGCTCCGGTCGTTCCTAG AGAAAGAAATATACATATATATGGATTTCAAAGAAGATCCCTAGTTCAAA TGGAGTGGTTGTAATACTAAAATGTTTACTAATACATTATCTGTGCAACT CAGGGCCAATTGAAGGAACACATATATATATATATAATATTTTCCTTCGA ATGATTTGAATCAATAAATTTACCTAATAAATTTATATGGGCTCTTCACT ATTAAGTATAAAACTAATGAGTAAAGACTATCTCCATTACCTTTTACGAC TGAGGAATAAATTCATCAATTAGTTAGGTTTTATATAACTGAAAGTGCAT TTGGGGATTAGCTGGTGTATTATGGCTATTTTATTATATATAAGTGTATA TTTTGATAATAAAAATTGAATTCATGGCTCCATAAAATGAGNCATGAACT GAACATCAATTTTGTCTATTTTTTTTTATTGATGTTATATAACAATGTAA AATGTACAAGATTTGTACAAAATGTACCTATACAATTGATTCAAGGTTTT TGTCTGTTCATTCAATGATGTCCCTTATACGATGATTTAATTATTTTTTA GCTTTGTTTCATTATGCCTGTTTTTGATGACTTGCTTAATAACATTGAAT AAGGAATCAGTACAAGGAACTAAACGGAAGTTTGCTCCATCATATTGTCG CACATTAAAATTCAATTGTCAAAGGGAATCACATTCAGATCATATCTGTT GTAAATTCCCACTTCCAGAGGGGGATGAGGTAGAAGTCCCTGACAGKCCT CGACCTCTTATCGCTATCCGKCCCTTCTTGGCAGGCCAGCGTCCATTTAC TCCGGGAAAGAAAGAACCCGAACAGGAAACTGAAGAAGCTGTCTCTGATG GTAAAATTGTCGAATCTGATGGAACAATATCCCCGACGACAACAACAACT ACTACAACCACGGCATCTACATTAGTTCAATCTAATCGAAGAGGGTCCTC TTCTAGAAATAAACCGAATATAAACAAAAGTTCAAAGCCTCGCATTTGCC AGAGGATAACTATCAATTGTCAAGAAAATCCGGACCATCGGTGTTGTGAA AATCAAAATAACTCGGAGGAAGCKCCTKCCCCTACTGTCACAACCACGAC GACGACTACTACAACAACGCAGGCACCAACGGACTACAGTGACGGTGTGT TGACTCCTAATAGTTAATTCATTTTGGTCTAATATATATATATTTTTTTT CAACTTTTAGAGTATGAATACAAAGAAGGCAGCGATTACGAATCATACGG AGATCCGCAACAAAGAATACCTGCAGAATGTTTTACAGCTAAACTTGACT GTGCTAACGATCCTAGTCATCCGTGCTGTGCCTTTTAAAAGCAATATTAT TTAATATTTAATCCTTATTTGTACTATCTACTATTGTTCAAATTGTAATA ATTCAAATAATAGAAATAAATAAAGAAAATACAATTCGTATGTCGAAATG AATCTTCCTTCTTTTCCTAATCGCATTTATTCTATATAAAAAAAATTAAG AGGAAAACGTCATTAAATGATAATAATAATATAAAATAATATATTTAATG TGGCAAAAAAAAAAAATCATTACTCGCTATCAGATTTGGATCTTGATCGA GATCTAGATGCAGATTTCGATTTAGACCGGGATCTTGAGCGTGACACTGA TCTTGATACTGAACGAGGTACAGATTTGTTTGAGGATCCTGATGAATTCC TTGATCGATTTGATTCTTCATCTGAATCCCGAAGAGCACTTTTAGCACTC TCCAACTTCTTTGTTTTGGAGATATCGATGTCACTATCGTCTTCGTCAGA TGTGTAA
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