EMLSAG00000001854, EMLSAG00000001854-684620 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592834855|gb|GAXK01122689.1| (TSA: Calanus finmarchicus comp1209127_c0_seq2 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 5.439e-7 Identity = 43/160 (26.88%), Postives = 67/160 (41.88%), Query Frame = 0 Query: 29 KFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIA-IRPFLAGQRPFTPGKKEPEQETEEAVSDGKIV-----ESDGTISPXXXXXXXXXASTLVQSNR-----RGS--SSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSE 175 KFAP +C LKFNC + H CC++PLP ++ +VP P A ++ G++ K P E+ E+ + + +V R R S R +P K +C+ INC+ N +H+CC+ Q N+E Sbjct: 1127 KFAPRFCLKLKFNCNLRAR--HPCCQYPLPPVEDTKVPTTAIPRGAKLKSLKIGKKTVPTSKSIPVNSLRESSEKSLRTQLSEHEAHAELKKDHVNEENLVKNKIVLKPRNEKPPRSSLFKLRRRPVFGGGRKSPVCR--IINCRRNKNHKCCQEQENTE 1594
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592771680|gb|GAXK01182888.1| (TSA: Calanus finmarchicus comp288629_c0_seq2 transcribed RNA sequence) HSP 1 Score: 52.7582 bits (125), Expect = 5.940e-7 Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = 0 Query: 29 KFAPSYCRTLKFNCQ-RESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRP----FTP---------GKKEP------------EQETE-EAVSDGKIVESDGTISPXXXXXXXXXASTLVQSNRRGSSS---RNKPNINKSSKPRICQRITINCQENPDHRCCE 169 K+AP +C LKFNC+ R+SH+ CCK+PLP D E P P P +P RP TP +K P ++E E V D +++ + P A + R S S R +P + S+K +C+ INC+ N H+CC+ Sbjct: 690 KYAPRFCLKLKFNCKLRKSHA---CCKYPLPPRD--ENPALPSPTAFPKPVKLQVRPTRIQITPVSDTEGKSNKRKSPFRRPLRNQQNKIDKENEVRTVEDNGANKANASTQPKRKAPLRNNAQRPAYNPVRKSPSLTKRRRPAYSSSNKSPVCR--IINCKRNKKHKCCQ 1181
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592834856|gb|GAXK01122688.1| (TSA: Calanus finmarchicus comp1209127_c0_seq1 transcribed RNA sequence) HSP 1 Score: 52.7582 bits (125), Expect = 7.945e-7 Identity = 43/160 (26.88%), Postives = 67/160 (41.88%), Query Frame = 0 Query: 29 KFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIA-IRPFLAGQRPFTPGKKEPEQETEEAVSDGKIV-----ESDGTISPXXXXXXXXXASTLVQSNR-----RGS--SSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSE 175 KFAP +C LKFNC + H CC++PLP ++ +VP P A ++ G++ K P E+ E+ + + +V R R S R +P K +C+ INC+ N +H+CC+ Q N+E Sbjct: 1154 KFAPRFCLKLKFNCNLRAR--HPCCQYPLPPVEDTKVPTTAIPRGAKLKSLKIGKKTVPTSKSIPVNSLRESSEKSLRTQLSEHEAHAELKKDHVNEENLVKNKIVLKPRNEKPPRSSLFKLRRRPVFGGGRKSPVCR--IINCRRNKNHKCCQEQENTE 1621
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592771681|gb|GAXK01182887.1| (TSA: Calanus finmarchicus comp288629_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 2.926e-6 Identity = 53/174 (30.46%), Postives = 73/174 (41.95%), Query Frame = 0 Query: 29 KFAPSYCRTLKFNCQ-RESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRP----FTP-----GK--------------------KEPEQETEEAVSDGKIVESDGTISPXXXXXXXXXASTLVQSNRRGSSS---RNKPNINKSSKPRICQRITINCQENPDHRCCE 169 K+AP +C LKFNC+ R+SH+ CCK+PLP D E P P P +P RP TP GK KE E T E + K ++ + P A + R S S R +P + S+K +C+ INC+ N H+CC+ Sbjct: 690 KYAPRFCLKLKFNCKLRKSHA---CCKYPLPPRD--ENPALPSPTAFPKPVKLQVRPTRIQITPVSDTEGKSNKRKSPFRRPLRNQQNKIDKENEVGTVEDIDANK---ANASTEPKRKPILRNNAQRPAYNPVRKSPSLTKRRRPAYSSSNKSPVCR--IINCKRNKKHKCCQ 1181
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592798595|gb|GAXK01155973.1| (TSA: Calanus finmarchicus comp6658735_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 3.980e+0 Identity = 15/43 (34.88%), Postives = 26/43 (60.47%), Query Frame = 0 Query: 9 LFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHI 51 +FL+ C++ LN + G+K + YCRT+ +C+RE + I Sbjct: 27 IFLL-CVVLLNTMVLNGSKGQTGERYCRTI--SCEREFNERRI 146
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592844853|gb|GAXK01112691.1| (TSA: Calanus finmarchicus comp197246_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 4.470e+0 Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 0 Query: 8 CLF---LMTCLITLNKESVQGTKRKFAPSYCRTLK 39 CL+ + TCL++ N+E+V GT + A SYC ++ Sbjct: 1013 CLYASTVWTCLVSRNEETVLGTFAELASSYCSEIQ 1117
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Match: gi|592945707|gb|GAXK01012846.1| (TSA: Calanus finmarchicus comp2991342_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 8.751e+0 Identity = 13/35 (37.14%), Postives = 19/35 (54.29%), Query Frame = 0 Query: 146 SSKPRIC------QRITINCQENPDHRCCENQNNS 174 S PR C QRI + + +PDH+CC + N + Sbjct: 41 SGHPRYCFWWWWRQRIWLEMEHSPDHQCCHHMNQN 145
BLAST of EMLSAG00000001854 vs. L. salmonis peptides
Match: EMLSAP00000001854 (pep:novel supercontig:LSalAtl2s:LSalAtl2s131:603665:606771:-1 gene:EMLSAG00000001854 transcript:EMLSAT00000001854 description:"maker-LSalAtl2s131-snap-gene-6.14") HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0 Query: 1 MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV 309 MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV Sbjct: 1 MDSFVSLCLFLMTCLITLNKESVQGTKRKFAPSYCRTLKFNCQRESHSDHICCKFPLPEGDEVEVPDXPRPLIAIRPFLAGQRPFTPGKKEPEQETEEAVSDGKIVESDGTISPTTTTTTTTTASTLVQSNRRGSSSRNKPNINKSSKPRICQRITINCQENPDHRCCENQNNSEEAPXPTVTTTTTTTTTTQAPTDYSDEYEYKEGSDYESYGDPQQRIPAECFTAKLDCANDPNLDLDRDLDADFDLDRDLERDTDLDTERGTDLFEDPDEFLDRFDSSSESRRALLALSNFFVLEISMSLSSSSDV 309 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001854 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001854 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000001854 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001854 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001854 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001854 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001854 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s131:603665..606771- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001854-684620 ID=EMLSAG00000001854-684620|Name=EMLSAG00000001854|organism=Lepeophtheirus salmonis|type=gene|length=3107bp|location=Sequence derived from alignment at LSalAtl2s131:603665..606771- (Lepeophtheirus salmonis)back to top Add to Basket
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