EMLSAG00000001866, EMLSAG00000001866-684632 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001866
Unique NameEMLSAG00000001866-684632
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592774729|gb|GAXK01179839.1| (TSA: Calanus finmarchicus comp768913_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.726e+0
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:   48 IATLIPFTSCRPSEKSRELHKEHDL 72
            +ATL+PFT C P +  R+ H  +D+
Sbjct:  155 VATLLPFTECDPQQLERKRHIGNDI 229
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BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592848091|gb|GAXK01109453.1| (TSA: Calanus finmarchicus comp951065_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.860e+0
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   79 AELKVWQSQESRILSETTGYWIKE 102
            A+LKVW+ ++S +L E T Y IKE
Sbjct:  481 ADLKVWEDRDSFLLDEDTRYKIKE 552
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BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592774730|gb|GAXK01179838.1| (TSA: Calanus finmarchicus comp768913_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.897e+0
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:   48 IATLIPFTSCRPSEKSRELHKEHDL 72
            +ATL+PFT C P +  R+ H  +D+
Sbjct:  155 VATLLPFTECDPQQLERKRHIGNDI 229
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592848092|gb|GAXK01109452.1| (TSA: Calanus finmarchicus comp951065_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.959e+0
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   79 AELKVWQSQESRILSETTGYWIKE 102
            A+LKVW+ ++S +L E T Y IKE
Sbjct:  481 ADLKVWEDRDSFLLDEDTRYKIKE 552
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592848093|gb|GAXK01109451.1| (TSA: Calanus finmarchicus comp951065_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.976e+0
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   79 AELKVWQSQESRILSETTGYWIKE 102
            A+LKVW+ ++S +L E T Y IKE
Sbjct:  481 ADLKVWEDRDSFLLDEDTRYKIKE 552
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592848094|gb|GAXK01109450.1| (TSA: Calanus finmarchicus comp951065_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.987e+0
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   79 AELKVWQSQESRILSETTGYWIKE 102
            A+LKVW+ ++S +L E T Y IKE
Sbjct:  481 ADLKVWEDRDSFLLDEDTRYKIKE 552
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592816960|gb|GAXK01137608.1| (TSA: Calanus finmarchicus comp165153_c0_seq33 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.484e+0
Identity = 17/58 (29.31%), Postives = 28/58 (48.28%), Query Frame = 0 
Query:   65 ELHKEHDLQPSPKAAELKVWQSQESRILSETTGYW-IKEESSHSQNSPEKSYLFEHYS 121
            + H  H+  P P+ A      S +SR     TGY+  + E++ +    E+ YL +H S
Sbjct: 2977 DSHTSHNHNPHPRDASFARDSSFDSRRSGPDTGYYSDRNEAARNGYRDERGYLSDHSS 3150
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592816961|gb|GAXK01137607.1| (TSA: Calanus finmarchicus comp165153_c0_seq32 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.488e+0
Identity = 17/58 (29.31%), Postives = 28/58 (48.28%), Query Frame = 0 
Query:   65 ELHKEHDLQPSPKAAELKVWQSQESRILSETTGYW-IKEESSHSQNSPEKSYLFEHYS 121
            + H  H+  P P+ A      S +SR     TGY+  + E++ +    E+ YL +H S
Sbjct: 3061 DSHTSHNHNPHPRDASFARDSSFDSRRSGPDTGYYSDRNEAARNGYRDERGYLSDHSS 3234
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592816962|gb|GAXK01137606.1| (TSA: Calanus finmarchicus comp165153_c0_seq31 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.489e+0
Identity = 17/58 (29.31%), Postives = 28/58 (48.28%), Query Frame = 0 
Query:   65 ELHKEHDLQPSPKAAELKVWQSQESRILSETTGYW-IKEESSHSQNSPEKSYLFEHYS 121
            + H  H+  P P+ A      S +SR     TGY+  + E++ +    E+ YL +H S
Sbjct: 3088 DSHTSHNHNPHPRDASFARDSSFDSRRSGPDTGYYSDRNEAARNGYRDERGYLSDHSS 3261
[Close]
BLAST of EMLSAG00000001866 vs. C. finmarchicus
Match: gi|592816963|gb|GAXK01137605.1| (TSA: Calanus finmarchicus comp165153_c0_seq30 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.493e+0
Identity = 17/58 (29.31%), Postives = 28/58 (48.28%), Query Frame = 0 
Query:   65 ELHKEHDLQPSPKAAELKVWQSQESRILSETTGYW-IKEESSHSQNSPEKSYLFEHYS 121
            + H  H+  P P+ A      S +SR     TGY+  + E++ +    E+ YL +H S
Sbjct: 3172 DSHTSHNHNPHPRDASFARDSSFDSRRSGPDTGYYSDRNEAARNGYRDERGYLSDHSS 3345
[Close]
BLAST of EMLSAG00000001866 vs. L. salmonis peptides
Match: EMLSAP00000001866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1321:102967:104918:1 gene:EMLSAG00000001866 transcript:EMLSAT00000001866 description:"maker-LSalAtl2s1321-augustus-gene-0.15")

HSP 1 Score: 278.87 bits (712), Expect = 3.218e-97
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 QKVNIPVLGRSYFFFKIIEPTSYFSHIKIIIIINTLNMKVSHVMIILIATLIPFTSCRPSEKSRELHKEHDLQPSPKAAELKVWQSQESRILSETTGYWIKEESSHSQNSPEKSYLFEHYSILDLFNSTSPSHVDAQ 137
            QKVNIPVLGRSYFFFKIIEPTSYFSHIKIIIIINTLNMKVSHVMIILIATLIPFTSCRPSEKSRELHKEHDLQPSPKAAELKVWQSQESRILSETTGYWIKEESSHSQNSPEKSYLFEHYSILDLFNSTSPSHVDAQ
Sbjct:    1 QKVNIPVLGRSYFFFKIIEPTSYFSHIKIIIIINTLNMKVSHVMIILIATLIPFTSCRPSEKSRELHKEHDLQPSPKAAELKVWQSQESRILSETTGYWIKEESSHSQNSPEKSYLFEHYSILDLFNSTSPSHVDAQ 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001866 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001866 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592774729|gb|GAXK01179839.1|1.726e+044.00TSA: Calanus finmarchicus comp768913_c0_seq2 trans... [more]
gi|592848091|gb|GAXK01109453.1|1.860e+054.17TSA: Calanus finmarchicus comp951065_c0_seq4 trans... [more]
gi|592774730|gb|GAXK01179838.1|1.897e+044.00TSA: Calanus finmarchicus comp768913_c0_seq1 trans... [more]
gi|592848092|gb|GAXK01109452.1|1.959e+054.17TSA: Calanus finmarchicus comp951065_c0_seq3 trans... [more]
gi|592848093|gb|GAXK01109451.1|1.976e+054.17TSA: Calanus finmarchicus comp951065_c0_seq2 trans... [more]
gi|592848094|gb|GAXK01109450.1|1.987e+054.17TSA: Calanus finmarchicus comp951065_c0_seq1 trans... [more]
gi|592816960|gb|GAXK01137608.1|4.484e+029.31TSA: Calanus finmarchicus comp165153_c0_seq33 tran... [more]
gi|592816961|gb|GAXK01137607.1|4.488e+029.31TSA: Calanus finmarchicus comp165153_c0_seq32 tran... [more]
gi|592816962|gb|GAXK01137606.1|4.489e+029.31TSA: Calanus finmarchicus comp165153_c0_seq31 tran... [more]
gi|592816963|gb|GAXK01137605.1|4.493e+029.31TSA: Calanus finmarchicus comp165153_c0_seq30 tran... [more]

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BLAST of EMLSAG00000001866 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018663.218e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1321:1029... [more]
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BLAST of EMLSAG00000001866 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001866 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001866 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001866 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1321supercontigLSalAtl2s1321:102967..104918 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1321-augustus-gene-0.15
NoteHypothetical protein
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001866 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001866EMLSAT00000001866-697713Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1321:102967..104918+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001866-684632 ID=EMLSAG00000001866-684632|Name=EMLSAG00000001866|organism=Lepeophtheirus salmonis|type=gene|length=1952bp|location=Sequence derived from alignment at LSalAtl2s1321:102967..104918+ (Lepeophtheirus salmonis)
CAAAAAGTGAATATCCCAGTGTTAGGAAGAAGTTATTTCTTCTTCAAAAT
AATAGAACCTACATCATACTTTTCTCACATCAAAATAATAATTATTATAA
ACACTTTAAACATGAAAGTTTCACATGTTATGATTATACTTATTGCAACC
CTAATTCCATTCACAAGTTGTCGACCCTCAGAGAAGTCAAGGGAGTTGCA
TAAAGAACATGACCTACAACCATCACCCAAGGCTGCTGAATTGAAGGTAT
GGCAGTCCCAGGAGAGTCGAATCTTGTCTGAAACAACGGGTAAGTGAAGA
AAAGTATCCTTGATAGATCCTTTTTTCTATATCCGTGGTCAAGTAAGTCT
GAGTCTAATGGTAGGCTGCAGGACTGAGAAGATTTTTAGATATTACCATG
GGATAAATAGAGAACAATACGCAATTTTAGNNNNNGTAGGCCCCTGAACC
CTTAGTATCCTGGGTTTCATCCCAGGTTAGTCCTGAAAGTGTAAATTACG
TGTATTTTCCAACTTAGGCTTTTTGGAGCCTTTGTGCTCCTCATTGTATC
GTTAAGGGCTCTACCAAAGATCACGTAAATAACAAAATAATTTAGAGATT
ATAATAAATTGGCCAAAGGACAGTTTTAGGGGGCATACACTCCCTTCCTG
CGACTTATTATACAAAATAAGGAGTCTGTAAGTGGTTGAGTAATTATTAT
CACTTAAAAAAATATAATTAACGGCCAATTTTTAATAAGGTAATTTAAAA
AGATCAAAAATAAAAATTCATATTATATTTAAAAATATCAAAATCAAAAA
TTCATATAAAAAAATTTAAACTTATATTWAAAAAAATCAAAAYWWCYTAT
TAAAAAAAATCAAAATATTTATTAAAAWAATTAATAWATKAAAAAATTAG
AATNCAAAAATTCATATTAAAAAAAATCAAAAATTCGTATTAAAAAAAAT
CAAAAATTTATATTTAAAATAAAATAAATCAAAAATTTCTYTTTTTTAAA
AGAAATCAAAATTACAAGTTCCTAAAAAAACAAAAGCATTAAAATACGCC
TATGTATTTTCTTTTCCTCAAATAACAAAATAATTCGGAGTTTTTTTTTA
GAAACGCAAGAATTCAAGATAATCTTCGGAAAAAACACGATAATTCAAAT
TAAAAAAAATGAAATGAAATTCAAATTTGGAAGAAAGAACTAAAAGGACT
CAGCATATTTATGTTATCCCTAGGCCCCTTTTATGATTAACTGGCTCTGT
TCACACTTAAAAAAGGCTACATTGGTCCATTGTGCTAAAAAGATTAGACC
CTACTGCTTTACAGATATAATTAAATTATTTGAAACACTCTTAAATAAAA
ATAATTGTAACAATGAATGCCACAACCTGTAGTAATTACACAAGATTATT
ACTAATTTTTTAGGGAACTTTTACTTTACTTGTTCCATTAATGCATCGTA
AATGATCAAAGATGTCCGAAACGAGTCTGTGTTAACATCACATTAAACAA
AATGTCTACACATATATCAATTTGACTAGGTACATGACATATATAGACCA
AATGACCAAAAAACAAAAGAAATATTTCCAAAAAAATAATTATTTAACGT
CATTTAATAAGATTTATTTATTGACTAAATCATTATTATTATTTTGTCTC
ATAGGTTACTGGATAAAGGAAGAATCGTCACACTCTCAGAATAGCCCTGA
AAAAAGTTATCTCTTTGAACATTACTCCATTTTGGATTTATTCAATAGCA
CATCACCCTCACATGTAGATGCTCAATAATTAACACCACTTTTCCTGTAC
CTCTCCCTTTAACTATAAATAAATGTTTATAAGACTGTGATATATTTTCA
TCAAATTTTGTCTGATGATATCGAATTCATTTAGTTTTTTAGTGTATATG
TATTTTATAGACTGTCAACTAACACTTTTTGAATAAATAGTATATATTTT
TT
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