EMLSAG00000001883, EMLSAG00000001883-684649 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001883
Unique NameEMLSAG00000001883-684649
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Match: gi|592883241|gb|GAXK01075134.1| (TSA: Calanus finmarchicus comp5626560_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.485e-1
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 0 
Query:   55 MIVKKPLGEVEKLYPDEFCEKILARKDVLWEVYLKI 90
            M+VK PL EVEKL P+E  +K L     L +  LK+
Sbjct:  277 MMVKHPLKEVEKLKPEEHSDKFLIDLPFLVDFDLKL 384
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Match: gi|592856000|gb|GAXK01101544.1| (TSA: Calanus finmarchicus comp1429772_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 7.950e-1
Identity = 11/34 (32.35%), Postives = 22/34 (64.71%), Query Frame = 0 
Query:    9 ASRQDTDQIYELVNSTFAFEIGETGISYRLGNKY 42
            A   D + I  +VNS +  E+G+TGI+++  +++
Sbjct:  445 AESADIESIVNVVNSAYRIEMGDTGIAFKSTDRF 546
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Match: gi|592916638|gb|GAXK01041737.1| (TSA: Calanus finmarchicus comp1059020_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.657e+0
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 0 
Query:   62 GEVEKLYPDEFCEKILARKDVLWEVYLK 89
             + E   PD FCE +  R D  WE Y++
Sbjct: 1544 ADAEAWGPDPFCEHLPFRSDEYWECYVR 1627
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Match: gi|592781979|gb|GAXK01172589.1| (TSA: Calanus finmarchicus comp1350237_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.146e+0
Identity = 14/42 (33.33%), Postives = 24/42 (57.14%), Query Frame = 0 
Query:   10 SRQDTDQIYELVNSTFAFEIGETGISYRLGNKYLLRDTARKN 51
            +R+D D++ +   +  A +I  TG+ Y    KY+ RD A +N
Sbjct:    4 AREDVDEVSDKSLTCMAHDIA-TGLGYLAEQKYVHRDVAARN 126
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Match: gi|592834823|gb|GAXK01122721.1| (TSA: Calanus finmarchicus comp1208072_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.981e+0
Identity = 16/52 (30.77%), Postives = 27/52 (51.92%), Query Frame = 0 
Query:    1 MPKAHLGRA-SRQDTDQIYELVNSTFAFEIGETGISYRLGNKYLLRDTARKN 51
            + + HL    SR+D D++     +  A ++   G+SY    KY+ RD A +N
Sbjct:   38 LARRHLASGNSREDVDEVSNKRLTAMAADVA-AGLSYLADQKYVHRDVAARN 190
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BLAST of EMLSAG00000001883 vs. L. salmonis peptides
Match: EMLSAP00000001883 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:18183:21786:-1 gene:EMLSAG00000001883 transcript:EMLSAT00000001883 description:"maker-LSalAtl2s1324-snap-gene-0.22")

HSP 1 Score: 219.164 bits (557), Expect = 1.127e-74
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 
Query:    1 MPKAHLGRASRQDTDQIYELVNSTFAFEIGETGISYRLGNKYLLRDTARKNLEDMIVKKPLGEVEKLYPDEFCEKILARKDVLWEVYLKIKNNKSDQMDDDDSDDN 106
            MPKAHLGRASRQDTDQIYELVNSTFAFEIGETGISYRLGNKYLLRDTARKNLEDMIVKKPLGEVEKLYPDEFCEKILARKDVLWEVYLKIKNNKSDQMDDDDSDDN
Sbjct:    1 MPKAHLGRASRQDTDQIYELVNSTFAFEIGETGISYRLGNKYLLRDTARKNLEDMIVKKPLGEVEKLYPDEFCEKILARKDVLWEVYLKIKNNKSDQMDDDDSDDN 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001883 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001883 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592883241|gb|GAXK01075134.1|4.485e-147.22TSA: Calanus finmarchicus comp5626560_c0_seq1 tran... [more]
gi|592856000|gb|GAXK01101544.1|7.950e-132.35TSA: Calanus finmarchicus comp1429772_c0_seq1 tran... [more]
gi|592916638|gb|GAXK01041737.1|1.657e+039.29TSA: Calanus finmarchicus comp1059020_c0_seq1 tran... [more]
gi|592781979|gb|GAXK01172589.1|5.146e+033.33TSA: Calanus finmarchicus comp1350237_c0_seq1 tran... [more]
gi|592834823|gb|GAXK01122721.1|5.981e+030.77TSA: Calanus finmarchicus comp1208072_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001883 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018831.127e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:1818... [more]
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BLAST of EMLSAG00000001883 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001883 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001883 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001883 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1324supercontigLSalAtl2s1324:18183..21786 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1324-snap-gene-0.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001883 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001883EMLSAT00000001883-697730Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1324:18183..21786-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001883-684649 ID=EMLSAG00000001883-684649|Name=EMLSAG00000001883|organism=Lepeophtheirus salmonis|type=gene|length=3604bp|location=Sequence derived from alignment at LSalAtl2s1324:18183..21786- (Lepeophtheirus salmonis)
ATGCCAAAAGCTCACCTGGGAAGAGCCTCAAGACAAGATACAGATCAAAT
ATATGAATTAGTCAACTCTACGTTTGCCTTTGAAATCGGAGAAACAGGAA
TTTCCTATAGACTGGGAAATAAATATCTGCTTCGTGATACTGCTCGTAAA
AATTTAGAAGACATGATAGTGCTTCGTATAAATCGGAAAATTATTGGATG
TGTCAAGGCATTATAGAAATTTTTTAACTTCTAACAAACTGGTTCATTTC
GCCCTATTTCTAGGTTACATCACATAATGGCCTATCAGAAATAGGACATT
TAGCAGTACATCCTGATCACCAGAAGAGAGGATATGGAAGGATCCTTATG
GATGSTGCAGAGGAAAATGCACGGGGKCCTCGGATCACCGTGGGTATACC
GTCCTGCAGAACAGATATTAAAGGTTTTTTTGAGAATCGCGGATTTAAGG
TAAACTGATATTTCTCTCTAATTTCCCTATATATAATTATGTCATTATTG
TAAAGAAAAATGAGGGCAAGGAAAAGGCAGGAGCAATTTTTTTGTTATTA
AGACTCTTGTTATTATTAGTTACCCTCTATATGATTTTGGAGATGAAAAT
GAATTAATGCTATAAAGAGGAAAAAATTTTATATTTAAAATAGCATTAGT
TATAGGCAAATATTATCATTATCGTTCAATTAAAATATATTTATTTTATT
ATGCATTTTTAAAACAATCTACCCCAAAGATAAGCGATAATGCTTAATTC
AGGGGGAAAAATTGACATGAAGACAACCTTAGAAATAATTTAAAAAAATG
AGCACATACAGCAATCGTGTTTCCTTCTGCAATTTCTAAACTTAGTTTTT
CATTTCAAAAATGACATCCTTATATATATTGTATATATTGTCACTTTGAT
AGTTAGTAGCTACATCATTTCAGCTGTTGTAGTGAAAATAAAAGACCTGT
CCTAAGATTGACAAATTTTATTTGGACTGGACTGATAGGAATGCAGTATT
TTAAGTTTTTTTAGACCGATCCAACACAACTCATACGGGATCTAGATAAG
ATCAAAGTTCCTTCCAATTGTATTGCACGGCTCTCTAAATAACTTTATCT
TTATCTAATTTTAGATAATTATATTTACGTAACATTTTTTTTTGCTTTAG
AATTTCCCAATGAAATTAATTATTAATTAAATTTAAAATAAAGCGCCATT
AAATAAAACTCTATTACAGCTCAAGGTAAAAAAACCATTAGGAGAAGTGG
AAAAACTATATCCGGACGAATTTTGTGAAAAGGTAAGTGAACTATCAAGT
TAAAAAGTATACTTAAATTTAATGGAATCTAATTTGATTTACAATCAATC
ACCTGTAGGGCATTTTCTTTGATTTTATAGATTATGGTTTATCACATATA
CTAAAGCAATATTAGGGGTCTAGTTGATATATGGTCTAAAAAAAAATTTG
TTCCAAATATCTGTAAAATATTATATATGCGTATATATCAACTTGGTGCT
TAAGAAAATCAGTGATTTTTGACGTAAATCTACTGTTTATATACTGAAAA
TCCTCATGAAATAGTTAATTTTTTAAAAATTTACTTTGCATTGATTAGGA
GCGGGAAACAAATGATAGTTTAAAAAAATAATTCTATTCATACAAACGTA
GTAGTTAATTTATTGTCTTCACTATGTAGTTAAGAATACATAATTAGAGT
GCGCACTATGAATGTAGCATGTCGAAGGATTACAAAAATAGTTTTGGGAT
AACTTTAAGTCTTTTCAAAGCTCGCCACGACCATTTTAAAGACTTTTAAT
AATTCTACAAAAAATATTAGGATATTTTGGATATGGCACAAACGAAATTC
CCTTGGCAGAACATTACCCAAGTAGTCAGCTGAACAAATTTATTAATTTA
AAATTTATACGAAATTAAATAATAAACTTTGAAAATCTCTCGCAAAAAAA
AACATGTTGCGTAGTTCAAATGAATTTGAAACAAGATTAATGACCAAAAC
TTCTAGATATTGAAGAATTACATAACTTAATTTGGGAGAACTGCAATTTT
TTTTATTTGGAAGAAGATGGGAGTTGGGTTGTGTTTTTAAAAGAGTATGG
ACCTTGTTTACAATATTATATTTTCTATGTTAGTAATTAAATTGATTACA
TTCAATTAATCAAGTTCATGTTCTCTAGGACCTCAACAGATTCGTCTTCC
TTTTCAAAAATCAAACAACTTGCAGGACTCAAAGTTTAAATAATATAATT
CTCAAGATATCATTGCTTACTTGGTGACTTATGTATTTATTTGAGAGTGA
CAAACTTCCCTTCTCACATCAAAATAGTGAAATATTGTTCGATGCATATG
TATAATTAAATATATTATCGTAATCTGATACTCAAATTAGCCAAAATCTC
TAAAATATCATAGTTTAATTTTAGAAACACTTAGTGTGAAGGCAAAACTA
TTTCTTGTCGTCTTTAGATATGCTACATTCATTCTTCAAGTGAGAATCTT
CATACTATTTAATTTTCAAAAATAATGATCACTATTATGTACGCATAATA
ATTAGGAATGTGAATCAGAATCTTCAAAAAAAAAATTATGTTGGTAATCT
GCAAAATATTAGTGGCTTCTTAATAATTATTTATCCTTATTTTTAAAAAT
TCAAACGCATTAGCGGCCTAAGAACACTACAGTTTTTATTGAGCGCTTAC
ATCGACGTCATAAATTGCATTATCATTGATGTACCAGCCATCTTGGAGAT
TTAAATTTAATATTTTTAACCTTAAAATGTACAAAATTTCTAATAAATCT
TGCTTTAACTCCTTCAAGTGGGCATAAGGATATACTTATACATTTTAACA
CCTGCATTGAATAGGTACTAATTGATTCCAATGATGAACACTGATAATTA
GATTAAATTTAACTAATATATACTGAAAATCCCATAAATTTGGCGGGATT
TGAACAATATTTTTTTTGTTTTGATCGATTAAGGATGAAAATAGTAGAAG
AATTAGAGAAAATATCTTATTCTTTCCAATCTAATATCTAATTTTTATCT
ACAGTATGGAAATCAATTAATATATAATATTTTTGATAGGCAATAAAGTT
TTAGTCCTATAATACAATGCAAATAGTAGTTAACCCTTTTCAATAACACA
CAAAATTAGCGACATCTAGCACTTAAAAACAACACCAATGCTCATAGTAT
TTATTAAAGCGCATAGGAAAAAATATCACACGTCTAGACTTATTTAATTC
ATTTATGTCAGTATATGTATTTCAAGTATATCTTATTTCACCTCTTTATT
TCTTACCTACTCTGAAATTGCATCTTGAACAGGGCGTACAACATCAGAAT
TTAACTAAATATTTATATGAAAAATTTCCCTTTTCTATACAAAGAAGATA
TTTCTAGGCCCTCTAAATACACTATGCTTGTCTAAGTGATGTATCGATGT
ATCGTAATTTTGACCTTAAAATGAAACATATTTAACAATACTATTCAATG
TATTCCAGATTTTGGCTCGAAAGGACGTACTATGGGAAGTTTATTTAAAA
ATCAAGAATAATAAATCAGATCAAATGGATGATGATGACTCTGACGACAA
TTAG
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