EMLSAG00000001887, EMLSAG00000001887-684653 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001887
Unique NameEMLSAG00000001887-684653
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001887 vs. C. finmarchicus
Match: gi|592879895|gb|GAXK01078006.1| (TSA: Calanus finmarchicus comp1133658_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 2.331e-2
Identity = 25/101 (24.75%), Postives = 50/101 (49.50%), Query Frame = 0 
Query:    5 FHKQFKTIQTDSQCLVLTLSNKNDNLSIQ----NRGFRRSKSLKSLLFILNNLITFV-FSSL--------LASQFNQISQIDLDLHEEGIKFRTEFNSFLS 92
            F   +  IQ D+  ++   + ++   + Q    ++ F R  ++       N+ + F  F SL        L + F++I Q++++L EEG + RT+F +FL+
Sbjct:  167 FEPCWPAIQRDAHGVIFVFNPESAAQAKQLETFHQAFVRGPTVSE-----NSCVVFAHFLSLSRERRGAKLPTTFSRIPQLEVNLEEEGNRLRTDFQTFLA 454
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BLAST of EMLSAG00000001887 vs. L. salmonis peptides
Match: EMLSAP00000001887 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:9365:9703:1 gene:EMLSAG00000001887 transcript:EMLSAT00000001887 description:"maker-LSalAtl2s1324-snap-gene-0.18")

HSP 1 Score: 209.534 bits (532), Expect = 7.351e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MLELFHKQFKTIQTDSQCLVLTLSNKNDNLSIQNRGFRRSKSLKSLLFILNNLITFVFSSLLASQFNQISQIDLDLHEEGIKFRTEFNSFLSFKTFKQHNRQDSSRRN 108
            MLELFHKQFKTIQTDSQCLVLTLSNKNDNLSIQNRGFRRSKSLKSLLFILNNLITFVFSSLLASQFNQISQIDLDLHEEGIKFRTEFNSFLSFKTFKQHNRQDSSRRN
Sbjct:    1 MLELFHKQFKTIQTDSQCLVLTLSNKNDNLSIQNRGFRRSKSLKSLLFILNNLITFVFSSLLASQFNQISQIDLDLHEEGIKFRTEFNSFLSFKTFKQHNRQDSSRRN 108
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BLAST of EMLSAG00000001887 vs. L. salmonis peptides
Match: EMLSAP00000001888 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:942:1778:1 gene:EMLSAG00000001888 transcript:EMLSAT00000001888 description:"maker-LSalAtl2s1324-augustus-gene-0.13")

HSP 1 Score: 108.997 bits (271), Expect = 9.949e-32
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0 
Query:    1 MLELFHKQFKTIQTDSQCLVLTLSNKNDNLSIQNRGFRRSKSLKSLLFILNNLITFVFSSLLASQFNQISQIDLDLHEEGIKFRTEFNSFLS 92
            MLELFHKQFKTIQTDSQCLVLTLSNKNDNLS++NRGF+                       L SQFN+I+QID++L+EEG KFRTEFNSFLS
Sbjct:    1 MLELFHKQFKTIQTDSQCLVLTLSNKNDNLSMKNRGFK-----------------------LPSQFNRITQIDVNLNEEGNKFRTEFNSFLS 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001887 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001887 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592879895|gb|GAXK01078006.1|2.331e-224.75TSA: Calanus finmarchicus comp1133658_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001887 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000018877.351e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:9365... [more]
EMLSAP000000018889.949e-3264.13pep:novel supercontig:LSalAtl2s:LSalAtl2s1324:942:... [more]
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BLAST of EMLSAG00000001887 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001887 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001887 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001887 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1324supercontigLSalAtl2s1324:9365..9703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1324-snap-gene-0.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001887 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001887EMLSAT00000001887-697734Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1324:9365..9703+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001887-684653 ID=EMLSAG00000001887-684653|Name=EMLSAG00000001887|organism=Lepeophtheirus salmonis|type=gene|length=339bp|location=Sequence derived from alignment at LSalAtl2s1324:9365..9703+ (Lepeophtheirus salmonis)
ATGCTGGAGCTGTTTCACAAACAGTTTAAAACTATTCAAACGGATTCACA
ATGTTTAGTTCTCACTTTATCTAACAAAAATGATAATTTATCGATACAGA
ATCGGGGTTTCAGGCGTAGTAAGTCACTTAAAAGTTTACTTTTCATTTTG
AATAATGTATTTGAATAGTTAATTACGTTCGTATTTTCTTCCCTGTTAGC
ATCACAATTTAATCAAATTTCTCAAATTGATCTCGATTTACATGAAGAAG
GGATCAAGTTCAGAACTGAATTCAATTCATTTTTATCTTTTAAAACTTTT
AAACAACATAACCGACAAGATAGTTCAAGAAGAAATTAA
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