EMLSAG00000001897, EMLSAG00000001897-684663 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001897
Unique NameEMLSAG00000001897-684663
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001897 vs. C. finmarchicus
Match: gi|592839463|gb|GAXK01118081.1| (TSA: Calanus finmarchicus comp125187_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.914e+0
Identity = 21/75 (28.00%), Postives = 43/75 (57.33%), Query Frame = 0 
Query:  144 KKSL--LKVNNRERMSTYRADMTGTERDAVKSANRNYMSQVRSDLSQKDRDKASSDKRVQEYRAYMMQQSRDDKF 216
            KK+L  +KVN +  +S  ++ + G   D VKS+    ++++ + LS KD    S+ K+++     ++++SR+ K 
Sbjct:  132 KKTLGPVKVNEKGSLSPRKSGVAGGFADIVKSS----INKLLAKLSGKDAGNTSAGKQLKSKVETLLEKSREKKI 344
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BLAST of EMLSAG00000001897 vs. C. finmarchicus
Match: gi|592839464|gb|GAXK01118080.1| (TSA: Calanus finmarchicus comp125187_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.669e+0
Identity = 21/75 (28.00%), Postives = 43/75 (57.33%), Query Frame = 0 
Query:  144 KKSL--LKVNNRERMSTYRADMTGTERDAVKSANRNYMSQVRSDLSQKDRDKASSDKRVQEYRAYMMQQSRDDKF 216
            KK+L  +KVN +  +S  ++ + G   D VKS+    ++++ + LS KD    S+ K+++     ++++SR+ K 
Sbjct:  132 KKTLGPVKVNEKGSLSPRKSGVAGGFADIVKSS----INKLLAKLSGKDAGNTSAGKQLKSKVETLLEKSREKKI 344
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BLAST of EMLSAG00000001897 vs. L. salmonis peptides
Match: EMLSAP00000001897 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1325:85035:88385:1 gene:EMLSAG00000001897 transcript:EMLSAT00000001897 description:"maker-LSalAtl2s1325-snap-gene-0.37")

HSP 1 Score: 484.952 bits (1247), Expect = 2.024e-175
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0 
Query:    1 FRDCRDLKPIPVEQHQSVGLGNGVVGGVVGPVGNGCGLVHGGGSNGSQLKQTFMSDPQNRQQVVNHLSNLPENVKLMILNNYRDFMSNRHLYLTHEQIAEIDRAINRARTSRRRAEMSQEERAVMNQSKREYMSRYRAKMTQEKKSLLKVNNRERMSTYRADMTGTERDAVKSANRNYMSQVRSDLSQKDRDKASSDKRVQEYRAYMMQQSRDDKFWVREDFFKCWPHQYS 231
            FRDCRDLKPIPVEQHQSVGLGNGVVGGVVGPVGNGCGLVHGGGSNGSQLKQTFMSDPQNRQQVVNHLSNLPENVKLMILNNYRDFMSNRHLYLTHEQIAEIDRAINRARTSRRRAEMSQEERAVMNQSKREYMSRYRAKMTQEKKSLLKVNNRERMSTYRADMTGTERDAVKSANRNYMSQVRSDLSQKDRDKASSDKRVQEYRAYMMQQSRDDKFWVREDFFKCWPHQYS
Sbjct:    1 FRDCRDLKPIPVEQHQSVGLGNGVVGGVVGPVGNGCGLVHGGGSNGSQLKQTFMSDPQNRQQVVNHLSNLPENVKLMILNNYRDFMSNRHLYLTHEQIAEIDRAINRARTSRRRAEMSQEERAVMNQSKREYMSRYRAKMTQEKKSLLKVNNRERMSTYRADMTGTERDAVKSANRNYMSQVRSDLSQKDRDKASSDKRVQEYRAYMMQQSRDDKFWVREDFFKCWPHQYS 231
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001897 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001897 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592839463|gb|GAXK01118081.1|2.914e+028.00TSA: Calanus finmarchicus comp125187_c0_seq2 trans... [more]
gi|592839464|gb|GAXK01118080.1|3.669e+028.00TSA: Calanus finmarchicus comp125187_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001897 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018972.024e-175100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1325:8503... [more]
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BLAST of EMLSAG00000001897 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001897 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001897 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001897 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1325supercontigLSalAtl2s1325:85035..88385 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1325-snap-gene-0.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001897 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001897EMLSAT00000001897-697744Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1325:85035..88385+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001897-684663 ID=EMLSAG00000001897-684663|Name=EMLSAG00000001897|organism=Lepeophtheirus salmonis|type=gene|length=3351bp|location=Sequence derived from alignment at LSalAtl2s1325:85035..88385+ (Lepeophtheirus salmonis)
TTCAGGTTCATGAGATTTTCATTTGGGAGATAACATAAGGTATATACTCA
TACATATGTGTACTCAATATGGCTCSAGGCAAGCGGRAGMCTACACTCGC
TCGATACACAGTTCGGGAAAAAGACTACAGGGACTGTCGTGACTTAAAAC
CTATACCAGTTGAGCAACACCAAAGTGTTGGATTGGGCAATGGCGTCGTT
GGAGGTGTTGTAGGTCCTGTTGGCAATGGTTGTGGATTAGTTCATGGAGG
AGGCTCTAACGGATCACAGCTCAAACAAACCTTTATGAGTGATCCCCAAA
ATAGACAGCAAGTCGTGAATCACTTGTCAAATCTCCCTGAGAATGTAAAA
CTAATGATTCTGAACAACTATAGGGACTTTATGTCAAATAGACATTTATA
CCTCACGCATGAACAAATTGCTGAGATTGACAGAGCCATCAATAGAGCAC
GAACCTCCAGACGTCGAGCAGAAATGAGTCAAGAGGAAAGAGCTGTCATG
AATCAATCAAAGCGTGAGTACATGTCTCGCTATCGGGCCAAAATGACTCA
GGAAAAGAAATCACTCTTAAAAGTAAATAATCGTGAGCGGATGTCAACTT
ACAGAGCTGACATGACGGGAACGGAAAGAGATGCTGTTAAGTCTGCTAAT
CGGAATTATATGTCTCAAGTACGCTCCGATCTATCACAAAAGGATAGGGA
TAAAGCAAGTTCAGATAAACGAGTGCAAGAATATAGAGCTTACATGATGC
AACAGTCACGGGACGACAAATTCTGGGTACGTGAGGACTTTTTTAAGGTA
AAAAAAAAACAAACTTAAAAATAAAAGCTTTGATGCATCGAAATCAATCT
CTAAAATCTAAGTGGGAGTCCTTTTTAGTGTGTGATGATAACCTATCACA
TTTTCCATTTATGTTGAGTTTTTGGACTATTATTATATATATATATAGAT
TTAGTAGTGATGGAATTGGTATCGAGTATCTGTGGGATACCAACGTTCAA
TACCAAAACTTAAAGACATATTTACCAGGGGCGTTTTTGAAAAAAATTCC
AAAAACTAAATCCAAAAATTTCAAAAATCCACAGCTGTTCATAAAAAAAA
TTTCAATAATTTAATTATGAATATTATTATTTTCTTCCGAAAAATTCTAA
AAATCCACAGCTGTTTATAAAAATTTTATTTTTTTTGGAAAAAAATATCA
ATAAATAAATTATGAATATTATTATTTATTTTAATTTTAAAAATCTATAG
CTATTCATAGAAAATTTAATTTTTGGAAAAAAATTCAAAAAATTTATTTT
TGGATATTACGGGGGGGGGGGGTTACTGTCCCTTCAGCCCACACCCTGCG
AAAACCCCYATTTATAAAAWAATAATTTTTTCTCTTGTAGCTGGAATAAG
AAAAAATTATATTATGGTTTCTTATGTATGAAATCTTCATAAGTATTTTA
AGTAAAATGACCACATTTTGATTTCCGAAAAATCGAACATTGAGCCCCAT
CAGTAACTGTTTTAGTATGAGATTTGTGTAAAATTAATATATTATAAAAC
TTGATTTTTAAGGCACTCAGGTATTGAAATCAGTTCGGTGTGAAATTTTC
AATCTTACTACGTGAACTCATTAGTGTAATGGTGTCATTAAACCGTTTTA
TAATTAAAGATAGGATTAATATGTAGTAAAATAATGTTAATTGACTTCAG
ATTAAGCATTAAATTGTAAGTAATGTTTTTTGTTAAGTCCTTTATACCGG
CTTCTGTTGGAAAAATTGGGGKTTCATCTCGGATATTTTGAATTGGTTTA
ATTGACAATGCGTGAGAAATGACACATGTGGCGAAAGAGTGTGAGACTGA
CTGGAAATGTGCGAGACTTGAGAGCCCTGTATTTTGAATTTAGTATTAGT
TTGAAAATGAATCAAGAAAAAATATCTTGGATCTTCATAAAGCTCCTAAA
ACCGGAACATTTCTTAGATTTATAATAAATTCCCCAGACAGGGTTGAAAA
AGATGACATGTCCTGGGAAAAAAGAACGGTTAGTCACCACCAAATACATA
ACTTCTTTGGTTCACTCTAGTTTAAATCTATATTTATAGTGGCTCTACAC
GAAATTATAAAATTGAATAAGGATACAAAACTTAATTATGTACGTGTACT
CAGGGCTGGCCTTAACTATTGTGGTTCCTTTGCAAAACAGATTGTATGGA
GCCCGAATCCCAAACTGGGTAGGAATAAAGATGATAACTGATGCCATGGT
CGTTTTAGCGTGAGCATGGCTTGGGATATAGATAAATTTCGTAACTCTTT
GAATTCAATTTCGAATTTTCTTCTATAAGAAAGAAAAATGCGGTTTTTTT
AGAGTTTATTTTCTTTAAGTCCTTGTTTTAGAAAATACATTTCATATTTT
TAATTAAATGCGGAGCCTACTGCAAGTTGCAATGGCCTACGGCAGACCCT
TTTCATGTACTCGGTACTTCTATTATGAATAAATCAATACTTGGTATTCG
TTTTAAAATCTGTTAACTTACAATCACTACAAATTATTTATTAATTCACG
TACTTATATGATTTTTTTCTTATCATTCCAGTGCTGGCCACATCAATACT
CCTAAGTCCTTAAGTATTACAAGACAATTAATTCATCTCCGGTCCTTCCA
AAAAGACAATAATAACACATGTTTATAAAAATCACTTTCAAGACTGTTCT
AAGAAACAAAATTTGTGGAGAAGATAATACTTAATACTGTCTCAACATTC
TCATTGCGGATAAAAACTCGATCACAACTTTCCTACCTTTTAATCAACTA
CTCTTGTCATACCCAAGCTTCACAATAACTATGTTCTCAAATAATACACG
AATGCCATTCGATGAGAATAAGTTTGTGAAGAAACTCTTATAATAATATA
ACTATTAATTATATGAAACGAAATAGAAAATAATTTTATTTAATACCTTG
TTGTACGATAGCAAAAAAAGAATAGTACAAACGTTTATATACATAATACT
TTACTTGTAATGAAAAAAGCTTCAAAAACTAAAAGGTTATAGGGATATTA
TTTCAATTCTTTGAGCATGAATCTGTTTTAATTGACCACTAATTTGCAAG
TCTAAGCCAAGTCTTTGAAGATCAAATTCATGTTAAGTATGTTGTCAGGT
ATCAAATCAAGTCTCAAATTACAATTGTCTCATCAAAAATAAAGAATACT
TCTAAAATCATATTCATACGCGTTTAATAAACTATAGTCCAGAATTACGA
GCTCCTTCAAAAAATTAAATTACTCAGACTCCACAGACCAGGACTGCCAG
TGAACTTTTCAACAAAATCCCAGACGTAGCTATTTAAAACCCATGGCTAC
A
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