EMLSAG00000002227, EMLSAG00000002227-684993 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592848192|gb|GAXK01109352.1| (TSA: Calanus finmarchicus comp391896_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 3.099e-4 Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 0 Query: 231 ECLRLKEQNELLSSEIHDLRKQIKTEKYY---ENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALS 320 EC +L N L E L KQI K Y + E+E+L +L ME SRK YE AT +L+T LE V+ ++ + R T AEI LS Sbjct: 874 ECQQLYNDNIQLREEFKQL-KQISNPKKYLDLQKEIEHLHWQLNKMENSRKLYELATGQLVTFLEQVSSS--LSTSTSSRGSQNTLAEIGGLS 1143
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592864731|gb|GAXK01092831.1| (TSA: Calanus finmarchicus comp614127_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 2.072e-3 Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 0 Query: 229 IGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSP 303 I E R+K +NE+L ++ + + K ++E+E L +L ME+SR YE+AT +L + LE V+ L T P Sbjct: 2354 IDEFSRVKLENEILKLKLKSFNQDDEKYKKLQSEIEQLTWQLSKMEQSRLVYENATNQLGSFLEMVSTQLTLTKP 2578
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592932637|gb|GAXK01025916.1| (TSA: Calanus finmarchicus comp5369790_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 3.004e-3 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0 Query: 229 IGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVT 295 +GE +R+K +NE L ++ + + K E EV++L +L ME+SR YE AT +L + LE V+ Sbjct: 63 VGEFIRVKAENERLKMKMKTYNQGDQRYKKLELEVDHLTWQLSKMEQSRLVYEDATHQLGSFLELVS 263
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954423|gb|GAXK01004130.1| (TSA: Calanus finmarchicus comp254997_c0_seq6 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.774e+0 Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300 NEV+ L++ + ME S+ YE++T++L + LE L S Sbjct: 645 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 764
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954424|gb|GAXK01004129.1| (TSA: Calanus finmarchicus comp254997_c0_seq5 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.138e+0 Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300 NEV+ L++ + ME S+ YE++T++L + LE L S Sbjct: 733 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 852
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954426|gb|GAXK01004127.1| (TSA: Calanus finmarchicus comp254997_c0_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.824e+0 Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300 NEV+ L++ + ME S+ YE++T++L + LE L S Sbjct: 847 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 966
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592774271|gb|GAXK01180297.1| (TSA: Calanus finmarchicus comp1778016_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 5.224e+0 Identity = 24/88 (27.27%), Postives = 37/88 (42.05%), Query Frame = 0 Query: 118 HLAWMSATTFKRILDKQEEAELNCNSCG---------SRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSII 196 HL S + IL+K +L C+ C +R A+K P+D +CSE K++ L +EH+W V S + Sbjct: 483 HLVLKSCLRKEEILEKDGRGKLKCDDCHRSYADVNSLTRHIAWKHREPIDFKCSECKASF-----KLKSSLTKHKWQEHRWRTV*SSV 731
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592850250|gb|GAXK01107294.1| (TSA: Calanus finmarchicus comp36067_c2_seq5 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 8.104e+0 Identity = 27/132 (20.45%), Postives = 63/132 (47.73%), Query Frame = 0 Query: 266 LRNELKSMEKSRKAYESATVRL--ITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRT-----SRPSLKNPIKMKRSQSTS-------INPQINRPSLNESDQNDSSLPVQLDLS 383 L++ K +E+ R + E ++ + +L++ + S +P HQ+ +D AEI L+ +R +LK + T +R + ++++++Q + + + NR + +Q+ + QL++S Sbjct: 306 LKDFFKDIEEIRDSCEKVNTKVNEVKMLQNTILSSPSVNPKHQQQMDDLMAEIKKLAN----AVRSKLKKMEQETEQEEKARGQITGELRIRKTQHMTASRRFVEVMTEYNRIQVEYREQSKGKIARQLEIS 689
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592850253|gb|GAXK01107291.1| (TSA: Calanus finmarchicus comp36067_c2_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 8.403e+0 Identity = 27/132 (20.45%), Postives = 63/132 (47.73%), Query Frame = 0 Query: 266 LRNELKSMEKSRKAYESATVRL--ITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRT-----SRPSLKNPIKMKRSQSTS-------INPQINRPSLNESDQNDSSLPVQLDLS 383 L++ K +E+ R + E ++ + +L++ + S +P HQ+ +D AEI L+ +R +LK + T +R + ++++++Q + + + NR + +Q+ + QL++S Sbjct: 306 LKDFFKDIEEIRDSCEKVNTKVNEVKMLQNTILSSPSVNPKHQQQMDDLMAEIKKLAN----AVRSKLKKMEQETEQEEKARGQITGELRIRKTQHMTASRRFVEVMTEYNRIQVEYREQSKGKIARQLEIS 689
BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Match: EMLSAP00000002227 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:133862:135577:-1 gene:EMLSAG00000002227 transcript:EMLSAT00000002227 description:"augustus_masked-LSalAtl2s1421-processed-gene-0.3") HSP 1 Score: 1034.25 bits (2673), Expect = 0.000e+0 Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0 Query: 1 MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI 504 MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI Sbjct: 1 MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI 504
BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Match: EMLSAP00000005272 (pep:novel supercontig:LSalAtl2s:LSalAtl2s281:451771:456216:-1 gene:EMLSAG00000005272 transcript:EMLSAT00000005272 description:"augustus_masked-LSalAtl2s281-processed-gene-4.2") HSP 1 Score: 82.8037 bits (203), Expect = 5.681e-17 Identity = 99/361 (27.42%), Postives = 165/361 (45.71%), Query Frame = 0 Query: 231 ECLRLKEQNELLSSEIHDLRKQIKTEKY-------YENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKT-------GCGIRPELKCISNRTSRPSL----------------------------------KNPI-------KMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRND-PVFTSPL-PSSKS------KKYYENIEVFESLYKDTLSGQE--WNSMNKTANNDIS-----------------EETSPKIRFERRRSFKHSAAFKNKISNSTL------------ALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITP 497 E L+L+ ++S E D R++ ++ K E+E+L+ +LK++E SRK YESAT RL++ LE V++V+ +TSP+H++L++ TRAE++A+++KT + IS S PS+ +P+ K+KRSQST ++ P ++E + L L+RND P + P+ P S S +K E+I+V S +T + E + S T+ DI EE S + F+HS +N +S + +E+K+ + + HK++RS+K LA+EK+L+ITP Sbjct: 374 ELLKLRVDFNIVSEERDDFRRKYESLKIKLLSNDSQIKEIEHLKWQLKTLENSRKTYESATERLMSFLEQVSLVIQATSPAHKKLIESTRAEVSAITRKTRGRSYAYHSSAHSSQQAISRAESMPSVVHDRQGESPFGKKTSCSTTSGSMCSLNSSNGNLDDHPLSVMTLGRKIKRSQST--QSKMGLPIVDEEANSLVLNSSLLSLTRNDQPPSSXPIKPHSNSLKKSELRKKKEHIQVSTSSDNNTSTDSEGAYRSYTVTSEQDICRASKKVSAFFKKEDLIREELSKXVVXPSTPLFQHSQ--RNNMSCEGITTVDITPTVVPSGCEETKDDLRIKAHKMLRSMKCILAREKTLNITP 730
BLAST of EMLSAG00000002227 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold15_size728074-snap-gene-6.25 (protein:Tk08880 transcript:maker-scaffold15_size728074-snap-gene-6.25-mRNA-1 annotation:"unkown partial") HSP 1 Score: 75.8702 bits (185), Expect = 1.263e-14 Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 0 Query: 231 ECLRLKEQNELLSSEIHDLRKQIKTEKYYE--NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKT 323 EC RL E N L +I +L+ ++ E E+++L+ +L ME SRK YE AT RL+T L+ VT L +TSP+H++L+D T+ E++ +++KT Sbjct: 482 ECQRLLENNRELKDQIKELKLYSNPRRHLELEKEIDHLKWQLAQMESSRKTYELATARLVTFLDEVTSALQATSPAHRKLIDATKEEVSKVTKKT 576 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002227 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 9
BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000002227 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002227 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002227 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002227 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1421:133862..135577- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002227-684993 ID=EMLSAG00000002227-684993|Name=EMLSAG00000002227|organism=Lepeophtheirus salmonis|type=gene|length=1716bp|location=Sequence derived from alignment at LSalAtl2s1421:133862..135577- (Lepeophtheirus salmonis)back to top Add to Basket
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