EMLSAG00000002227, EMLSAG00000002227-684993 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002227
Unique NameEMLSAG00000002227-684993
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592848192|gb|GAXK01109352.1| (TSA: Calanus finmarchicus comp391896_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 3.099e-4
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 0
Query:  231 ECLRLKEQNELLSSEIHDLRKQIKTEKYY---ENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALS 320
            EC +L   N  L  E   L KQI   K Y   + E+E+L  +L  ME SRK YE AT +L+T LE V+     ++ +  R    T AEI  LS
Sbjct:  874 ECQQLYNDNIQLREEFKQL-KQISNPKKYLDLQKEIEHLHWQLNKMENSRKLYELATGQLVTFLEQVSSS--LSTSTSSRGSQNTLAEIGGLS 1143          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592864731|gb|GAXK01092831.1| (TSA: Calanus finmarchicus comp614127_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 2.072e-3
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 0
Query:  229 IGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSP 303
            I E  R+K +NE+L  ++    +  +  K  ++E+E L  +L  ME+SR  YE+AT +L + LE V+  L  T P
Sbjct: 2354 IDEFSRVKLENEILKLKLKSFNQDDEKYKKLQSEIEQLTWQLSKMEQSRLVYENATNQLGSFLEMVSTQLTLTKP 2578          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592932637|gb|GAXK01025916.1| (TSA: Calanus finmarchicus comp5369790_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 3.004e-3
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0
Query:  229 IGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVT 295
            +GE +R+K +NE L  ++    +  +  K  E EV++L  +L  ME+SR  YE AT +L + LE V+
Sbjct:   63 VGEFIRVKAENERLKMKMKTYNQGDQRYKKLELEVDHLTWQLSKMEQSRLVYEDATHQLGSFLELVS 263          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954423|gb|GAXK01004130.1| (TSA: Calanus finmarchicus comp254997_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.774e+0
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0
Query:  261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300
            NEV+ L++ +  ME S+  YE++T++L + LE     L S
Sbjct:  645 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 764          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954424|gb|GAXK01004129.1| (TSA: Calanus finmarchicus comp254997_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.138e+0
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0
Query:  261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300
            NEV+ L++ +  ME S+  YE++T++L + LE     L S
Sbjct:  733 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 852          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592954426|gb|GAXK01004127.1| (TSA: Calanus finmarchicus comp254997_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.824e+0
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 0
Query:  261 NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLS 300
            NEV+ L++ +  ME S+  YE++T++L + LE     L S
Sbjct:  847 NEVDRLKSVVNKMENSKTMYETSTMQLASFLETFATQLAS 966          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592774271|gb|GAXK01180297.1| (TSA: Calanus finmarchicus comp1778016_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.224e+0
Identity = 24/88 (27.27%), Postives = 37/88 (42.05%), Query Frame = 0
Query:  118 HLAWMSATTFKRILDKQEEAELNCNSCG---------SRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSII 196
            HL   S    + IL+K    +L C+ C          +R  A+K   P+D +CSE          K++  L     +EH+W  V S +
Sbjct:  483 HLVLKSCLRKEEILEKDGRGKLKCDDCHRSYADVNSLTRHIAWKHREPIDFKCSECKASF-----KLKSSLTKHKWQEHRWRTV*SSV 731          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592850250|gb|GAXK01107294.1| (TSA: Calanus finmarchicus comp36067_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 8.104e+0
Identity = 27/132 (20.45%), Postives = 63/132 (47.73%), Query Frame = 0
Query:  266 LRNELKSMEKSRKAYESATVRL--ITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRT-----SRPSLKNPIKMKRSQSTS-------INPQINRPSLNESDQNDSSLPVQLDLS 383
            L++  K +E+ R + E    ++  + +L++  +   S +P HQ+ +D   AEI  L+      +R +LK +   T     +R  +   ++++++Q  +       +  + NR  +   +Q+   +  QL++S
Sbjct:  306 LKDFFKDIEEIRDSCEKVNTKVNEVKMLQNTILSSPSVNPKHQQQMDDLMAEIKKLAN----AVRSKLKKMEQETEQEEKARGQITGELRIRKTQHMTASRRFVEVMTEYNRIQVEYREQSKGKIARQLEIS 689          
BLAST of EMLSAG00000002227 vs. C. finmarchicus
Match: gi|592850253|gb|GAXK01107291.1| (TSA: Calanus finmarchicus comp36067_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 8.403e+0
Identity = 27/132 (20.45%), Postives = 63/132 (47.73%), Query Frame = 0
Query:  266 LRNELKSMEKSRKAYESATVRL--ITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRT-----SRPSLKNPIKMKRSQSTS-------INPQINRPSLNESDQNDSSLPVQLDLS 383
            L++  K +E+ R + E    ++  + +L++  +   S +P HQ+ +D   AEI  L+      +R +LK +   T     +R  +   ++++++Q  +       +  + NR  +   +Q+   +  QL++S
Sbjct:  306 LKDFFKDIEEIRDSCEKVNTKVNEVKMLQNTILSSPSVNPKHQQQMDDLMAEIKKLAN----AVRSKLKKMEQETEQEEKARGQITGELRIRKTQHMTASRRFVEVMTEYNRIQVEYREQSKGKIARQLEIS 689          
BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Match: EMLSAP00000002227 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:133862:135577:-1 gene:EMLSAG00000002227 transcript:EMLSAT00000002227 description:"augustus_masked-LSalAtl2s1421-processed-gene-0.3")

HSP 1 Score: 1034.25 bits (2673), Expect = 0.000e+0
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0
Query:    1 MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI 504
            MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI
Sbjct:    1 MKRSSRRDMNKESLMKQRRWKSELIIAESPELVDVDSPSARFKSNYAKEVVQYVRHNKNLSGRHSHPGYVYKSQSELRIDDYPEERDQMYRSRSNCDLMSLARKNVHIQAELPSKDDHLAWMSATTFKRILDKQEEAELNCNSCGSRKAAYKKGMPVDKRCSENNVDLLKNMNKVRDILNLDVREEHQWTNVCSIIEQKKMLSPNSNGNNDIILSSQMVVRNENGNNYIGECLRLKEQNELLSSEIHDLRKQIKTEKYYENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKTGCGIRPELKCISNRTSRPSLKNPIKMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRNDPVFTSPLPSSKSKKYYENIEVFESLYKDTLSGQEWNSMNKTANNDISEETSPKIRFERRRSFKHSAAFKNKISNSTLALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITPHKKVENI 504          
BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Match: EMLSAP00000005272 (pep:novel supercontig:LSalAtl2s:LSalAtl2s281:451771:456216:-1 gene:EMLSAG00000005272 transcript:EMLSAT00000005272 description:"augustus_masked-LSalAtl2s281-processed-gene-4.2")

HSP 1 Score: 82.8037 bits (203), Expect = 5.681e-17
Identity = 99/361 (27.42%), Postives = 165/361 (45.71%), Query Frame = 0
Query:  231 ECLRLKEQNELLSSEIHDLRKQIKTEKY-------YENEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKT-------GCGIRPELKCISNRTSRPSL----------------------------------KNPI-------KMKRSQSTSINPQINRPSLNESDQNDSSLPVQLDLSRND-PVFTSPL-PSSKS------KKYYENIEVFESLYKDTLSGQE--WNSMNKTANNDIS-----------------EETSPKIRFERRRSFKHSAAFKNKISNSTL------------ALDESKNLGKPRTHKIMRSVKWFLAKEKSLSITP 497
            E L+L+    ++S E  D R++ ++ K           E+E+L+ +LK++E SRK YESAT RL++ LE V++V+ +TSP+H++L++ TRAE++A+++KT               + IS   S PS+                                   +P+       K+KRSQST    ++  P ++E   +       L L+RND P  + P+ P S S      +K  E+I+V  S   +T +  E  + S   T+  DI                  EE S  +       F+HS   +N +S   +              +E+K+  + + HK++RS+K  LA+EK+L+ITP
Sbjct:  374 ELLKLRVDFNIVSEERDDFRRKYESLKIKLLSNDSQIKEIEHLKWQLKTLENSRKTYESATERLMSFLEQVSLVIQATSPAHKKLIESTRAEVSAITRKTRGRSYAYHSSAHSSQQAISRAESMPSVVHDRQGESPFGKKTSCSTTSGSMCSLNSSNGNLDDHPLSVMTLGRKIKRSQST--QSKMGLPIVDEEANSLVLNSSLLSLTRNDQPPSSXPIKPHSNSLKKSELRKKKEHIQVSTSSDNNTSTDSEGAYRSYTVTSEQDICRASKKVSAFFKKEDLIREELSKXVVXPSTPLFQHSQ--RNNMSCEGITTVDITPTVVPSGCEETKDDLRIKAHKMLRSMKCILAREKTLNITP 730          
BLAST of EMLSAG00000002227 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold15_size728074-snap-gene-6.25 (protein:Tk08880 transcript:maker-scaffold15_size728074-snap-gene-6.25-mRNA-1 annotation:"unkown partial")

HSP 1 Score: 75.8702 bits (185), Expect = 1.263e-14
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 0
Query:  231 ECLRLKEQNELLSSEIHDLRKQIKTEKYYE--NEVENLRNELKSMEKSRKAYESATVRLITLLEHVTMVLLSTSPSHQRLVDRTRAEIAALSQKT 323
            EC RL E N  L  +I +L+      ++ E   E+++L+ +L  ME SRK YE AT RL+T L+ VT  L +TSP+H++L+D T+ E++ +++KT
Sbjct:  482 ECQRLLENNRELKDQIKELKLYSNPRRHLELEKEIDHLKWQLAQMESSRKTYELATARLVTFLDEVTSALQATSPAHRKLIDATKEEVSKVTKKT 576          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002227 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002227 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592848192|gb|GAXK01109352.1|3.099e-439.78TSA: Calanus finmarchicus comp391896_c0_seq1 trans... [more]
gi|592864731|gb|GAXK01092831.1|2.072e-336.00TSA: Calanus finmarchicus comp614127_c0_seq1 trans... [more]
gi|592932637|gb|GAXK01025916.1|3.004e-337.31TSA: Calanus finmarchicus comp5369790_c0_seq1 tran... [more]
gi|592954423|gb|GAXK01004130.1|2.774e+037.50TSA: Calanus finmarchicus comp254997_c0_seq6 trans... [more]
gi|592954424|gb|GAXK01004129.1|3.138e+037.50TSA: Calanus finmarchicus comp254997_c0_seq5 trans... [more]
gi|592954426|gb|GAXK01004127.1|3.824e+037.50TSA: Calanus finmarchicus comp254997_c0_seq3 trans... [more]
gi|592774271|gb|GAXK01180297.1|5.224e+027.27TSA: Calanus finmarchicus comp1778016_c0_seq1 tran... [more]
gi|592850250|gb|GAXK01107294.1|8.104e+020.45TSA: Calanus finmarchicus comp36067_c2_seq5 transc... [more]
gi|592850253|gb|GAXK01107291.1|8.403e+020.45TSA: Calanus finmarchicus comp36067_c2_seq2 transc... [more]
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BLAST of EMLSAG00000002227 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000022270.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:1338... [more]
EMLSAP000000052725.681e-1727.42pep:novel supercontig:LSalAtl2s:LSalAtl2s281:45177... [more]
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BLAST of EMLSAG00000002227 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002227 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002227 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002227 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold15_size728074-snap-gene-6.251.263e-1441.05protein:Tk08880 transcript:maker-scaffold15_size72... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1421supercontigLSalAtl2s1421:133862..135577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1421-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002227 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002227EMLSAT00000002227-698074Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1421:133862..135577-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002227-684993 ID=EMLSAG00000002227-684993|Name=EMLSAG00000002227|organism=Lepeophtheirus salmonis|type=gene|length=1716bp|location=Sequence derived from alignment at LSalAtl2s1421:133862..135577- (Lepeophtheirus salmonis)
ATGAAGCGAAGTTCTAGAAGAGATATGAATAAGGAGTCTCTTATGAAGCA GAGAAGATGGAAATCCGAGTTAATAATAGCAGAATCTCCCGAGCTAGTGG ATGTGGATTCCCCTTCTGCTAGATTTAAATCCAACTATGCCAAAGAAGTG GTACAATACGTTCGTCATAATAAAAATTTATCTGGTCGCCATAGTCATCC CGGATATGTTTATAAGTCTCAGAGTGAACTTCGGATTGATGTAAGCCATT GAAAAACCATTTCAGTTTTTTATTTTATTTCATTGATAATTATATTATTG ATCATTTTGATTTTCAGGACTATCCTGAAGAAAGGGATCAAATGTACAGA AGTAGAAGCAACTGTGACCTTATGTCTCTTGCTAGAAAAAATGTTCATAT TCAAGCAGAACTCCCAAGTAAGGACGATCATTTGGCTTGGATGTCTGCTA CAACGTTTAAGAGAATATTGGACAAACAAGAGGAAGCGGAGTTAAACTGC AATTCTTGTGGATCTCGTAAAGCAGCTTATAAAAAAGGAATGCCTGTAGA TAAACGGTGCTCGGAGAATAATGTTGACCTTTTGAAGAATATGAATAAGG TCAGAGATATTTTAAATTTGGATGTTAGGGAAGAACACCAGTGGACTAAT GTTTGCAGTATTATTGAACAAAAGAAAATGTTATCTCCCAATTCTAATGG GAACAATGATATAATTCTATCTAGTCAAATGGTTGTTAGAAATGAAAATG GTAATAATTACATAGGAGAATGTCTGAGATTGAAAGAACAAAACGAGCTT CTTTCTTCTGAAATTCATGATTTAAGAAAACAAATTAAAACTGAAAAGTA CTATGAAAATGAAGTTGAGAATTTGCGAAACGAGCTGAAGTCGGTAAGTT GATTATATATTTTGTAATAATTTTGTAATCGTTAAATATTTGTAATTGGA TTTCAGATGGAAAAAAGTCGGAAAGCGTATGAGTCAGCAACGGTTAGGTT AATTACGTTACTTGAGCATGTAACAATGGTCTTACTATCTACTTCTCCTT CACATCAACGTCTCGTAGATCGAACTCGTGCAGAAATTGCTGCCTTGTCT CAAAAAACAGGATGTGGGATTCGTCCTGAATTGAAATGTATATCTAACAG AACATCACGCCCTTCACTCAAAAATCCTATAAAAATGAAACGCTCTCAAT CAACTTCAATAAACCCTCAGATCAACCGCCCTTCATTGAACGAATCCGAT CAAAATGACTCTTCATTGCCTGTTCAATTAGACTTGAGTCGAAATGATCC TGTTTTCACATCACCCCTTCCTTCGTCAAAATCTAAGAAGTATTACGAAA ACATAGAAGTTTTTGAGAGTTTGTACAAAGACACTCTTAGTGGACAAGAA TGGAATTCTATGAACAAAACTGCTAACAATGACATAAGTGAAGAAACCAG TCCTAAAATTAGGTTTGAAAGGCGGAGATCCTTTAAACATAGGTATATTA ATTAAATAGTAGTTAAAAAAGATGGAACTAATTCGTTAAAATTGATTTCA CAGTGCTGCTTTCAAGAATAAGATTAGTAATTCGACATTAGCTTTGGACG AAAGTAAAAACTTGGGAAAGCCAAGAACACATAAAATTATGCGCTCAGTC AAATGGTTTTTAGCTAAAGAAAAATCTCTGAGTATTACTCCACATAAGAA AGTCGAAAATATTTGA
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