EMLSAG00000002244, EMLSAG00000002244-685010 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002244
Unique NameEMLSAG00000002244-685010
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002244 vs. C. finmarchicus
Match: gi|592903321|gb|GAXK01055054.1| (TSA: Calanus finmarchicus comp84110_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.987e+0
Identity = 11/28 (39.29%), Postives = 21/28 (75.00%), Query Frame = 0 
Query:    7 SSLSIQASDPLH-PVIISIGINPQISPN 33
            +S SIQ +DPLH  V+ ++ ++ Q++P+
Sbjct: 2184 ASASIQTADPLHTAVLAAVQLSTQVTPH 2267
[Close]
BLAST of EMLSAG00000002244 vs. C. finmarchicus
Match: gi|592903322|gb|GAXK01055053.1| (TSA: Calanus finmarchicus comp84110_c5_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.018e+0
Identity = 11/28 (39.29%), Postives = 21/28 (75.00%), Query Frame = 0 
Query:    7 SSLSIQASDPLH-PVIISIGINPQISPN 33
            +S SIQ +DPLH  V+ ++ ++ Q++P+
Sbjct: 2562 ASASIQTADPLHTAVLAAVQLSTQVTPH 2645
[Close]
BLAST of EMLSAG00000002244 vs. C. finmarchicus
Match: gi|592903323|gb|GAXK01055052.1| (TSA: Calanus finmarchicus comp84110_c5_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.049e+0
Identity = 11/28 (39.29%), Postives = 21/28 (75.00%), Query Frame = 0 
Query:    7 SSLSIQASDPLH-PVIISIGINPQISPN 33
            +S SIQ +DPLH  V+ ++ ++ Q++P+
Sbjct: 3053 ASASIQTADPLHTAVLAAVQLSTQVTPH 3136
[Close]
BLAST of EMLSAG00000002244 vs. C. finmarchicus
Match: gi|592903324|gb|GAXK01055051.1| (TSA: Calanus finmarchicus comp84110_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.053e+0
Identity = 11/28 (39.29%), Postives = 21/28 (75.00%), Query Frame = 0 
Query:    7 SSLSIQASDPLH-PVIISIGINPQISPN 33
            +S SIQ +DPLH  V+ ++ ++ Q++P+
Sbjct: 3141 ASASIQTADPLHTAVLAAVQLSTQVTPH 3224
[Close]
BLAST of EMLSAG00000002244 vs. L. salmonis peptides
Match: EMLSAP00000002244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1426:6799:7275:-1 gene:EMLSAG00000002244 transcript:EMLSAT00000002244 description:"maker-LSalAtl2s1426-snap-gene-0.16")

HSP 1 Score: 127.872 bits (320), Expect = 4.679e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MKPRVRSSLSIQASDPLHPVIISIGINPQISPNPSFCHGLLISGCCVRRIVLFGRSGRRRGIVGRL 66
            MKPRVRSSLSIQASDPLHPVIISIGINPQISPNPSFCHGLLISGCCVRRIVLFGRSGRRRGIVGRL
Sbjct:    1 MKPRVRSSLSIQASDPLHPVIISIGINPQISPNPSFCHGLLISGCCVRRIVLFGRSGRRRGIVGRL 66
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002244 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002244 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592903321|gb|GAXK01055054.1|6.987e+039.29TSA: Calanus finmarchicus comp84110_c5_seq5 transc... [more]
gi|592903322|gb|GAXK01055053.1|7.018e+039.29TSA: Calanus finmarchicus comp84110_c5_seq4 transc... [more]
gi|592903323|gb|GAXK01055052.1|7.049e+039.29TSA: Calanus finmarchicus comp84110_c5_seq3 transc... [more]
gi|592903324|gb|GAXK01055051.1|7.053e+039.29TSA: Calanus finmarchicus comp84110_c5_seq2 transc... [more]
back to top
BLAST of EMLSAG00000002244 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000022444.679e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1426:6799... [more]
back to top
BLAST of EMLSAG00000002244 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002244 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002244 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002244 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1426supercontigLSalAtl2s1426:6799..7275 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1426-snap-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002244 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002244EMLSAT00000002244-698091Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1426:6799..7275-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002244-685010 ID=EMLSAG00000002244-685010|Name=EMLSAG00000002244|organism=Lepeophtheirus salmonis|type=gene|length=477bp|location=Sequence derived from alignment at LSalAtl2s1426:6799..7275- (Lepeophtheirus salmonis)
ATGAAAGTAATANGTAATAATTATATTTTGGCAAGAGTTCAAGACTAAAT
TGAAGCGTGAGAGAGAGGTTGCGTGCGAGAGAAAGAGAGCGTTGACAATT
TGGCTATTGTTATTACCATTAAGGTATTTTATATTTATATAATATTTACT
TCTGATGAAGCTCTGAAATTTGTATAATAAATTTGTAAAGCCAAGGGTTC
GTTCATCGCTGAGTATTCAAGCGAGTGATCCTCTTCATCCAGTGATCATT
TCAATTGGTATCAATCCGCAGATTTCACCGAATCCGAGTTTCTGTCATGG
CGTTATTTGAATTTTCGAATCCTTTTAAATAATATACTTTGGTTGTCCTT
TAATTATTTCTTAATATTATAATAATTATTAACTAATTAGTAGTTATTGA
TATCTGGATGTTGTGTTCGTCGTATTGTTTTATTTGGTAGAAGTGGAAGA
AGAAGAGGAATTGTAGGAAGGCTCTAG
back to top
Add to Basket