EMLSAG00000002270, EMLSAG00000002270-685036 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592919619|gb|GAXK01038756.1| (TSA: Calanus finmarchicus comp4818162_c0_seq1 transcribed RNA sequence) HSP 1 Score: 49.2914 bits (116), Expect = 3.552e-8 Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0 Query: 24 SFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENA 63 S L++KYLC+Q +S PSER FS G + ++RN+LT E+ Sbjct: 187 SILARKYLCVQATSTPSERVFSKMGNVVSKKRNKLTPEHT 306
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592884520|gb|GAXK01073855.1| (TSA: Calanus finmarchicus comp4795922_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 1.162e-3 Identity = 19/49 (38.78%), Postives = 28/49 (57.14%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIMR 74 L++K L I SS SER FS+ G F+ ++RN+L + LI+ R Sbjct: 22 LAKKVLTIPASSSKSERVFSAGGNFVTKKRNKLAPKKEGDLILIKEKKR 168
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592839002|gb|GAXK01118542.1| (TSA: Calanus finmarchicus comp5970500_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 1.808e-3 Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIM 73 L++KYLC+ +S +ER FS+ G + +RR LT + NN+M Sbjct: 16 LARKYLCVPATSTQAERVFSALGWLLNKRRLLLTGSH------VNNLM 141
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592752874|gb|GAXK01201539.1| (TSA: Calanus finmarchicus comp4505367_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 2.244e-3 Identity = 17/46 (36.96%), Postives = 28/46 (60.87%), Query Frame = 0 Query: 24 SFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVF 69 S L++K L + SS SER FS+ G F+ +RN++ + + LI+ Sbjct: 281 SKLAKKVLTVPASSSKSERVFSTGGNFVTSKRNKIAPKKVEDLILI 418
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592759871|gb|GAXK01194542.1| (TSA: Calanus finmarchicus comp5147365_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 5.296e-3 Identity = 15/44 (34.09%), Postives = 26/44 (59.09%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVF 69 ++++ L I SS SER FS+ G + +RN+L + + LI+ Sbjct: 256 IAKRVLAIPASSAKSERVFSTGGNMVTAKRNRLAPKKVEALILI 387
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592898349|gb|GAXK01060026.1| (TSA: Calanus finmarchicus comp4749793_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.702e-2 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIV 68 ++K L I SS SER FS+ G F+ +R +L + Q LIV Sbjct: 763 FARKVLAIPVSSGKSERVFSTGGNFVTAKRTRLNAQKVQALIV 891
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592765800|gb|GAXK01188768.1| (TSA: Calanus finmarchicus comp327525_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.706e-2 Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 0 Query: 24 SFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIV 68 S L++K L + SS SER FS G F+ +RN+L + + LI+ Sbjct: 436 SKLAKKVLTVPASSSKSERVFSCGGNFVTPKRNKLGAKKVEELIL 570
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592883628|gb|GAXK01074747.1| (TSA: Calanus finmarchicus comp3869350_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.346e-1 Identity = 15/47 (31.91%), Postives = 26/47 (55.32%), Query Frame = 0 Query: 24 SFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 S L + +Q +S SER FS AG + +RN+++ E + L++ Sbjct: 105 SHLVRVVFSVQAASSKSERIFSEAGQVLTPKRNRMSPEKLEDLLIIK 245
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592945465|gb|GAXK01013088.1| (TSA: Calanus finmarchicus comp2491288_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.610e-1 Identity = 14/34 (41.18%), Postives = 22/34 (64.71%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLT 59 L+++ L I SS SER FS+ G + +RN+L+ Sbjct: 1709 LAKRILTIPASSSKSERVFSTGGNIVTAKRNRLS 1810
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Match: gi|592880106|gb|GAXK01077795.1| (TSA: Calanus finmarchicus comp7901917_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.908e-1 Identity = 16/43 (37.21%), Postives = 24/43 (55.81%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIV 68 L++ L + SS SER FS G F +R++L + + LIV Sbjct: 94 LAKNVLTVPASSSKSERVFSCGGNFATAKRSKLDPKKIENLIV 222
BLAST of EMLSAG00000002270 vs. L. salmonis peptides
Match: EMLSAP00000002270 (pep:novel supercontig:LSalAtl2s:LSalAtl2s142:304495:321444:1 gene:EMLSAG00000002270 transcript:EMLSAT00000002270 description:"snap_masked-LSalAtl2s142-processed-gene-3.0") HSP 1 Score: 169.088 bits (427), Expect = 9.315e-56 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 Query: 1 MELILKSCVSKFTFILKMIMIKDSFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIMREAYPEDPY 82 MELILKSCVSKFTFILKMIMIKDSFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIMREAYPEDPY Sbjct: 1 MELILKSCVSKFTFILKMIMIKDSFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIMREAYPEDPY 82
BLAST of EMLSAG00000002270 vs. Select Arthropod Genomes
Match: EFX64327.1 (hypothetical protein DAPPUDRAFT_66295 [Daphnia pulex]) HSP 1 Score: 45.4394 bits (106), Expect = 4.195e-7 Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0 Query: 29 KYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 K+ CI +SVP E+ FSSAG + + RN+L+ +N ML+ N Sbjct: 39 KFQCIPATSVPCEQLFSSAGELVSEERNRLSPDNVNMLLFLN 80
BLAST of EMLSAG00000002270 vs. nr
Match: gi|761920754|ref|XP_011409266.1| (PREDICTED: zinc finger BED domain-containing protein 1-like, partial [Amphimedon queenslandica]) HSP 1 Score: 56.225 bits (134), Expect = 3.350e-8 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIM 73 ++++YLC+ +SVPSER FS+AGL I +R+ LT ENA MLI + M Sbjct: 92 IARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFLSKNM 139
BLAST of EMLSAG00000002270 vs. nr
Match: gi|557332569|ref|XP_006039079.1| (PREDICTED: zinc finger BED domain-containing protein 1-like isoform X1 [Alligator sinensis]) HSP 1 Score: 58.151 bits (139), Expect = 4.354e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 830 LAKSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 874
BLAST of EMLSAG00000002270 vs. nr
Match: gi|1011577082|gb|KYO28673.1| (hypothetical protein Y1Q_0000834 [Alligator mississippiensis]) HSP 1 Score: 58.151 bits (139), Expect = 4.963e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 2385 LARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 2429
BLAST of EMLSAG00000002270 vs. nr
Match: gi|1011577080|gb|KYO28671.1| (hypothetical protein Y1Q_0000834 [Alligator mississippiensis]) HSP 1 Score: 58.151 bits (139), Expect = 4.963e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 2388 LARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 2432
BLAST of EMLSAG00000002270 vs. nr
Match: gi|1011577081|gb|KYO28672.1| (hypothetical protein Y1Q_0000834 [Alligator mississippiensis]) HSP 1 Score: 58.151 bits (139), Expect = 5.011e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 2387 LARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 2431
BLAST of EMLSAG00000002270 vs. nr
Match: gi|944364202|ref|XP_014383029.1| (PREDICTED: zinc finger BED domain-containing protein 1-like isoform X2 [Alligator sinensis]) HSP 1 Score: 57.7658 bits (138), Expect = 5.934e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 770 LAKSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 814
BLAST of EMLSAG00000002270 vs. nr
Match: gi|951025482|ref|XP_014461102.1| (PREDICTED: zinc finger BED domain-containing protein 1 [Alligator mississippiensis]) HSP 1 Score: 57.7658 bits (138), Expect = 6.543e-8 Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L++ YLCI GSSVP+ER FS+AGL + Q R++LT E+ MLI N Sbjct: 770 LARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLN 814
BLAST of EMLSAG00000002270 vs. nr
Match: gi|340384168|ref|XP_003390586.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Amphimedon queenslandica]) HSP 1 Score: 56.9954 bits (136), Expect = 1.229e-7 Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFN 70 L+++YLCI GSSVPSER FS AG+ + +RRN+++ +N +++ N Sbjct: 558 LARRYLCIPGSSVPSERLFSQAGVLVSERRNRISPKNVDIILFLN 602
BLAST of EMLSAG00000002270 vs. nr
Match: gi|340379785|ref|XP_003388406.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Amphimedon queenslandica]) HSP 1 Score: 56.225 bits (134), Expect = 2.272e-7 Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 0 Query: 24 SFLSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIMR 74 S ++ KYLCI GSSVPSER FS AG + +RRN++ +N M++ N+ ++ Sbjct: 545 SKIAAKYLCIPGSSVPSERLFSKAGQLVSERRNRIKPKNIDMILFLNHNIK 595
BLAST of EMLSAG00000002270 vs. nr
Match: gi|340385071|ref|XP_003391034.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Amphimedon queenslandica]) HSP 1 Score: 55.8398 bits (133), Expect = 2.528e-7 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 Query: 26 LSQKYLCIQGSSVPSERFFSSAGLFIPQRRNQLTDENAQMLIVFNNIM 73 ++++YLC+ +SVPSER FS+AGL I +R+ LT ENA MLI + M Sbjct: 545 IARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFLSKNM 592 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002270 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002270 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000002270 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000002270 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002270 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000002270 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 11
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BLAST of EMLSAG00000002270 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s142:304495..321444+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002270-685036 ID=EMLSAG00000002270-685036|Name=EMLSAG00000002270|organism=Lepeophtheirus salmonis|type=gene|length=16950bp|location=Sequence derived from alignment at LSalAtl2s142:304495..321444+ (Lepeophtheirus salmonis)back to top Add to Basket
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