EMLSAG00000002693, EMLSAG00000002693-685459 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002693
Unique NameEMLSAG00000002693-685459
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002693 vs. C. finmarchicus
Match: gi|592954819|gb|GAXK01003734.1| (TSA: Calanus finmarchicus comp454321_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.905e-1
Identity = 16/41 (39.02%), Postives = 23/41 (56.10%), Query Frame = 0 
Query:   29 IPPVDYFEDTYIAAFNFMVD-----VFLIFKRLTCLSSVHT 64
            +  V YF D +   F F++      +FL+F  LTC SSVH+
Sbjct:  468 LSSVKYFSDAF---FEFLISSGIFSIFLLFSNLTCSSSVHS 581
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BLAST of EMLSAG00000002693 vs. C. finmarchicus
Match: gi|592954821|gb|GAXK01003732.1| (TSA: Calanus finmarchicus comp454321_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.254e-1
Identity = 16/41 (39.02%), Postives = 23/41 (56.10%), Query Frame = 0 
Query:   29 IPPVDYFEDTYIAAFNFMVD-----VFLIFKRLTCLSSVHT 64
            +  V YF D +   F F++      +FL+F  LTC SSVH+
Sbjct:  468 LSSVKYFSDAF---FEFLISSGIFSIFLLFSNLTCSSSVHS 581
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BLAST of EMLSAG00000002693 vs. L. salmonis peptides
Match: EMLSAP00000002693 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1554:9036:9634:-1 gene:EMLSAG00000002693 transcript:EMLSAT00000002693 description:"snap_masked-LSalAtl2s1554-processed-gene-0.4")

HSP 1 Score: 187.963 bits (476), Expect = 7.823e-63
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 
Query:    1 MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIAAFNFMVDVFLIFKRLTCLSSVHTNEISYETRNLTLTHKNPGSSANVAELNT 92
            MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIAAFNFMVDVFLIFKRLTCLSSVHTNEISYETRNLTLTHKNPGSSANVAELNT
Sbjct:    1 MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIAAFNFMVDVFLIFKRLTCLSSVHTNEISYETRNLTLTHKNPGSSANVAELNT 92
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BLAST of EMLSAG00000002693 vs. L. salmonis peptides
Match: EMLSAP00000001541 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:105991:106672:-1 gene:EMLSAG00000001541 transcript:EMLSAT00000001541 description:"snap_masked-LSalAtl2s1269-processed-gene-0.7")

HSP 1 Score: 86.2705 bits (212), Expect = 5.149e-23
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0 
Query:    1 MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIAAFNFMVDVFLIFK-RLTCLSSVH-TNEISYETRNLTLTHKNPGSSANVAELNT 92
            ML   AFIPP E IEAFEI+Y+VM EI IP VDYF+D YI      +  FLIFK  L  L S    + +S    N +LTHKNPGSSANV +LNT
Sbjct:    1 MLTGFAFIPPGEVIEAFEILYNVMTEISIPVVDYFKDAYIGPLQ--LHGFLIFKYSLASLQSTQMKSAMSLGIFN-SLTHKNPGSSANVEKLNT 91
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BLAST of EMLSAG00000002693 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3")

HSP 1 Score: 51.9878 bits (123), Expect = 1.829e-9
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0 
Query:    1 MLKALAFIPPEEGIEAFEIIYSVMPEILIPPVDYFEDTYIA 41
            ML A+AF+P ++ IE FE +   MP+I  P +DYFEDTYI 
Sbjct:  128 MLSAIAFVPVDQTIEVFEALSETMPDIGQPIIDYFEDTYIG 168
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002693 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002693 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592954819|gb|GAXK01003734.1|3.905e-139.02TSA: Calanus finmarchicus comp454321_c1_seq3 trans... [more]
gi|592954821|gb|GAXK01003732.1|4.254e-139.02TSA: Calanus finmarchicus comp454321_c1_seq1 trans... [more]
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BLAST of EMLSAG00000002693 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000026937.823e-63100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1554:9036... [more]
EMLSAP000000015415.149e-2356.38pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:1059... [more]
EMLSAP000000055471.829e-953.66pep:novel supercontig:LSalAtl2s:LSalAtl2s297:42429... [more]
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BLAST of EMLSAG00000002693 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002693 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002693 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002693 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1554supercontigLSalAtl2s1554:9036..9634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1554-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002693 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002693EMLSAT00000002693-698540Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1554:9036..9634-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002693-685459 ID=EMLSAG00000002693-685459|Name=EMLSAG00000002693|organism=Lepeophtheirus salmonis|type=gene|length=599bp|location=Sequence derived from alignment at LSalAtl2s1554:9036..9634- (Lepeophtheirus salmonis)
ATGCTAAAGGCTTTGGCTTTCATACCACCAGAGGAAGGCATTGAGGCATT
TGAAATTATTTACAGTGTTATGCCCGAAATATTAATCCCACCGGTTGATT
ACTTCGAAGATACATACATTGCCGCCTTCAACTTCATGGTCGATGTCAGC
CCTCTTTTCCAATATTGATGTGGAACGTCCGAGACCGAATTGATGATCGT
CTGCCTTGTACAAATAAACACGTTGAAGGATGGCACAATATTGCTAATAT
GATGGCTGGGGACGGGCCGCCTCCTCAAGGGCGAAAATACAAATCAATTA
ATATAAGATTTAAAAACATTGTCAAAATTATAATAATTTAACTAAAATTA
GAACTTTTAAGAGGCGTAGCTCTCAACATCCAGTTATAAATTTTATATTA
TGTCCATTTCTATTTTTTGTAGAATAAATTAGTATTTTTCACATTTTATT
GCTTCATATTTTAGGTTTTTTTAATATTTAAAAGACTCACTTGTCTCTCT
TCAGTCCACACAAATGAAATCAGCTATGAGACTAGGAATCTTACTTTGAC
TCACAAAAACCCAGGTAGTTCAGCTAATGTTGCAGAATTGAACACTTGA
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