EMLSAG00000002694, EMLSAG00000002694-685460 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002694
Unique NameEMLSAG00000002694-685460
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002694 vs. C. finmarchicus
Match: gi|592926637|gb|GAXK01031811.1| (TSA: Calanus finmarchicus comp21153_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.494e-2
Identity = 27/98 (27.55%), Postives = 47/98 (47.96%), Query Frame = 0 
Query:   32 DSYHFEWY------DEDNTPITKDSYSGIEFIEKSFVG-GLVLKIRRPKAMSTYKCKVTDVRTGLFSIKSVNV----STALQEDVCEPMESGSLSWPR 118
            ++Y F W       + D+ PI  D    +E +E   +  GL++++ + K  ++Y CKVT+  +   S K V V       + ++ C P E   + WPR
Sbjct:  461 NNYTFSWEKKALGSNSDSKPI--DPEKSVETVEPLILPRGLLIRLDKIKESASYVCKVTN--SNRVSRKEVKVYLLPKNQINKETCHPTEDHMVIWPR 742
[Close]
BLAST of EMLSAG00000002694 vs. C. finmarchicus
Match: gi|592926638|gb|GAXK01031810.1| (TSA: Calanus finmarchicus comp21153_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.527e-2
Identity = 27/98 (27.55%), Postives = 47/98 (47.96%), Query Frame = 0 
Query:   32 DSYHFEW------YDEDNTPITKDSYSGIEFIEKSFVG-GLVLKIRRPKAMSTYKCKVTDVRTGLFSIKSVNV----STALQEDVCEPMESGSLSWPR 118
            ++Y F W       + D+ PI  D    +E +E   +  GL++++ + K  ++Y CKVT+  +   S K V V       + ++ C P E   + WPR
Sbjct:  544 NNYTFSWEKKALGSNSDSKPI--DPEKSVETVEPLILPRGLLIRLDKIKESASYVCKVTN--SNRVSRKEVKVYLLPKNQINKETCHPTEDHMVIWPR 825
[Close]
BLAST of EMLSAG00000002694 vs. C. finmarchicus
Match: gi|592915456|gb|GAXK01042919.1| (TSA: Calanus finmarchicus comp1317279_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.107e+0
Identity = 18/46 (39.13%), Postives = 22/46 (47.83%), Query Frame = 0 
Query:   67 LKIRRPKAMSTYK-CKVTDVRTGLFSIKSVNVSTALQEDVCEPMES 111
            LK  +P+ + TYK C V  +       KSVN  T      C PMES
Sbjct:  398 LKCTKPEYLGTYKKCTVDGMVQSTSCFKSVNTKTGEVNKGCAPMES 535
[Close]
BLAST of EMLSAG00000002694 vs. C. finmarchicus
Match: gi|592773963|gb|GAXK01180605.1| (TSA: Calanus finmarchicus comp4387227_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.225e+0
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 0 
Query:   40 DEDNTPITKDSYSGIEFIEKSFV 62
             E  TP+TKD YSGI  ++ S +
Sbjct:  112 SESTTPLTKDRYSGIRSLQSSMM 180
[Close]
BLAST of EMLSAG00000002694 vs. L. salmonis peptides
Match: EMLSAP00000002694 (pep:novel supercontig:LSalAtl2s:LSalAtl2s15568:168:668:1 gene:EMLSAG00000002694 transcript:EMLSAT00000002694 description:"maker-LSalAtl2s15568-augustus-gene-0.2")

HSP 1 Score: 256.914 bits (655), Expect = 4.921e-89
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 QSISSNEVFRSTESFYCKIRGNSRKILPIDLDSYHFEWYDEDNTPITKDSYSGIEFIEKSFVGGLVLKIRRPKAMSTYKCKVTDVRTGLFSIKSVNVSTALQEDVCEPMESGSLSWPRILRVISY 125
            QSISSNEVFRSTESFYCKIRGNSRKILPIDLDSYHFEWYDEDNTPITKDSYSGIEFIEKSFVGGLVLKIRRPKAMSTYKCKVTDVRTGLFSIKSVNVSTALQEDVCEPMESGSLSWPRILRVISY
Sbjct:    1 QSISSNEVFRSTESFYCKIRGNSRKILPIDLDSYHFEWYDEDNTPITKDSYSGIEFIEKSFVGGLVLKIRRPKAMSTYKCKVTDVRTGLFSIKSVNVSTALQEDVCEPMESGSLSWPRILRVISY 125
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002694 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002694 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592926637|gb|GAXK01031811.1|1.494e-227.55TSA: Calanus finmarchicus comp21153_c1_seq2 transc... [more]
gi|592926638|gb|GAXK01031810.1|1.527e-227.55TSA: Calanus finmarchicus comp21153_c1_seq1 transc... [more]
gi|592915456|gb|GAXK01042919.1|1.107e+039.13TSA: Calanus finmarchicus comp1317279_c0_seq1 tran... [more]
gi|592773963|gb|GAXK01180605.1|2.225e+047.83TSA: Calanus finmarchicus comp4387227_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000002694 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000026944.921e-89100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s15568:168... [more]
back to top
BLAST of EMLSAG00000002694 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002694 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002694 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002694 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s15568supercontigLSalAtl2s15568:168..668 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s15568-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002694 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002694EMLSAT00000002694-698541Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s15568:168..668+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002694-685460 ID=EMLSAG00000002694-685460|Name=EMLSAG00000002694|organism=Lepeophtheirus salmonis|type=gene|length=501bp|location=Sequence derived from alignment at LSalAtl2s15568:168..668+ (Lepeophtheirus salmonis)
CAGAGCATATCAAGTAATGAAGTCTTTCGGAGCACTGAGAGTTTTTATTG
TAAAATCCGTGGCAATTCTCGGAAGATTTTACCAATAGATTTGGACAGCT
ACCATTTTGAATGGTATGACGAGGATAATACTCCAATAACGAAAGACTCC
TATTCTGGTATTGAATTTATTGAAAAATCCTTTGTTGGAGGTTTAGTGTT
GAAAATCCGAAGGCCTAAGGTAATACTGGATTTTTATTCAACTTTTTAAT
TATACGGAGTGTAATTCACTTAATGTATCTTCTCTTAGGCTATGAGTACG
TATAAATGTAAAGTTACGGATGTTCGAACGGGTTTATTTTCAATTAAAAG
CGTAAATGTGAGTACTGCACTACAAGAAGATGTATGTGAACCCATGGAGT
CAGGATCCCTAAGTTGGCCACGAATTTTAAGAGTAATTTCGTATTAAATA
ATTCAAGTAAAGACAATGCAAAGTAGGATAATATATTTATCTAAATCATA
T
back to top
Add to Basket