EMLSAG00000002695, EMLSAG00000002695-685461 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002695
Unique NameEMLSAG00000002695-685461
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002695 vs. C. finmarchicus
Match: gi|592903541|gb|GAXK01054834.1| (TSA: Calanus finmarchicus comp5301847_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.927e+0
Identity = 18/52 (34.62%), Postives = 31/52 (59.62%), Query Frame = 0 
Query:   14 DDQN--LNVHNKFTSSPTKTILGTLTPGLVSRDLIIPKKNMILMQDYKTSIP 63
            D QN  L + ++FT S    I+   +PG+V+R++  PKK ++ ++DY    P
Sbjct:  133 DKQNVLLCLKSRFTWSICSQIMDDESPGIVARNM--PKK-IVDLKDYSNKNP 279
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BLAST of EMLSAG00000002695 vs. C. finmarchicus
Match: gi|592811849|gb|GAXK01142719.1| (TSA: Calanus finmarchicus comp2166939_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.519e+0
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   19 NVHNKFTSSPTKTILGTLTPGLVSRDLII 47
            N H+ FT   T   LGT+T  L+SR L+I
Sbjct:  183 NTHSHFTIYKTNPCLGTMTSDLLSRRLVI 269
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BLAST of EMLSAG00000002695 vs. C. finmarchicus
Match: gi|592898367|gb|GAXK01060008.1| (TSA: Calanus finmarchicus comp756606_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 6.858e+0
Identity = 14/41 (34.15%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   15 DQNLNVHNK------FTSSPTKTILGTLTPGLVSRDLIIPK 49
            D+N N+ NK         SPTK+I+     G + +D ++PK
Sbjct:  162 DKNGNIINKNVFVTTTKESPTKSIVNNDIKGPIKKDEVVPK 284
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BLAST of EMLSAG00000002695 vs. L. salmonis peptides
Match: EMLSAP00000002695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1556:11142:12442:-1 gene:EMLSAG00000002695 transcript:EMLSAT00000002695 description:"maker-LSalAtl2s1556-snap-gene-0.3")

HSP 1 Score: 135.191 bits (339), Expect = 7.503e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MHMMHKAFQDRVEDDQNLNVHNKFTSSPTKTILGTLTPGLVSRDLIIPKKNMILMQDYKTSIPQK 65
            MHMMHKAFQDRVEDDQNLNVHNKFTSSPTKTILGTLTPGLVSRDLIIPKKNMILMQDYKTSIPQK
Sbjct:    1 MHMMHKAFQDRVEDDQNLNVHNKFTSSPTKTILGTLTPGLVSRDLIIPKKNMILMQDYKTSIPQK 65
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BLAST of EMLSAG00000002695 vs. L. salmonis peptides
Match: EMLSAP00000002421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s145:843963:845296:-1 gene:EMLSAG00000002421 transcript:EMLSAT00000002421 description:"maker-LSalAtl2s145-augustus-gene-9.6")

HSP 1 Score: 100.908 bits (250), Expect = 2.523e-28
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    3 MMHKAFQDRVEDDQNLNVHNKFTSSPTKTILGTLTPGLVSRDLIIPKKNMILMQDYKTSIPQ 64
            MM+KAFQDRV DDQNL++HNKFTSSPTKTILG LTP  VSRD IIPKKNM  +Q YKTSIP+
Sbjct:    1 MMYKAFQDRVGDDQNLDIHNKFTSSPTKTILGALTPRSVSRDPIIPKKNMTHIQTYKTSIPE 62
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002695 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002695 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592903541|gb|GAXK01054834.1|1.927e+034.62TSA: Calanus finmarchicus comp5301847_c0_seq1 tran... [more]
gi|592811849|gb|GAXK01142719.1|2.519e+048.28TSA: Calanus finmarchicus comp2166939_c0_seq1 tran... [more]
gi|592898367|gb|GAXK01060008.1|6.858e+034.15TSA: Calanus finmarchicus comp756606_c0_seq1 trans... [more]
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BLAST of EMLSAG00000002695 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000026957.503e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1556:1114... [more]
EMLSAP000000024212.523e-2879.03pep:novel supercontig:LSalAtl2s:LSalAtl2s145:84396... [more]
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BLAST of EMLSAG00000002695 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002695 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002695 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002695 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1556supercontigLSalAtl2s1556:11142..12442 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1556-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002695 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002695EMLSAT00000002695-698542Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1556:11142..12442-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002695-685461 ID=EMLSAG00000002695-685461|Name=EMLSAG00000002695|organism=Lepeophtheirus salmonis|type=gene|length=1301bp|location=Sequence derived from alignment at LSalAtl2s1556:11142..12442- (Lepeophtheirus salmonis)
ATGCATATGATGCACAAAGCATTTCAAGATCGAGTGGAAGATGATCAGAA
CTTGAATGTACACAATAAGTTCACATCAAGTCCTACCAAAACCATCTTGG
GTACATTAACTCCTGGATTAGTCTCTAGAGATCTAATCATTCCAAAAAAA
AATATGATCCTCATGCAAGACTATAAAACCAGCATTCCCCAAGTAAGTTT
TACAAATTAATAATACCTACTGAAAACGTGTATTTACGATGCTGGTAAAA
AAAATTTCAAGCTTACGTTTTTAAATTGGATCAAAATAATATATAATTGA
GCCGAATATGAAATTATTTATAAAATTAATTTATGTCCAAAGAATTATGT
CCAAAATTTATGTATGCCTCAGAAAAGGAATTTTATTCGTATGAATGATA
TTATTATATAAATTTTTATACAGTCACAATGCATACCTCAACAAAATTTA
AAAATAGGTGTTGTTTGTGATACATAATGAAAAAGGTGGCTGGAAAACGG
TATAATTGTTTATTCTTCAAGCCGAAATTATTGACCGATAAAATACCGGA
AATATTTTTAATATATCTATGGAACATTGTCCAAGGTTATTAAATTATAT
GTCAAAGTGTTTCAAAAATATAGAGGACAATAAGAAACAAATTATTAGAT
ACGTCTTTTTTGGATAAAAAGTAGACATTTTATTTTGTTGATACTTTGTA
TAACTTTTGTTTGAAAAACAAGCAGCATATACAGTCAACATTTTTTATTC
TCATTGATCAAGTATCCTTTCATTTATAAACTCTGTGTGAATATAATTAC
GTTATAATTGATGTCTCAGTCACACAACTATATACCGCTATTACTCAAGT
TATATTTTAATTATGTACAATTATCAGATCTCTTTATCAAATGTCGTCAC
CATAAATTATAAAAATGTAGGAAAATGAACTTAACACATGGAAATAGACA
TAAAAAGAACGTCTAACCAGTTTATGTTTAATTGTAATTATAATTAACTT
CTCTTCACATGATTAAAAAAATACCAATGTTAACATAATTTAATCTAATT
GAACATAGTTTGAAACCTTTTGCCATCACTGCAGTACACATTATGTATAA
TGTGGAAAGACTAATTATTATTTCAATTATTTAGCATATTGAAGAAATAC
CGTTCTGAAGACAGGATAAACGTATACTTTATGCAAGAAAGAAAAGAGTT
GTAGACCYTATGCTCATCATACTTTTGAATGCCATAGGACTGTTTATATT
AATTATGGGCCTAGTTTTCTTTGTACTTTAATTTTTATTTAATAGAAGTA
A
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