EMLSAG00000002743, EMLSAG00000002743-685509 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002743
Unique NameEMLSAG00000002743-685509
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592759871|gb|GAXK01194542.1| (TSA: Calanus finmarchicus comp5147365_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.986e-6
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 0 
Query:    9 LELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSR 72
            L   K H++  P      K+ L  PA S KSE +F+ GG++ + + NRL     E LILI+ ++
Sbjct:  208 LSWWKQHENVLPLLAKIAKRVLAIPASSAKSERVFSTGGNMVTAKRNRLAPKKVEALILIKENK 399
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592883628|gb|GAXK01074747.1| (TSA: Calanus finmarchicus comp3869350_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 3.864e-6
Identity = 20/68 (29.41%), Postives = 37/68 (54.41%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIE 69
            ++Q  + L+  +IHQ  FP      +      A S KSE +F+  G + +P+ NR++ +  E L++I+
Sbjct:   42 LEQGVDQLDWWRIHQEQFPLLSHLVRVVFSVQAASSKSERIFSEAGQVLTPKRNRMSPEKLEDLLIIK 245
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592765800|gb|GAXK01188768.1| (TSA: Calanus finmarchicus comp327525_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 6.603e-6
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0 
Query:    9 LELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSR----EYSGKG 78
            L+  + H++  P      KK L  PA S KSE +F+ GG+  +P+ N+L A   E LILI+ ++    E+  +G
Sbjct:  391 LQWWRSHENVLPILSKLAKKVLTVPASSSKSERVFSCGGNFVTPKRNKLGAKKVEELILIKENKSQIEEFKNRG 612
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592919619|gb|GAXK01038756.1| (TSA: Calanus finmarchicus comp4818162_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.141e-5
Identity = 21/58 (36.21%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:    2 IKQENNPL-ELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLT 58
            +K++++PL E  K   S++P      +KYLC  A S  SE +F+  G++ S + N+LT
Sbjct:  121 LKEDSDPLLEFWKQKASNYPRLSILARKYLCVQATSTPSERVFSKMGNVVSKKRNKLT 294
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592941804|gb|GAXK01016749.1| (TSA: Calanus finmarchicus comp2817258_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 6.570e-5
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 0 
Query:   13 KIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSRE 73
            K+H++  P      ++ L  P+ S KSE +F+VGG++ + +  RL A   E LI+I+ + E
Sbjct: 1662 KVHEAVLPLLSKLARRVLAVPSSSAKSERVFSVGGNLVTAKRGRLAASKVEDLIVIKENLE 1844
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592898349|gb|GAXK01060026.1| (TSA: Calanus finmarchicus comp4749793_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 6.971e-5
Identity = 23/70 (32.86%), Postives = 37/70 (52.86%), Query Frame = 0 
Query:    4 QENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSRE 73
            +E N L   K H+ + P      +K L  P  S KSE +F+ GG+  + +  RL A   + LI+I+ +R+
Sbjct:  700 KEANVLSWWKDHEQTLPNLAQFARKVLAIPVSSGKSERVFSTGGNFVTAKRTRLNAQKVQALIVIKENRK 909
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592752874|gb|GAXK01201539.1| (TSA: Calanus finmarchicus comp4505367_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.218e-4
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 0 
Query:    7 NPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSR 72
            N L   + H+   P      KK L  PA S KSE +F+ GG+  + + N++     E LILI+ ++
Sbjct:  233 NILHWWRDHEKVLPLLSKLAKKVLTVPASSSKSERVFSTGGNFVTSKRNKIAPKKVEDLILIKENK 430
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592884520|gb|GAXK01073855.1| (TSA: Calanus finmarchicus comp4795922_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.410e-4
Identity = 22/67 (32.84%), Postives = 35/67 (52.24%), Query Frame = 0 
Query:    7 NPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLT-ADTGEMLILIEYSR 72
            N L+  K H+   P      KK L  PA S KSE +F+ GG+  + + N+L     G+++++ E  R
Sbjct:   22 NILKWWKDHEKILPLLAKLAKKVLTIPASSSKSERVFSAGGNFVTKKRNKLAPKKEGDLILIKEKKR 222
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592901190|gb|GAXK01057185.1| (TSA: Calanus finmarchicus comp5607319_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 7.343e-4
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 
Query:   26 TKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSRE 73
             KK+L  PA S   E LF+V G+I   + NRL  D  E L+ +  + E
Sbjct:  104 AKKFLTPPATSTDVERLFSVAGNILCDERNRLLPDNVEKLLFMRANLE 247
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Match: gi|592945465|gb|GAXK01013088.1| (TSA: Calanus finmarchicus comp2491288_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 8.164e-4
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 0 
Query:    7 NPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLT 58
            N L+  K H++  P      K+ L  PA S KSE +F+ GG+I + + NRL+
Sbjct: 1655 NILQWWKSHEAVLPLLASLAKRILTIPASSSKSERVFSTGGNIVTAKRNRLS 1810
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BLAST of EMLSAG00000002743 vs. L. salmonis peptides
Match: EMLSAP00000002743 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:12813:13187:1 gene:EMLSAG00000002743 transcript:EMLSAT00000002743 description:"snap_masked-LSalAtl2s1590-processed-gene-0.12")

HSP 1 Score: 179.104 bits (453), Expect = 1.331e-59
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSREYSGKGHLLIVSIG 86
            MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSREYSGKGHLLIVSIG
Sbjct:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSREYSGKGHLLIVSIG 86
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BLAST of EMLSAG00000002743 vs. L. salmonis peptides
Match: EMLSAP00000000288 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:72989:73461:1 gene:EMLSAG00000000288 transcript:EMLSAT00000000288 description:"snap_masked-LSalAtl2s1042-processed-gene-0.20")

HSP 1 Score: 50.0618 bits (118), Expect = 1.727e-9
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSE 40
            +IK ENNPLE  KI+QSSF    F  KKYLCA   SV+SE
Sbjct:   55 LIKNENNPLEWWKINQSSFLHMAFLVKKYLCASPSSVESE 94
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BLAST of EMLSAG00000002743 vs. nr
Match: gi|928037617|ref|XP_013867469.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Austrofundulus limnaeus])

HSP 1 Score: 60.8474 bits (146), Expect = 9.518e-10
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLIL 67
            I+++NNPL   +++Q+ FPT      K+LCAP  SVKSE LF+    I     ++LTA   EMLI 
Sbjct:   52 IERKNNPLHYWRVNQARFPTLAATAAKFLCAPCTSVKSERLFSSASIIIEEHRSKLTAQHAEMLIF 117
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BLAST of EMLSAG00000002743 vs. nr
Match: gi|928064459|ref|XP_013881813.1| (PREDICTED: zinc finger BED domain-containing protein 4-like [Austrofundulus limnaeus])

HSP 1 Score: 58.151 bits (139), Expect = 3.954e-8
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLIL 67
            I+++NNPL   +++Q+ FPT      K+LCAP  SV++E LF+    I     ++LTA   EMLI 
Sbjct:  200 IERKNNPLHYWRVNQARFPTLAATAAKFLCAPCTSVENERLFSSASVIIEEHRSKLTAQHAEMLIF 265
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BLAST of EMLSAG00000002743 vs. nr
Match: gi|761920754|ref|XP_011409266.1| (PREDICTED: zinc finger BED domain-containing protein 1-like, partial [Amphimedon queenslandica])

HSP 1 Score: 56.225 bits (134), Expect = 4.079e-8
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILI 68
            I  +++PLE  K ++S FPT     ++YLC PA SV SE +F+  G + + + + LT +  +MLI +
Sbjct:   69 IHHDSDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFL 135
[Close]
BLAST of EMLSAG00000002743 vs. nr
Match: gi|1108894779|ref|XP_019133959.1| (PREDICTED: zinc finger BED domain-containing protein 4-like [Larimichthys crocea])

HSP 1 Score: 57.3806 bits (137), Expect = 9.756e-8
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSREY 74
            +++  +NPL   ++++  FP      + YLC+P  SV SE LF+   +I   + NRLT    EMLI+I+ +  Y
Sbjct:  426 VLQHSSNPLAYWQVNKGRFPALAQAARAYLCSPCTSVDSERLFSTAANIIDDKRNRLTPKNAEMLIMIKRNLPY 499
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BLAST of EMLSAG00000002743 vs. nr
Match: gi|808885188|gb|KKF32028.1| (Zinc finger BED domain-containing protein 4 [Larimichthys crocea])

HSP 1 Score: 57.3806 bits (137), Expect = 1.089e-7
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILIEYSREY 74
            +++  +NPL   ++++  FP      + YLC+P  SV SE LF+   +I   + NRLT    EMLI+I+ +  Y
Sbjct:  531 VLQHSSNPLAYWQVNKGRFPALAQAARAYLCSPCTSVDSERLFSTAANIIDDKRNRLTPKNAEMLIMIKRNLPY 604
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BLAST of EMLSAG00000002743 vs. nr
Match: gi|322793353|gb|EFZ16955.1| (hypothetical protein SINV_01046, partial [Solenopsis invicta])

HSP 1 Score: 53.5286 bits (127), Expect = 1.647e-7
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 0 
Query:    1 MIKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILI 68
            +IK+ +NP+   K HQS F        KYL AP FSV S+  F+  G+IY    N+L  +  +MLI I
Sbjct:   20 LIKRIDNPISWWKQHQSEFSNLQKLILKYLSAPPFSVNSKKSFSSAGNIYVENRNKLLPENAKMLIFI 87
[Close]
BLAST of EMLSAG00000002743 vs. nr
Match: gi|1101631503|ref|XP_018979270.1| (PREDICTED: zinc finger BED domain-containing protein 4-like [Cyprinus carpio])

HSP 1 Score: 53.9138 bits (128), Expect = 3.677e-7
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLIL 67
            + + ++P +   ++Q  FPT      K+LCAP  SV SE LF+V  +I   + NRL  +  EMLI 
Sbjct:   79 VPRSDSPFQYWGVNQIRFPTLAATAAKFLCAPCTSVDSERLFSVASNIIDARRNRLGGERAEMLIF 144
[Close]
BLAST of EMLSAG00000002743 vs. nr
Match: gi|340385071|ref|XP_003391034.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Amphimedon queenslandica])

HSP 1 Score: 55.0694 bits (131), Expect = 7.018e-7
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    2 IKQENNPLELCKIHQSSFPTHGFPTKKYLCAPAFSVKSENLFNVGGSIYSPQGNRLTADTGEMLILI 68
            I  +++PLE  K ++S FPT     ++YLC PA SV SE +F+  G + + + + LT +  +MLI +
Sbjct:  522 IHHDSDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFL 588
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002743 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002743 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 18
Match NameE-valueIdentityDescription
gi|592759871|gb|GAXK01194542.1|1.986e-635.94TSA: Calanus finmarchicus comp5147365_c0_seq1 tran... [more]
gi|592883628|gb|GAXK01074747.1|3.864e-629.41TSA: Calanus finmarchicus comp3869350_c0_seq1 tran... [more]
gi|592765800|gb|GAXK01188768.1|6.603e-635.14TSA: Calanus finmarchicus comp327525_c0_seq1 trans... [more]
gi|592919619|gb|GAXK01038756.1|2.141e-536.21TSA: Calanus finmarchicus comp4818162_c0_seq1 tran... [more]
gi|592941804|gb|GAXK01016749.1|6.570e-534.43TSA: Calanus finmarchicus comp2817258_c0_seq1 tran... [more]
gi|592898349|gb|GAXK01060026.1|6.971e-532.86TSA: Calanus finmarchicus comp4749793_c0_seq1 tran... [more]
gi|592752874|gb|GAXK01201539.1|1.218e-433.33TSA: Calanus finmarchicus comp4505367_c0_seq1 tran... [more]
gi|592884520|gb|GAXK01073855.1|4.410e-432.84TSA: Calanus finmarchicus comp4795922_c0_seq1 tran... [more]
gi|592901190|gb|GAXK01057185.1|7.343e-439.58TSA: Calanus finmarchicus comp5607319_c0_seq1 tran... [more]
gi|592945465|gb|GAXK01013088.1|8.164e-438.46TSA: Calanus finmarchicus comp2491288_c0_seq1 tran... [more]

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BLAST of EMLSAG00000002743 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000027431.331e-59100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1590:1281... [more]
EMLSAP000000002881.727e-962.50pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:7298... [more]
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BLAST of EMLSAG00000002743 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002743 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002743 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 8
Match NameE-valueIdentityDescription
gi|928037617|ref|XP_013867469.1|9.518e-1043.94PREDICTED: zinc finger BED domain-containing prote... [more]
gi|928064459|ref|XP_013881813.1|3.954e-840.91PREDICTED: zinc finger BED domain-containing prote... [more]
gi|761920754|ref|XP_011409266.1|4.079e-837.31PREDICTED: zinc finger BED domain-containing prote... [more]
gi|1108894779|ref|XP_019133959.1|9.756e-835.14PREDICTED: zinc finger BED domain-containing prote... [more]
gi|808885188|gb|KKF32028.1|1.089e-735.14Zinc finger BED domain-containing protein 4 [Larim... [more]
gi|322793353|gb|EFZ16955.1|1.647e-741.18hypothetical protein SINV_01046, partial [Solenops... [more]
gi|1101631503|ref|XP_018979270.1|3.677e-737.88PREDICTED: zinc finger BED domain-containing prote... [more]
gi|340385071|ref|XP_003391034.1|7.018e-737.31PREDICTED: zinc finger BED domain-containing prote... [more]
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BLAST of EMLSAG00000002743 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1590supercontigLSalAtl2s1590:12813..13187 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1590-processed-gene-0.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002743 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002743EMLSAT00000002743-698590Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1590:12813..13187+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002743-685509 ID=EMLSAG00000002743-685509|Name=EMLSAG00000002743|organism=Lepeophtheirus salmonis|type=gene|length=375bp|location=Sequence derived from alignment at LSalAtl2s1590:12813..13187+ (Lepeophtheirus salmonis)
ATGATAAAACAGGAAAATAATCCTCTAGAATTGTGTAAAATTCATCAATC
AAGTTTCCCCACACATGGTTTTCCTACTAAAAAGTATCTCTGTGCACCAG
CTTTTTCAGTGAAGAGTGAAAATCTCTTCAATGTTGGCGGTTCCATCTAT
TCTCCACAAGGAAATAGACTGACTGCTGATACTGGAGAGATGCTAATGTT
CCTAAAATAGAATTAGTTATTAGGTTTTAAGTATAAGTTATAGGTTATGA
TTTATTTTTTTTAGTTTCAGTTAGTTAAATATAAATGAAAGATATTAATT
TTTAATTATAGTTTGATTGAATATAGTAGGGAGTACTCTGGGAAAGGACA
CTTGTTGATCGTGTCAATCGGCTAG
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