EMLSAG00000002855, EMLSAG00000002855-685621 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002855
Unique NameEMLSAG00000002855-685621
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002855 vs. C. finmarchicus
Match: gi|592930921|gb|GAXK01027632.1| (TSA: Calanus finmarchicus comp3430935_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 3.559e-4
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 0 
Query:   74 VEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSR 110
            VEH S+L  PD  C FC++  + P H DC+R++I +R
Sbjct:   22 VEHVSQLSEPD--CKFCRKSTADPQHSDCSRMQIFTR 126
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BLAST of EMLSAG00000002855 vs. C. finmarchicus
Match: gi|592777573|gb|GAXK01176995.1| (TSA: Calanus finmarchicus comp141390_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 1.372e-1
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 0 
Query:   68 EPLREGVEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSREYT 113
            +P R G+    E++  DP  HF   PGS+P   +   LK++ RE +
Sbjct: 13724 DPGRHGLVSSVEIIEGDPDAHFRVRPGSEPDEYNIEVLKLLDREIS 13861
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BLAST of EMLSAG00000002855 vs. L. salmonis peptides
Match: EMLSAP00000002855 (pep:novel supercontig:LSalAtl2s:LSalAtl2s164:120837:127535:-1 gene:EMLSAG00000002855 transcript:EMLSAT00000002855 description:"maker-LSalAtl2s164-snap-gene-1.16")

HSP 1 Score: 239.58 bits (610), Expect = 2.541e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MMSFKKSTESRNRPTQLKLNLRRTSSCSALPVHALRAAHYKNQLAKQEEEEEQARGPPPIKVPTFKLEPLREGVEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSREYTHKKL 117
            MMSFKKSTESRNRPTQLKLNLRRTSSCSALPVHALRAAHYKNQLAKQEEEEEQARGPPPIKVPTFKLEPLREGVEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSREYTHKKL
Sbjct:    1 MMSFKKSTESRNRPTQLKLNLRRTSSCSALPVHALRAAHYKNQLAKQEEEEEQARGPPPIKVPTFKLEPLREGVEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSREYTHKKL 117
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BLAST of EMLSAG00000002855 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold289_size220122-snap-gene-0.15 (protein:Tk01614 transcript:maker-scaffold289_size220122-snap-gene-0.15-mRNA-1 annotation:"rho rac guanine nucleotide exchange")

HSP 1 Score: 89.7373 bits (221), Expect = 2.414e-22
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 0 
Query:   53 QARGPPPIKVPTFKLEPLREGVEHFSELVTPDPPCHFCKEPGSKPVHEDCTRLKIVSR 110
             +R PP I      L  LREGVEH SELVTPDPPCHFC+EP SKPVHEDCTRLKIVSR
Sbjct:   25 NSRAPPII------LHSLREGVEHISELVTPDPPCHFCREPTSKPVHEDCTRLKIVSR 76
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002855 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002855 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592930921|gb|GAXK01027632.1|3.559e-445.95TSA: Calanus finmarchicus comp3430935_c0_seq1 tran... [more]
gi|592777573|gb|GAXK01176995.1|1.372e-134.78TSA: Calanus finmarchicus comp141390_c1_seq1 trans... [more]
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BLAST of EMLSAG00000002855 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000028552.541e-82100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s164:12083... [more]
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BLAST of EMLSAG00000002855 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002855 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002855 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002855 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold289_size220122-snap-gene-0.152.414e-2274.14protein:Tk01614 transcript:maker-scaffold289_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s164supercontigLSalAtl2s164:120837..127535 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s164-snap-gene-1.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002855 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002855EMLSAT00000002855-698702Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s164:120837..127535-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002855-685621 ID=EMLSAG00000002855-685621|Name=EMLSAG00000002855|organism=Lepeophtheirus salmonis|type=gene|length=6699bp|location=Sequence derived from alignment at LSalAtl2s164:120837..127535- (Lepeophtheirus salmonis)
ATCACATATTACGAAGAAGCAGTGTGGAAATGATGAGCTTTAAAAAAAGC
ACAGAGTCCAGGAATCGTCCTACACAACTCAAACTCAATCTTCGACGAAC
AAGCTCTTGCTCTGCCCTTCCTGTTCACGCTCTACGAGCTGCACACTATA
AAAATCAGCTTGCAAAGCAAGAGGAGGAAGAAGAACAGGCCCGAGGACCT
CCTCCAATCAAAGTTCCAACTTTTAAACTTGAACCTCTTCGAGAGGGGGT
TGAACATTTCAGTGAGTTAGTGACTCCAGATCCACCATGTCATTTTTGTA
AGGAGCCTGGATCCAAGCCTGTTCATGAGGATTGTACACGGTTGAAAATT
GTGAGCAGAGGTAAGTGGCCAAATGCATTTCTCAGTTTCTGTATTATGAC
ACTATCCTTACACTGTTATTCGCCTAACTCCAGTCTATAAGGGAATTTTG
TTGGAGACATTCATTTTTTGGGATTAAAGTATTTACGCACACTTTAGGGT
AGTATCATTAATGTTGTAAACTCTTATTTAAAGGAGAAATTAAGTTCAAA
TTTATTCCCCTGAAAAACATGGAAATTATAAAACAATAGGTTAAGCTCCC
AAATTAATAGTGATTATTTTTACAATTTTTTTTTTAATTTAACGCTAAAG
ACTTCTTCAATCCTAAAAAAGTAGACATATTAGTATAACCATACAATAAA
TGAAGTAAGTATAAGAAGAATGCTCATTTATATAGTGATATTAGGGATAG
AAGGTACGCTAAATCCACGGTTTAGTACCTTTTACGGTACGCGGTTCGGT
ACTGTACAATAGTAAAATGTTTTATAATGTATTTTTTCAAGTTTTTTTCG
ATATTTTATTCTTTGATAATTATTGATAGATATCTGAACTTCTTTAAAAA
TAAAGGTTGATATAAAATATTCATGGGTAACATAATACTAATATTCATGA
ATTTATATATATATTTATTTATTTTTAGCGAAAAAATGAGTTTGTATACA
TTTACCAATAATAAACATGACTTATTAACAGTCACAATATCGTCATCTGT
TGAAAAAATTGTTTTAATTAAAACATGGGTATCTGTATAAGCAAATACAG
AAATTATTTCTTATTTATCAATGGAAGCTTATGGATTAAAATTTTACCTC
ACTATCTAAATCTATTAATTTAAAAAAGTAAATAAATAAAATTTAGTAGC
AAAATATTTAATATGTGATTATAAATATATACGTACCGCACTGACGGGAA
AAAACATACCAAACTGTAACGGTCGTGCCCAACCACGTACCCCCCCCCCC
CGCCCCGTACCGTATATAAAAAAATGTATCTCGTTCGATGACAATCAACC
ATCACAAATGAAATAACAATCTAAAAATGCATTCCTAAATCATGTTTATT
TGATGATGTCGTAAAAATAAATTAAAATTATTTCATTGAATTTTTTACTG
AAAAAACAAAAGTTCATTAAATTTTGTCACATCGCCATTTTCAAAATAAT
GAAAGGTTGTTTCTTAAGCCATTAATTAAGTGAGAGGGAACGAATGACAG
CAATTATTCGGCCGTGGTAAATGGAAAAATGTTTGTAAAACGGCATTAAT
TTATTTAGCAAAAAGAAAAGTAATGCTACAATTTGCACTTTTGATTTCTT
CTTTTTGAAATGTTTTATNTACATAATAATAAGCCTGTCATTTCCCTTTA
CTTGTTGAAGGATCTCCTATTTTGAAAGGTATTTTTATATTGTTGTAGAA
CTTACTTATGTGCTTATATAACTCGTAGCGGTAGTTACTGGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAG
AAGATAACTCCCTCAGAAATTATCTGTGTTACTGTTCGTTTTTCATGAGC
ACATAGCTATTCAATACCAAGGCTTCATATCTATATTTATCGATCGTTTA
GGAAAGGTAAATTTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGTAGGACAAGTTAATATGGCACATTTWCGGT
CCGAAGCAACAGATGTTCCCAATTATTGCAAACTAAGTTCGTTTTGACAT
GCCACAAATTTTTATTATTGTAAATAACTATTAGATTCTGTTTTATTTCT
TAAAAAATTTATATCAACAGATATTAATTTGTGAATGCGTAAAGAATAAC
TTTTCAAACTAAAGAACAATTTTTAAGAACAGCTAAAAAAATTCATAATC
TCTTCTATAAGACAGATTATAGATTTTAAAATGGACACCATTTGAAGTCA
TTTGTAATGTGTTTTTACATTAATTCTTGAATATACTTTGCTCGCCAATT
GAGAAAACTACTTGCTATTCAACAGCGGACAATATTATGATGATAGTATT
TTAACTTTTGGAGAAGAAAGTTGGATTCTTACCTCGTTAATTAAAAGTAT
TGGGGTTGTGACGGAAACTTCAAATGCTGCCCAGGCATATTTAATCAGCT
TTTTACAATAAGGGATATTATAGGAAAAACATGTATACCTCGTCTTTTTG
CATTACTAACATTTAAATCGCAGGAGATTTACCCCTGCATTTTCCAAGCG
TTGAAGGGACCAAATTAGGAAGAGGGGGATTTTGGAGACAAGGTTATTTG
GCCTCTGTCATCAACAAACCTTTTTATTATGTATAAAGTGGCATTGGGGA
AAAGGCATGAAAATATTGAGACACACCGTTTTTTTCGAAAAGAAAGTGTA
CACTTATAACATAATTATAAGTTTATTGACCAATAGTGAATCTTTCTTCT
TTTTAAATAAAATAAAACCTTGTACATACGAGTAGTAGACCTTATTGGAT
ATCGAATATATCCTTCTTCAATCTGAATCATTTGTTCTTATCGGTGCCTG
AAGATTACACACTGATAGTGTAATTTCTGATTATAGCCCTTCATTGACAG
TTAACGGCCTGCTTCATGGAGTTCATATTTTCGTGACTTTAGCAATAGGG
GTTGGAATAGATTTGCGACAAAAAACATAATCCAGTGAGTAAAAGTCTAG
ACCGTACATAAANNNNNNNNNNACATAATCCAGTGAGTAAAAGTCTAGAC
CGTASATAAKTRTTTTTTTTTTTTTTAAATMTTCGTTCTCATCAAGRTTT
TAATAYAACATTTGGTATTGGTTTMTCCTMTTTCAGAAGGGAATTACCGT
CTGAGGGYGMCTGGTTAACCTATGGTAGAAATTTTGTTATTAATTATTTT
TATAATCTTCCCTATTAAAGCAAAAACCCTAGAGAACTAAATAAGATTTT
TTTGATGGTTATGAGTGCCAAAAATGACAAATCAATGTCCCTAATTATAG
TCAACTACCTATAATTACATTTATTTTTGTCTTAGTCGATTTTTCAATTA
TTTTTATAAGAGAAGATAACCCCTCATTTACAAGATGACTCGAGGTTCTG
CAGTAGTCCTTGAAAACGTTACAAATGGGTATCTTTCGTAGTTAGGATCA
AAAGTGGCCTCTTCCAATTTCCACTCTCCTTTTTAACCAACGCCCAACCT
AGCTCTGACTGTTTGTATTAACACAGTCGGACTCGTTTTAATAATCCTTT
ACATCCTTCCTGTGTCGATTTTCGACTTCCTTCCCAATTGGTATGTTTTG
TTAATGACACAACCATCTTTGCAAGGCTCTTCGACTCAATAAACGGAAAT
AAGGTCAATATTTAACCGATTTTGCAATGTTAAAGATACTAAAGTCCACG
CCAACCATAGTCAAAATATGTTGAATACCTCCCCTTGTTGACAAAAATAA
GTTTGTTAAAAAACTTTTTCTTTACTAATAAAGTAAAATTGTTTTCTTAA
GAAGATCATATTTTTTAAATATTCCTTTAATTAATCAGATGGAGTTACAC
TAATTAACTATAAGGAGGGTTGTGCAAGTATTTATTTATTTGGTCCATTC
CAGTCTTAAGACTGACCTCCTATCAGTCCTTGGGACCGGGGCTAAAGACT
GTCCCTATTAGAACTGATTTTTTTAAAGTAATAAAGTTGATTGACGTCAT
CAAGGACCCAACGTTATCAGTTTTAGGACATATATGAAAGAATGAACTTG
ACAGGATTGTGACTGAACTGGACAGTGTTCATTCCTAAATAAGCATTGAC
ACAAGACTAATCTTAAGTAAACATTATAGTATTATAATTACTCCAGTTGA
CCTACAATTGTCTTTGAAGTTCATATACAAAGTATAAGAACTTCTCTAGG
AACGACCAAAGACATACTGACATATAGGGCTCATTTTAAAAAGCTTGTTC
AACCCTGCATCAGTTGAAAAAAAATTGAATCAATTGACAAATTTGTTGTA
CAAAATATTTAGAAAAAACACAAAGCCCTCTATTGAGTCCGTGCCTGGAG
CAACAACAAAATAATTGCTCCAACTCTGGTACTCAGTGATACGTTCGGTT
GCAAGGAAAGGAGGGAATTTGAGACTTCCAAAGTGGATTTTGAGGCAACA
TCAATGCAGGCTAAGATGTTAGGGGTGGTTAGCTCCGAAGGTCATGTCAT
ACCTGCTCATGTGTACTTCTAAGGCCTTAATGTCAACACTAGTGCCTACT
TAGACATGCTAGAGATCAATGTGAGGCATTTGATCGACAACGTTGTCAAT
AAGAGGCATTGCATATGACAGCCGGACTCGGCTCCTTGCCAAAAAATAAA
AATTCGTCGGATCTAAATCTGATCCATTTTTATTTATTTATTTGGGGAAC
GACCGAACGACAAACCACCAGAAACTTCTGCAATACCAAAGGCGAACTTA
TCAGTCAAATCAAGAAGAAACTATAGGATTTGCCAAGATACTAAGTGGCA
AGGGCCTGCTTGAGGTTTCAGCCTCGTATAGAGACTGTAATTAAGGCTGG
AGGMGATTTTATTCAATAAAATAAATTAGAATCCATCAAGCATTCTGAAT
CTGTTTTTGTTTATTTTGTTTTTTTAATTTGATAACTGGTTGGAGAGAAA
ATTGCATTTAAAAAAATTCATTTTCCCCGTACAGATACCCTACGTACCCT
ATTTATATATATTTGTCAAAAGATATTAATGTTCATTGGAACAAATGAGA
CAATAATCAGGCAGGTAACATACATAAATACTTTATAATGAAAGGAACTA
TGACTGATAATAAGTTATTTATTTACATGATACTAAATAATCTACTTCTA
AAAATATAAATACATAGAATATTGAGAATACAAGAAAAAACCTTTTTCTC
TCTCTTTCTGTACGTTGTATACCCATATATAACATAATATTTCTTAATGA
CCTTATATTACACAAAGATATGTGTATAAATTATTATTGAAATGTGTACC
TGGGTATGCATATGAAGTTATATTTACATTGGTGTAAATGGGCATTAGAA
AGGTTTGATTTTTAACCTTTGTTTAATTTTGATTACAGCTGGAGCAAAAA
AGTTGTCACTTGGTATGAAAATTACTTATACTAAATTGAATTGTCTTATG
AGGTCATCCTTAGGTCGCATTTATATCAAATTATGAAAAAAGACAAAAAT
TATTTACCTAGTAAATATTGATGCTAAGAAGAAATTTTTTGTTACCCTGC
ATAAAATAATTTCAATAGACCCTTTATAAATCTATCAAAAATGTTTAGAA
AGTTTTTTTTCTAAAATTATTTAATGGAACAAAAAAGAGTTAAAAAGTTA
GGAAAATTTGATAATCTACTTTTTTAGAAAATAAAAGATCACATTTTTCT
AAAATTATTTTCTCTCTTTACTGCATAGGGGCACTTTAGAAAAAACTTTA
TAATTACTTTATTAGGTTACAAAAATATCTAAAATAATTAATACATTAAA
ATAATGATTAATGCTCTATTTGAAGAGATAAAATAAATAACTTTTTTCCC
CTTTCAAGCTTTGAATTTATGTGTTACCTAAAGATGACATTATTGGGCAA
TGAAATCTTGCATAGGTTATGTTCTTAAGCCGTAATCGTAATTCCAAAAA
CATGTTGAAAAAAACCACCCTAATGTAGACACATATATCTAATTGTCTCT
CATAAATTTCATGTTCCCATATTATAGATACATATATACGATCCTGTAAA
TATTCCTACAAAACTATACATGTATAGGATATTCATGATAAGCTTACACA
AAATTTATTTGTATTTAAATTACTTTTCCAATTTTTTTGAGTAAGTGAAT
CAATAAAAAGACCATTAGGTTGTACTTTTGTAAAAGTATATAGACTAGGG
ACCTGAAACTTGCAGTAGCCTGACTAAATTAAGAAAAAGGTGAGTTTTAG
TTAAATCTAGAATAAGCAACTCAAAACCTATTTGTGAGTTGTTTTAATAA
TATATTTAGCAATATTTTTTATTCAATATGTCCTCTTTTACAACCAATAA
CCTCCTACACGCTGGTTTGTATGTTGATAGCTTGTAGCGTTGAAGGCAGT
GTCCATGGTATGTTGAAGGTAACTTGGAGCGGAGAGGTGTAGAAGACATT
TTTGTTCGCGGCGACGGCCCAAACTGCAAATTTAAGAGGGTGGAAGTATT
ATGTGAAAATGATTATATTATAACAACATTTTTAAAAGAAGCACATTTCA
CAATTAATTTTCATATTCTTAAATCAAAGAATATACACACAAGAAGTTA
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