EMLSAG00000002921, EMLSAG00000002921-685687 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002921
Unique NameEMLSAG00000002921-685687
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592784573|gb|GAXK01169995.1| (TSA: Calanus finmarchicus comp59_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.718e-1
Identity = 17/29 (58.62%), Postives = 19/29 (65.52%), Query Frame = 0 
Query:   22 QVTNLWGRETF---EVEMKAKADRDKASP 47
             VT+L GRET       MK KADRD+ASP
Sbjct:  379 HVTDLSGRETICRVTGGMKVKADRDEASP 465
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592952839|gb|GAXK01005714.1| (TSA: Calanus finmarchicus comp235921_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 5.462e+0
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 0 
Query:   12 TPSPHSTLLFQVTNLWGRET 31
            TPS HS++L QV  LW   T
Sbjct:   38 TPSLHSSMLSQVLQLWSHAT 97
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592860589|gb|GAXK01096973.1| (TSA: Calanus finmarchicus comp55365_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 6.223e+0
Identity = 8/24 (33.33%), Postives = 14/24 (58.33%), Query Frame = 0 
Query:    7 ESKMPTPSPHSTLLFQVTNLWGRE 30
              +MP+P PH+ L+ +  N W + 
Sbjct: 1583 RGRMPSPGPHTPLMMKTDNSWAQR 1654
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592793630|gb|GAXK01160938.1| (TSA: Calanus finmarchicus comp502165_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 7.360e+0
Identity = 15/43 (34.88%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKA-KADR 42
            + + ++ES + TPS H +    VTN W   T  V  +  K DR
Sbjct: 1632 LFSALNESILETPSMHESSFISVTNPWAMVTVPVYRRVTKLDR 1760
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592793631|gb|GAXK01160937.1| (TSA: Calanus finmarchicus comp502165_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 7.364e+0
Identity = 15/43 (34.88%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKA-KADR 42
            + + ++ES + TPS H +    VTN W   T  V  +  K DR
Sbjct: 1644 LFSALNESILETPSMHESSFISVTNPWAMVTVPVYRRVTKLDR 1772
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592793634|gb|GAXK01160934.1| (TSA: Calanus finmarchicus comp502165_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 7.392e+0
Identity = 15/43 (34.88%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKA-KADR 42
            + + ++ES + TPS H +    VTN W   T  V  +  K DR
Sbjct: 1742 LFSALNESILETPSMHESSFISVTNPWAMVTVPVYRRVTKLDR 1870
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592793636|gb|GAXK01160932.1| (TSA: Calanus finmarchicus comp502165_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 7.395e+0
Identity = 15/43 (34.88%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKA-KADR 42
            + + ++ES + TPS H +    VTN W   T  V  +  K DR
Sbjct: 1754 LFSALNESILETPSMHESSFISVTNPWAMVTVPVYRRVTKLDR 1882
[Close]
BLAST of EMLSAG00000002921 vs. C. finmarchicus
Match: gi|592906044|gb|GAXK01052331.1| (TSA: Calanus finmarchicus comp2128137_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 9.634e+0
Identity = 10/27 (37.04%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   14 SPHSTLLFQVTNLWGRETFEVEMKAKA 40
            S   TL F++  LW R +FE+++   A
Sbjct:  116 STSGTLFFRLLFLWPRRSFEIKLNISA 196
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BLAST of EMLSAG00000002921 vs. L. salmonis peptides
Match: EMLSAP00000002921 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1685:6905:7075:1 gene:EMLSAG00000002921 transcript:EMLSAT00000002921 description:"augustus_masked-LSalAtl2s1685-processed-gene-0.0")

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-29
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKAKADRDKASP 47
            MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKAKADRDKASP
Sbjct:    1 MVTQVHESKMPTPSPHSTLLFQVTNLWGRETFEVEMKAKADRDKASP 47
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002921 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002921 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592784573|gb|GAXK01169995.1|1.718e-158.62TSA: Calanus finmarchicus comp59_c1_seq1 transcrib... [more]
gi|592952839|gb|GAXK01005714.1|5.462e+055.00TSA: Calanus finmarchicus comp235921_c0_seq1 trans... [more]
gi|592860589|gb|GAXK01096973.1|6.223e+033.33TSA: Calanus finmarchicus comp55365_c0_seq1 transc... [more]
gi|592793630|gb|GAXK01160938.1|7.360e+034.88TSA: Calanus finmarchicus comp502165_c0_seq8 trans... [more]
gi|592793631|gb|GAXK01160937.1|7.364e+034.88TSA: Calanus finmarchicus comp502165_c0_seq7 trans... [more]
gi|592793634|gb|GAXK01160934.1|7.392e+034.88TSA: Calanus finmarchicus comp502165_c0_seq4 trans... [more]
gi|592793636|gb|GAXK01160932.1|7.395e+034.88TSA: Calanus finmarchicus comp502165_c0_seq2 trans... [more]
gi|592906044|gb|GAXK01052331.1|9.634e+037.04TSA: Calanus finmarchicus comp2128137_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002921 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029211.523e-29100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1685:6905... [more]
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BLAST of EMLSAG00000002921 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002921 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002921 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002921 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1685supercontigLSalAtl2s1685:6905..7075 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1685-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002921 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002921EMLSAT00000002921-698768Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1685:6905..7075+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002921-685687 ID=EMLSAG00000002921-685687|Name=EMLSAG00000002921|organism=Lepeophtheirus salmonis|type=gene|length=171bp|location=Sequence derived from alignment at LSalAtl2s1685:6905..7075+ (Lepeophtheirus salmonis)
GGAAAATCAGATGAGGTACAAGAGCAAATGGTGACTCAAGTTCATGAGTC
CAAAATGCCCACACCTTCGCCTCATTCAACGTTACTTTTTCAGGTCACAA
ATCTATGGGGTCGGGAGACCTTTGAGGTGGAAATGAAAGCCAAGGCTGAT
CGTGATAAGGCCTCTCCTTAA
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