EMLSAG00000002988, EMLSAG00000002988-685754 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592901582|gb|GAXK01056793.1| (TSA: Calanus finmarchicus comp3522373_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.082e+0 Identity = 17/59 (28.81%), Postives = 30/59 (50.85%), Query Frame = 0 Query: 69 HLREAHPTRKLSMLVSECQVSCNSQDSRNRICTC---------CETSSERFSVGYLPRI 118 H+++AH ++ + +C+ + +SQD R C C + +RFS+ YLP I Sbjct: 451 HIKKAHKAEQIFLNCEKCRKTVSSQDMRGHFGQCMLYRRPATECFSIDDRFSM-YLPGI 624
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592901583|gb|GAXK01056792.1| (TSA: Calanus finmarchicus comp3522373_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.140e+0 Identity = 17/59 (28.81%), Postives = 30/59 (50.85%), Query Frame = 0 Query: 69 HLREAHPTRKLSMLVSECQVSCNSQDSRNRICTC---------CETSSERFSVGYLPRI 118 H+++AH ++ + +C+ + +SQD R C C + +RFS+ YLP I Sbjct: 528 HIKKAHKAEQIFLNCEKCRKTVSSQDMRGHFGQCMLYRRPATECFSIDDRFSM-YLPGI 701
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592785798|gb|GAXK01168770.1| (TSA: Calanus finmarchicus comp1474_c2_seq2 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 1.910e+0 Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+ +QGY Sbjct: 235 GKDNERRLTGAHETSSIHDFSAGVANRGC-SIRIPREVAEQGY 360
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592785799|gb|GAXK01168769.1| (TSA: Calanus finmarchicus comp1474_c2_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.454e+0 Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+ +QGY Sbjct: 281 GKDNERRLTGAHETSSIHDFSAGVANRGC-SIRIPREVAEQGY 406
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778768|gb|GAXK01175800.1| (TSA: Calanus finmarchicus comp3330_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.496e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 963 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1088
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778767|gb|GAXK01175801.1| (TSA: Calanus finmarchicus comp3330_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.666e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 963 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1088
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778764|gb|GAXK01175804.1| (TSA: Calanus finmarchicus comp3330_c0_seq5 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.673e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 911 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1036
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778765|gb|GAXK01175803.1| (TSA: Calanus finmarchicus comp3330_c0_seq4 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.675e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 918 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1043
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778763|gb|GAXK01175805.1| (TSA: Calanus finmarchicus comp3330_c0_seq6 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.828e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 911 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1036
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Match: gi|592778766|gb|GAXK01175802.1| (TSA: Calanus finmarchicus comp3330_c0_seq3 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.830e+0 Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0 Query: 92 SQDSRNRICTCCETSS-ERFSVGYLPRICDSSRVPEELNQQGY 133 +D+ R+ ETSS FS G R C S R+P E+++QGY Sbjct: 918 GKDNERRLTGAHETSSIHDFSSGVANRGC-SIRIPREVSEQGY 1043
BLAST of EMLSAG00000002988 vs. L. salmonis peptides
Match: EMLSAP00000002988 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:411371:433410:1 gene:EMLSAG00000002988 transcript:EMLSAT00000002988 description:"snap_masked-LSalAtl2s170-processed-gene-4.5") HSP 1 Score: 288.886 bits (738), Expect = 3.742e-101 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 Query: 1 METIYLVRWTDNALITVASDIHGLNPTVNDIVPIDKFNNNNLRYNLFQKENKLFSVRVFNTYIASKHVHLREAHPTRKLSMLVSECQVSCNSQDSRNRICTCCETSSERFSVGYLPRICDSSRVPEELNQQGYLLKGK 138 METIYLVRWTDNALITVASDIHGLNPTVNDIVPIDKFNNNNLRYNLFQKENKLFSVRVFNTYIASKHVHLREAHPTRKLSMLVSECQVSCNSQDSRNRICTCCETSSERFSVGYLPRICDSSRVPEELNQQGYLLKGK Sbjct: 1 METIYLVRWTDNALITVASDIHGLNPTVNDIVPIDKFNNNNLRYNLFQKENKLFSVRVFNTYIASKHVHLREAHPTRKLSMLVSECQVSCNSQDSRNRICTCCETSSERFSVGYLPRICDSSRVPEELNQQGYLLKGK 138 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002988 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002988 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000002988 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000002988 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002988 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002988 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002988 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s170:411371..433410+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002988-685754 ID=EMLSAG00000002988-685754|Name=EMLSAG00000002988|organism=Lepeophtheirus salmonis|type=gene|length=22040bp|location=Sequence derived from alignment at LSalAtl2s170:411371..433410+ (Lepeophtheirus salmonis)back to top Add to Basket
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