EMLSAG00000003153, EMLSAG00000003153-685919 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592883369|gb|GAXK01075006.1| (TSA: Calanus finmarchicus comp274562_c1_seq2 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 1.862e-3 Identity = 67/227 (29.52%), Postives = 120/227 (52.86%), Query Frame = 0
Query: 7 CCKIRSAVLAIGFTLLLIETASVLVTFWVMSNAESVSDSVVSWLRVRRNKFELEELEIIHGKMYFVERYLDFLAFPATFHIXXXXXXXXXXSGAVFSNRILXXXXXXXXXXXXXXXXXXXXXXXXXXPSYIFKVXXXXXXXXXXXXXXXXXXXXRSFYILLRDLKLKEAMAKVYKNSEAGSSSFKPPSYVRRPS--------WAIRPPPSLWDADYLRQLDPRFNAS 225
CC +R++ + I LLI A + +T M+ E +V+ + ++ E K Y V+ ++ A P T ++LMVSN+L L GA+FS+ +LL+PW+ +Y++ IL I LLI+ +I L F+V++FL++ P +++ ++++LR ++ + K++ + S P Y P WA+ PP + WD +L+Q+DPR+ A+
Sbjct: 539 CCGVRTSAVLIFSLYLLIHAAVLAITILFMTKPEENLANVLDLVDTDDSRLESSYF-YASIKPYIVQNSGEYFALPITIILVLMVSNVLALWGALFSHPLLLLPWLALYLVFILFIASLLIYIIIILQDIWFQVLLFLVIAPVLVVGAAF------WFVILRLYRITRYSNR--KSAPPQAHSLPPTMYTPEPHSWDQPLPIWAVNPPENAWDPSFLQQIDPRYVAT 1192
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592883370|gb|GAXK01075005.1| (TSA: Calanus finmarchicus comp274562_c1_seq1 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 2.571e-3 Identity = 67/227 (29.52%), Postives = 120/227 (52.86%), Query Frame = 0
Query: 7 CCKIRSAVLAIGFTLLLIETASVLVTFWVMSNAESVSDSVVSWLRVRRNKFELEELEIIHGKMYFVERYLDFLAFPATFHIXXXXXXXXXXSGAVFSNRILXXXXXXXXXXXXXXXXXXXXXXXXXXPSYIFKVXXXXXXXXXXXXXXXXXXXXRSFYILLRDLKLKEAMAKVYKNSEAGSSSFKPPSYVRRPS--------WAIRPPPSLWDADYLRQLDPRFNAS 225
CC +R++ + I LLI A + +T M+ E +V+ + ++ E K Y V+ ++ A P T ++LMVSN+L L GA+FS+ +LL+PW+ +Y++ IL I LLI+ +I L F+V++FL++ P +++ ++++LR ++ + K++ + S P Y P WA+ PP + WD +L+Q+DPR+ A+
Sbjct: 630 CCGVRTSAVLIFSLYLLIHAAVLAITILFMTKPEENLANVLDLVDTDDSRLESSYF-YASIKPYIVQNSGEYFALPITIILVLMVSNVLALWGALFSHPLLLLPWLALYLVFILFIASLLIYIIIILQDIWFQVLLFLVIAPVLVVGAAF------WFVILRLYRITRYSNR--KSAPPQAHSLPPTMYTPEPHSWDQPLPIWAVNPPENAWDPSFLQQIDPRYVAT 1283
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592865846|gb|GAXK01091716.1| (TSA: Calanus finmarchicus comp1186219_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 3.341e-3 Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 0
Query: 199 PSWAIRPPPSLWDADYLRQLDPRF 222
P WAI PP + WD YL+QLDPRF
Sbjct: 870 PIWAIAPPQTAWDPVYLQQLDPRF 941
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592883367|gb|GAXK01075008.1| (TSA: Calanus finmarchicus comp274562_c1_seq4 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 3.852e-2 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 0
Query: 199 PSWAIRPPPSLWDADYLRQLDPRFNAS 225
P WA+ PP + WD +L+Q+DPR+ A+
Sbjct: 539 PIWAVNPPENAWDPSFLQQIDPRYVAT 619
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592883368|gb|GAXK01075007.1| (TSA: Calanus finmarchicus comp274562_c1_seq3 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 4.063e-2 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 0
Query: 199 PSWAIRPPPSLWDADYLRQLDPRFNAS 225
P WA+ PP + WD +L+Q+DPR+ A+
Sbjct: 630 PIWAVNPPENAWDPSFLQQIDPRYVAT 710
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592895102|gb|GAXK01063273.1| (TSA: Calanus finmarchicus comp809067_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 4.870e-2 Identity = 28/83 (33.73%), Postives = 39/83 (46.99%), Query Frame = 0
Query: 202 AIRPPPSLWDADYLRQLDPRFNASTRSGRNPPNSRSCTHKKSSIFKESDMESCSVETSSIATGGKDDLQSVMTLSDKYKLQEE 284
AI PP S WD +YL + DPRF T + +S + S +SD + ET S G+D LSD+Y +E+
Sbjct: 711 AIAPPQSAWDPEYLIERDPRFVVGTGGTVSEVDSYADREDSYSCEGQSDSYADRHETYSDFDSGED----TDYLSDEYTERED 947
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Match: gi|592895101|gb|GAXK01063274.1| (TSA: Calanus finmarchicus comp809067_c0_seq2 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 3.509e-1 Identity = 28/83 (33.73%), Postives = 39/83 (46.99%), Query Frame = 0
Query: 202 AIRPPPSLWDADYLRQLDPRFNASTRSGRNPPNSRSCTHKKSSIFKESDMESCSVETSSIATGGKDDLQSVMTLSDKYKLQEE 284
AI PP S WD +YL + DPRF T + +S + S +SD + ET S G+D LSD+Y +E+
Sbjct: 31 AIAPPQSAWDPEYLIERDPRFVVGTGGTVSEVDSYADREDSYSCEGQSDSYADRHETYSDFDSGED----TDYLSDEYTERED 267
BLAST of EMLSAG00000003153 vs. L. salmonis peptides
Match: EMLSAP00000003153 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:732203:749764:-1 gene:EMLSAG00000003153 transcript:EMLSAT00000003153 description:"maker-LSalAtl2s175-augustus-gene-8.8") HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MIRRFYCCKIRSAVLAIGFTLLLIETASVLVTFWVMSNAESVSDSVVSWLRVRRNKFELEELEIIHGKMYFVERYLDFLAFPATFHILLMVSNLLLLSGAVFSNRILLIPWIIMYILKILIITGLLIFFLIKLPSYIFKVIIFLILCPFIIIFGFIIFVIRSFYILLRDLKLKEAMAKVYKNSEAGSSSFKPPSYVRRPSWAIRPPPSLWDADYLRQLDPRFNASTRSGRNPPNSRSCTHKKSSIFKESDMESCSVETSSIATGGKDDLQSVMTLSDKYKLQEEVHVLPPIISTESSFDIDDKFNGFADRWRNSI 315
MIRRFYCCKIRSAVLAIGFTLLLIETASVLVTFWVMSNAESVSDSVVSWLRVRRNKFELEELEIIHGKMYFVERYLDFLAFPATFHILLMVSNLLLLSGAVFSNRILLIPWIIMYILKILIITGLLIFFLIKLPSYIFKVIIFLILCPFIIIFGFIIFVIRSFYILLRDLKLKEAMAKVYKNSEAGSSSFKPPSYVRRPSWAIRPPPSLWDADYLRQLDPRFNASTRSGRNPPNSRSCTHKKSSIFKESDMESCSVETSSIATGGKDDLQSVMTLSDKYKLQEEVHVLPPIISTESSFDIDDKFNGFADRWRNSI
Sbjct: 1 MIRRFYCCKIRSAVLAIGFTLLLIETASVLVTFWVMSNAESVSDSVVSWLRVRRNKFELEELEIIHGKMYFVERYLDFLAFPATFHILLMVSNLLLLSGAVFSNRILLIPWIIMYILKILIITGLLIFFLIKLPSYIFKVIIFLILCPFIIIFGFIIFVIRSFYILLRDLKLKEAMAKVYKNSEAGSSSFKPPSYVRRPSWAIRPPPSLWDADYLRQLDPRFNASTRSGRNPPNSRSCTHKKSSIFKESDMESCSVETSSIATGGKDDLQSVMTLSDKYKLQEEVHVLPPIISTESSFDIDDKFNGFADRWRNSI 315 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003153 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003153 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000003153 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003153 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003153 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003153 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003153 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s175:732203..749764- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003153-685919 ID=EMLSAG00000003153-685919|Name=EMLSAG00000003153|organism=Lepeophtheirus salmonis|type=gene|length=17562bp|location=Sequence derived from alignment at LSalAtl2s175:732203..749764- (Lepeophtheirus salmonis)back to top Add to Basket
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