EMLSAG00000003256, EMLSAG00000003256-686022 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003256
Unique NameEMLSAG00000003256-686022
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003256 vs. C. finmarchicus
Match: gi|592869699|gb|GAXK01087863.1| (TSA: Calanus finmarchicus comp7289079_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.882e+0
Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 0 
Query:   11 DTWSTICFNKDSSLQFAKASCQQLGYASGKFESTTLE 47
            DT+  +C N D++   A  +C   GY   K + T ++
Sbjct:   81 DTYVAVCENFDTACNLAGDACGPHGYCVAKGQDTAID 191
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BLAST of EMLSAG00000003256 vs. L. salmonis peptides
Match: EMLSAP00000003256 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1790:29052:30359:1 gene:EMLSAG00000003256 transcript:EMLSAT00000003256 description:"maker-LSalAtl2s1790-augustus-gene-0.9")

HSP 1 Score: 176.407 bits (446), Expect = 1.808e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 
Query:    1 MEKYKSRNNNDTWSTICFNKDSSLQFAKASCQQLGYASGKFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIPVCDSNLKTI 87
            MEKYKSRNNNDTWSTICFNKDSSLQFAKASCQQLGYASGKFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIPVCDSNLKTI
Sbjct:    1 MEKYKSRNNNDTWSTICFNKDSSLQFAKASCQQLGYASGKFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIPVCDSNLKTI 87
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BLAST of EMLSAG00000003256 vs. L. salmonis peptides
Match: EMLSAP00000002785 (pep:novel supercontig:LSalAtl2s:LSalAtl2s160:520470:523461:1 gene:EMLSAG00000002785 transcript:EMLSAT00000002785 description:"augustus_masked-LSalAtl2s160-processed-gene-4.3")

HSP 1 Score: 155.992 bits (393), Expect = 6.519e-47
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:    7 RNNNDTWSTICFNKDSSLQFAKASCQQLGYASGKFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIPVCDSNLKTI 87
            RNNNDTWSTICFNKDSSL+FAKASCQQLGYAS KFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIP CDSN KTI
Sbjct:  152 RNNNDTWSTICFNKDSSLEFAKASCQQLGYASAKFESTTLENKESSNYKGFSSNVSLTDIKKIDAKILDDIPACDSNPKTI 232
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003256 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003256 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592869699|gb|GAXK01087863.1|2.882e+029.73TSA: Calanus finmarchicus comp7289079_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003256 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000032561.808e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1790:2905... [more]
EMLSAP000000027856.519e-4795.06pep:novel supercontig:LSalAtl2s:LSalAtl2s160:52047... [more]
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BLAST of EMLSAG00000003256 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003256 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003256 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003256 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1790supercontigLSalAtl2s1790:29052..30359 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1790-augustus-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003256 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003256EMLSAT00000003256-699103Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1790:29052..30359+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003256-686022 ID=EMLSAG00000003256-686022|Name=EMLSAG00000003256|organism=Lepeophtheirus salmonis|type=gene|length=1308bp|location=Sequence derived from alignment at LSalAtl2s1790:29052..30359+ (Lepeophtheirus salmonis)
ATGGAGAAATACAAATCTAGGTATGTTTTTACTCTGATAGTTTTTASTTC
ATGTTTAAACAAAATGTTATCGATTTTAGGAACAATAATGATACTTGGTC
AACCATTTGTTTTAATAAAGACTCATCTCTCCAATTTGCAAAAGCTTCTT
GTCAGCAATTAGGATACGCTTCTGGTAAATTTGAAAGTACTACCTTAGAA
AATAAAGAATCATCTAACTACAAGGGTTTCAGCTCCAATGTATCTCTAAC
CGATATTAAAAAAATTGATGCAAAGATCTTAGATGACATACCAGTCTGTG
ACAGCAATCTCAAGACAATTTGTGAGGAATTTGGAATGTTTATTATCCCA
TCTACTTTTTCTTTAATTATTTGTGAATATATTTATTTATAGAATGTTCA
AAACGAACACTTACTGAGAGACAAATAAAGGAATTGAAGGCCCAAAGCAC
CATCAACATTACCTGTCTAACCTCAGAGAATGAACTTTGGCCTTTTTTAG
CATATCTATTTAATGTAAAAAGGAAAACAASTTGTGATGTTACAATTTTA
AATCCGGAGTGGTTGATTACCTCGCATGGATGTATGGKTGAGAGGTTTGT
AACCATATTCATTTATTTCAAAAGAGGTTTTGTAATATTTTTTATAATAG
ATCAATGGATCCTTTGGAATAGGTAGCCTTTGCTGGCCCTTCTAATGGAC
AAACAGATCAATCAAACACTCAAATTAATATAGTAAAGAGAATAGTTTCA
AATCCCTCAGTACGATTCCAGAAAGGATATTATACTGACGATTTGGCTCM
TATTYAACTAAATGATCCTTTGATCTTSAACGWTCATGTTKAAGCCACTT
GTTTGGAAAAGTTTTCTCTTAAAAATAACATTTGCTTTGTAGCAGGATGG
GCAGATGTAAATAAGGAGGGTAAGTAAAGCAACAGCTCATTGATTAGTAA
TTATACTAATATTTGATTATTTTTTTACATACTACATTCATAGGTGTAAT
CTTTATACAATACCTCGACAGAATACCATGTAATTCACAGTCATATTATA
ACAAATTACTAAATGGTAATTCTTTGTGTACTTTATCTAAACACCAAAAC
ATCCTGTGTAGAGTAAGTTTAATAGCTTTCAAATATAGCCAAGGATGTGA
AATATGCAATCTTCTTTAATTTTTAGATGGACAATGGAGCGCCACTTTTG
TGCTACCAGGGTGATAGATGGAGACTTTGTGGTATTTTAAGTAGGGAAGG
GAGTGCCTTCCGTCAACTCTTCCAGATATTTTCACATGTGTTGATTCATG
GAAAGTAA
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