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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000003322 vs. C. finmarchicus
Match: gi|592947438|gb|GAXK01011115.1| (TSA: Calanus finmarchicus comp3776761_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 7.831e+0 Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 0
Query: 101 TQTLPHITPSNTKKKVTIVEDNNTESS 127
TQ PH TP TKK+ I+ED++ + S
Sbjct: 9 TQKFPHFTPKTTKKE-RILEDDDVDES 86
BLAST of EMLSAG00000003322 vs. L. salmonis peptides
Match: EMLSAP00000003322 (pep:novel supercontig:LSalAtl2s:LSalAtl2s182:303336:311399:1 gene:EMLSAG00000003322 transcript:EMLSAT00000003322 description:"maker-LSalAtl2s182-snap-gene-3.18") HSP 1 Score: 259.996 bits (663), Expect = 4.219e-90 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query: 1 MDENNEIRKTGSSRRTSIQGLNTHELNDGGHSLKDWNGPHGNAGGTLGRRRDSSLHRNPNYYPSSYHTCDRRADPSFHHHHHHHHPGXSGGSNTASAQVQTQTLPHITPSNTKKKVTIVEDNNTESSV 128
MDENNEIRKTGSSRRTSIQGLNTHELNDGGHSLKDWNGPHGNAGGTLGRRRDSSLHRNPNYYPSSYHTCDRRADPSFHHHHHHHHPGXSGGSNTASAQVQTQTLPHITPSNTKKKVTIVEDNNTESSV
Sbjct: 1 MDENNEIRKTGSSRRTSIQGLNTHELNDGGHSLKDWNGPHGNAGGTLGRRRDSSLHRNPNYYPSSYHTCDRRADPSFHHHHHHHHPGXSGGSNTASAQVQTQTLPHITPSNTKKKVTIVEDNNTESSV 128
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003322 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000003322 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000003322 | 4.219e-90 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s182:30333... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s182 | supercontig | LSalAtl2s182:303336..311399 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | maker-LSalAtl2s182-snap-gene-3.18 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s182:303336..311399+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000003322-686088 ID=EMLSAG00000003322-686088|Name=EMLSAG00000003322|organism=Lepeophtheirus salmonis|type=gene|length=8064bp|location=Sequence derived from alignment at LSalAtl2s182:303336..311399+ (Lepeophtheirus salmonis)
YTTACGACGTATTGGGAAGCTTGCCCTCTGCTAATTCGTTTAATTCTAAT
CTAAGTTCATCTGCAAGTCTAATAAGAAGACCTGGTTCAATGGATGAAAA
CAATGAGATTCGAAAAACAGGATCAAGCAGACGTACGTCTATTCAGGTGA
GGATAAGATATAAAAACCATATGAGAAAGATATGTTTATYCATAGTTAAA
GTTAGAAATTCTAAATATTTACTCCCAAGTGTGATATTTTCTCCATATTT
GGCGATCCGAACAGTGTTTTTTATAAATTTTCCAAAGCTGTTAATATTAA
CACCCATTAAGTTTATACATGTTCAGAATTGTAGGATTGGTTTTTTTATT
ATAACCCTTCTCCAGTTTTAAGCACAAAAATATTCTTGTTTTTTTAAATT
GGTCAAATCGAAGATTTTTGATTTTATGTAATCTATATATTAGAGTTTTT
GTGTTAGAAATAAAGAATTTTATTTATTCAATATGACAGATTTACTACTT
TTGCAGTTGTTTATAAAAAAAATGGTTGATTATATCCCTTAAAAATTTGT
CAGATAAAATATCTTTTTTTTTTTTCTAATTATTGGATTTGGCTCTATAT
TGATATTCAATACATTGGCAATACTGGAAAGTCATCAGTAAGAAATTTGT
AATTGTATTTATGAAGTTTTTGAATCCAAACATTCCTCACATCAAGTATT
CGAAACCTCATTTATTACATATGATAAGTATGGCGTATAGGGATCATTTT
TAAGGAGAACACATCGATGTATAATGTAATTTTGACTGTGTGTGCTTATA
AAACACAGAGGTTAACACGGAAAAATTATTGGGGATCTATATGTGAAAGG
CCTTGTTTGATTCAGATTTGAATTGGGGATCGATATTGGATAATTTTTTT
CTCAATTTCCTAGCTTGATAAAGAGTGGGATTTGTGTATATTTCATTTCA
CTCATAGCTGCTTGGAGTTGACAAAGTCATGAAAGNCCCCCAAATATTCT
TCAAATTGTCAGATTTACAATAACTTTTATTTTTATTTTWTAGATAGTTA
TAGTGTTTAGAATTTACTACTCTCTCTATATACATAAGTATATTTTACCT
GGAACAAATATCAAAACTTTCCTCTAAAAGAAAAGGTTATGGCCCTTCAG
AGTGTTGAAAACTCATGACATCAATATTTCATCATTTAATTTTATTGTAT
AGGTCCTAATATTTCCGAGTTTAAATGGAAATCATATATTTATGACATAA
GGATATAATAAATTCCCGAAATGAAGTTCATAATTTATAATCAAAAAACT
TTAGTCATTGATTAATATATTGTAAGCATATAAACAGAAAATAAATATCG
TATACATATACTTGATTAAAAATGTAACTAAAGTAGGTAAAAATATATAA
AAAAGTTACTTGTTTGCACAAGGACACAAAAAAAATAGATGATTTCTACA
AATTGATGTAAATTGATTTTCTCTCTGCTTTTTTTTTGTTTAAGGCAAAT
AAAAAATTACCTGATATTACTTTTTCTCTTATGTAATATAATAGATTTCA
AATTGTAGGTAACAATATTTATCTATTTACTACTATATATGTGATTCTAT
AAATAATACACGTAAGATATTATCAATTGAGTATACTGTTTGTACATAAA
TCTGGAATCTTCCAAAAAGGAAATCAATTATGTTCTCATATTTGAAAAGA
AATAAAGTATTATGTTTGAATAAAACATATGTATATATACGCGGCTTAAC
AAAAAAAATAACTTGTAAATGAATTATTGCAAAGTTTACACGTTTTTTTT
CTTGTAACTTTAAAAAAAATGAATTGAAAATGAAATATATAAGCATATAT
TTTCTTTCAAAATGGTCAGTTCAAAAACCACCGAAGAAAACGACAAAAAA
ACTATATTGAAACTTTTATCGAARCGGGGAGWACTCCTTCAGTGATCACA
AAACGGTTAGGAACAGCCTGAGCGATCRTTTAGAATGTCAAAAGGAAGAT
GAAAGCCAGGGAAAGCATAGATATACATCTTCCCTTTGGTGGGAATCTTA
AATTGCATCCCAATATAGTGTAAGAGATTAGCAAGGCTACTCCATTGAAG
AGAATGCGGCTAATGCAGAAAACTTTAGTGTTTCCAGAATATCAATGTTC
AGGACCATAGAAAGCATGTGGAAGGKATTGCAGCAGTTTGGCGTCCCAGA
TCATACCTCAAACGTGATTCAGAATTTCTTCGAAGGCAATTTGTCTTTTG
GAGTATTAAAAAATTGAAAAAACATTCATGGTGTCCGGATCTCAATTCTT
TGGATCATGTTTTCTGGCAGTAAATTGAAAAAGAAAGCCTGTAGACTTAA
CTATTTAAAGAATTATGTCCTAGAAAACAAAGGGAATGAGAAATTTTGTC
CAAGGTCTACATCAATACTGTTAGCAAGGACTTCCGGAAGAGATTAAAGG
CTGTTAATTCAGCGTATGGTGGTTTAATTTACTCAAAATATTACTTTCTA
GCTTACATTTAATCCTACATAAGAATTATCAATTTCAATTTATTTATTTT
CTGCTGCTTACTGTTATTGATAAAATCAGAGTGTTTTGAATTTTTTTTCG
TTACACCAAGTGCGTATGTTTTGTACAAATTACAATTACAATACAAAATC
AGTCATACTAAAATAAGCCTTTCATCATGTATTTACGAGTAATCTTACTA
AAAGCATTGAACTTTATACCGTGTGCAACGGGACCTATTTATGAAATGGT
AATTTCAAATCATATTTAAAGTCAAAAATTACATTATTAATATATCAATT
ATCCAAAGAATATTCAATTATTGCATCACTTTTATCCCATGTATTTTAAA
TTCTTCATTTAAAATTAGTCAGCTCATTTTTTGATATTAAATTGTACAAT
TTGATTATACAAAATACAACATGTACAAGACATTTATATAGGTATATACA
AGTAACTATGTGTTAGGGTTATAACATTGAGTCTTGAAAAAAAAGATAAT
ATCATATTTTTCCATATTCTATAAATATTTCATTTGTTTTCTCACAATAA
ACTATATTAAAGACAAAAGTAGGTATAATTTGNAATAAACCACCTGAGTC
GAGTTTGTGGAAAAAACAGATGGAGAGATACCAATTTGAAGAATAAAATA
ATTATAGCCCTACCATATCAATACGCTGTCTAACTAAAGAAATTAAGGTC
AGTAAGAAGACARTCAGAAAGACTCTGAACCAATACATTGGCCTGAAGAG
CTACGTTAGAGTCCCCCGATATCATATAACTCTATCAATGTTAAGAAAAC
GAAATGAAAATCTTGGACATTTTTGCTGTTCCAATAGGTGAGCTCACATA
TGCCTGATCTCAACGTGTTTCACTATTTCTGACGGATCGTCGTTGAGAGA
GAGTTCAATTCTACTCCTCATCCAAATTTGTTTCTAAGACGACCTTTAGT
AATTTTCGCCCTTTTTTCGAAACAGTATCACTGTAGGGAGAGGCCAAATG
AAATAAAAAATTGTAAAGTTTCAGCTACAATCCCTTATTGTAAATAAATT
TAGTTAATTTATGAAGTAAAGTATATGAAAAAAAAACTTATTTGGATACA
TATAGATTTTTGTTCTTGGGGATCTTAATATGATACCTACATAGGTATAT
AAAATGAAAGTCGAATTATAGTTGATTTTTTTTAAAGCTTTTGTATATCT
TAAAAATAGATGCTATATGAAAATTACATTTAAGTTATTTTTTATATATT
TGCGATTCTTGTTAAAATAAAAGTAACACTGTTTTTTATAATTTTCAGTT
GTAAATATGTATATAAGACGTATATTATCAAATACAAACGTCATATCACG
TTTCATAATTATATTCTTCTCTTTGTGNAACAATATCTTGCTTTATAACT
TCTAAAGTGAAAAGACTGTAGTTATAACAGAAGTACTAATCATTCAATCA
TTAATATTTTTAAATCTGGAAAAATATGWATTATGTATCGCCTTTATGAT
ACAGGCATCAACTTTCAATTATAAGTGAAAAAAGGAGTTACAAACTGAAA
AATTATAACCAGTCTACTTTTTTGACTAAAATTGAACTTTTATTTATGGT
TGCAAGATACTTCCCCCAGGGACAATTTTCCAAATAGAAAATCACTTCCC
AAAATTAAAAACATATAGACAGACCTAACACACTTTTTTCTCATAAATAT
ATACGTTCCCATACGCCTATTTATTACATATTTTCTCAAAACGTATTAGA
AGTTCCAATAAAAACGTGTGTGCCACAAAATTTATGCACGCCCGAAATGT
GAAAGAAACGTGGCTAAATGCGTGGAAATTTGATATTTTGCTCGTTGGTA
TTAGAACATTTACCCCATTTATTATTCGTCCTATTTACTTCCAATACATG
TTATTCTAATCAGAAACATTTAATCCCTTACCCAACAGGTCTAATGCTTT
GTTGTATCTAGTTACATCATTTCAATTAGCAACTTAAAAATCCACTCATA
AAATAGCTTTTTAATTATGAATTTTGAAGTTAATTACAATTACTAATGAA
TTGAAACACTCATATAGCATTCATATAATATTAATAGTAAATTAGTAGAA
TAAATACTACAAACTACTCAGGATAGTAGTTTCACCCAAGAGTACTCTCT
CATAAAAGTCTTTGAGCAAATTTTCAGATAATTAGGAGAAAATAGTCTCC
AACTTTTATAAGCTATAAAATTACAAAAAATATATATTTAATTTTTAGAA
TTCTTGATAAATTTAAACAACAAATGAAGTCATAAAATTTATCAAAAAAA
AAGTTGACCATCGGAAGTTTCGATACACTATCCTTCTTGTAAGGGATCTG
AAACACTGCTCATGAGCTCTTACTGATTATTTAATTAAGTATAAAAAACT
GTGCGTTCCATGGCTTACATGAAAGAGAGCCTTTGGGGTAAACAACTACC
AGAAAAATATAAATATATATTTTTTGTCGAGGTTGTAAGATCCCCTTGTA
AAACTGTGAACAACATTTAATTTCAAACACTTCTCTTGCTAATCCATTTT
TCGAGTATACATAAATATTGGAGATAATCTAACTAAGTTAAATACTTTGT
TCGAGAACTTTAAAAAAATCTTTTTTTTTTTTGAGAAGTTTTTGAAATAA
AATGTTCTTTGGAATTATAATATATTCCAATACATTGTAGTTAGTCTGCT
CTTTTCTGAAAAAAATTAATGAAATATTCAATCATTATTTTTAAAGGATA
AAAAGGACAATTTTTAGTTGATTGTGAGTCAAAGATCAGCAGGAGAAGGG
ATAAGAATTCTCTTGTAACTGTTACTTGTCATACAGTTGACACATGTAGC
ATTATCTCCTTCATCACCATTTTATTTCATTGGAGTCTCAGGGAATCATG
GCTATAAATTATCATTGTGTTTAATTCTATTTGTTATTAGATTAGGAAGT
TTTCCATTATTCAAACAAATAGTACAAGTTGTAATTTCTTCATCTTAAGA
TGTCTTATTTAATTACTGCAAGAGTCATTCCAATTACCAGCTATCATTCA
TACTATCATTTCATTTTAATATGTTAAATTAATGTATTAGATCAATTAGT
TATTAATACTTTTTTTGGTCTCAATACTGATCTCACAATAGATAAATTGT
TTTTTTGTATTTTTTGTTCAGATTTGCTCATTTTAGCAAAGGCTTCTGTA
GTGAATAACAATGAAATCATTATGTTATCTATGTATACAAAAAGTAGCCA
TTTGGAATACGATTTTTTATGCAATAAACTGTTTTTTCCCCTTATTTTTC
CAGTATGCATTTCTATGTTGGGTACAGGCTGAGATCTTTACAATACTTGT
ACCATTTCTACGTCTCACAACACCTTTTGTTTGTCCTATCATTTCCTTTC
GGTTTATTAAAATTAATTATATTTTACGTATTTACTTAAAGCCTTAAAAT
ATACTACAGAATAAATTTTATTCCCACATAATTTTTAATAAAATATTCAA
CAATTACATTAATAGTATTTCAATAATCCATAAAATATTCAATTATCTTT
ATCAAGAAATTAGTTATATCATTTTTGAGTTGTTGTAACTTCTACAATTT
GCTTATACGTATTCAAGTTACAATTTCTGCACTAAATATGTATGTATATA
TATTTATGAAGAAACCGATTAGACCCAAATTTGGTTTGTTGAATCATTTT
ATTAAAATTATAACTATCTATTTGGATTAATTGTGTAAATTATAACTTCA
TAAATTTGTTATTTTTTGTGCATTTATTCTATTTTACTATGGACGGGTAT
GTTCGATAAAACGTTTTCTTTAAATTTATATATGAAGTTATATTTTATAA
CCCACACCATTACTCCTAAATCTGTGAATTTAACACTTTACACTTTTATT
AAAGATTTATATTTATTATGGCTAACAATTACAGAAAACATCTTTAAAAC
CCCAAATCTCAGATTTGAATGGGTTACGGATCCAATATTTCATTTCTGAG
TAGAACTACTATTAATAATACAATATACCAATTTTGAGTTAACTCCGTTT
CTTTGTGGAATGACTCATATATATATATATATCTATGACTGTAGCTATTA
CTCAAAATATATCATTAGCCTTTCTATGACAAATACGTATAGGAAATAAT
TAATTATAACTTTAAGTGCATTGAATAGAAAAAGAAATATTGACCTTAAT
AAGAATTTCAAATGAGATTATGATTGATGGAACAATTTCCTAAATAAAAA
AGAGTTCCGGTAATTATTGCCAGGTATATGTTGGCAAGGAAACCAGAATT
TTTTCAATTTTTATTAGATTTGTATTTCAACCAACATATGTGTAAATGTG
AATAATTATACTAATTGTATTTACAGGGCTTAAACACTCATGAACTTAAC
GATGGGGGCCATAGTTTAAAGGATTGGAACGGACCCCATGGAAATGCAGG
TGGAACTTTGGGACGAAGGAGAGATTCTTCCCTGCATCGAAATCCTAATT
AGTAAGATCTTAATTGGATATAACATAAAAGTTAGTGTTGGGTTTTATTC
TGGGACTCTTATAATTTTTGACTGGCCGAACTAAATCGGTCCAAGTTTGA
TTTGAACCCGAGTCTGCAATAAAAAAAATCGATAATGATTGCTCCCACAA
AATTGAGTCTTTAGGGAAGAAATTTGAAAATTAAAGGGACCTTTTTTTAA
AGAGAAAAAGTAAATTTGTTATGTTTATATTACGGCTTTGTCTCACTAAC
CCAAATATTTACTATGTATTTTTGTAATGTATATTTCTGCTTACTTTCCC
CAAATCATTGTTAAGAACGTTAATTGGTTGAACTCGAATGAGCTCTTGTT
AAGCTACTGTGAACCATTCCTAACAATTTTGAAGGATAATTGCATTATGG
GGAAGAATTAGCTAATAACAAAGTTATTTATGTAGTTTCATATTTTATAA
TTAGACGGTCTACCATTTTGAACTTTCCGTCAACGATTTCAATTTCACGG
TTAAATATGTTATTAATTTCGGCTTTATCTTTGTTATTACACAGTTATCC
CAGCTCCTATCATACATGTGACCGGCGAGCGGACCCCTCTTTCCATCATC
ATCACCACCATCATCATCCAGGAYCATCAGGTGGATCAAACACCGCATCT
GCACAGGTCCAAACACAGACTCTTCCCCATATAACTCCATCCAATACCAA
AAAGAAAGTAACAATTGTTGAGGATAACAACACGGAGAGCTCTGTCTAAA
TAATATTATGAAGAAAACATTTTTCCCTTTTTACTCAACATCATTTTTTA
TATAAGAAATAAACAAATTTGTTSTCTGTGTTTTTATGTTGGAAAGGTCA
AGTCAAAAAAGAATTGGAGTGAGTTAAGTGTTTTTATTTGGAATACACTT
TGATGCGTATTTAGGTATCTACCTACTTATTGGTTTTACCTATATATGGA
TAAGTAGGTCCTACTCAACCATTCCATACTTTCAACAAGAAAAACCAGTA
ACATAAAGGATTTAATTATATAGCTACATACGCGTACATCAATGAGCATT
AATTGTATACCAAC back to top
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