EMLSAG00000003352, EMLSAG00000003352-686118 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003352
Unique NameEMLSAG00000003352-686118
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003352 vs. C. finmarchicus
Match: gi|592955206|gb|GAXK01003350.1| (TSA: Calanus finmarchicus comp187669_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.201e+0
Identity = 17/50 (34.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   49 PLQDNVCSIVETEVFCANIFFNTCFSGEANKIGTSNYVDARIQNLIEKVG 98
            PLQ      V T V     F     SG  NK+  S+YV+A+++ +++K G
Sbjct: 1132 PLQ------VSTPVTKDTSFDRFQASGSTNKLELSDYVEAKVREMMDKEG 1263
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BLAST of EMLSAG00000003352 vs. C. finmarchicus
Match: gi|592782825|gb|GAXK01171743.1| (TSA: Calanus finmarchicus comp62711_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.989e+0
Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 0 
Query:   38 IAKSNLFDSSRPLQD------NVCSIVETEVFCANIFFNTCFSGEANKIGTSNYVDAR 89
            +A+S L DSS PL+D      N+  +++ EVF   +    C     N I    Y+  R
Sbjct: 3307 LAQSRLVDSSNPLEDLYSVLHNLAQLLQLEVFYTQV-VRLCQDRLGNYIRVEEYILGR 3477
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BLAST of EMLSAG00000003352 vs. C. finmarchicus
Match: gi|592790868|gb|GAXK01163700.1| (TSA: Calanus finmarchicus comp4852405_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.274e+0
Identity = 18/54 (33.33%), Postives = 29/54 (53.70%), Query Frame = 0 
Query:   46 SSRPLQDNVC-----SIVETEVFCANIFFNTCFSGEANKIGTSNYVDARIQNLI 94
            +S P+QDN+      SI E +V  + +  +TCF G +  I  S Y+  +  NL+
Sbjct:  200 TSDPIQDNLTLKK*KSIRENQVTIS-MQKHTCFCGISGHIVLSRYISHKFTNLV 358
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BLAST of EMLSAG00000003352 vs. C. finmarchicus
Match: gi|592843948|gb|GAXK01113596.1| (TSA: Calanus finmarchicus comp895006_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 9.368e+0
Identity = 19/67 (28.36%), Postives = 35/67 (52.24%), Query Frame = 0 
Query:   13 ITSFVNAQICSETQVDI-EAKKYGQCIAK-SNLFDSS----RPLQDNVCSIVETEVFCANIFFNTCF 73
            +  ++NA +CS T + + EA     C+ +    FD+S    + +  +VCSI   ++  A++  NTC 
Sbjct:  982 VHQYINASVCSYTCMQVYEATHECNCVQQLMQAFDASTGFHKLMHTSVCSITCMQIMQASMCSNTCM 1182
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BLAST of EMLSAG00000003352 vs. L. salmonis peptides
Match: EMLSAP00000003352 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:14634:15035:-1 gene:EMLSAG00000003352 transcript:EMLSAT00000003352 description:"maker-LSalAtl2s1834-augustus-gene-0.4")

HSP 1 Score: 227.254 bits (578), Expect = 1.164e-77
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 MFNWKIISVFAYITSFVNAQICSETQVDIEAKKYGQCIAKSNLFDSSRPLQDNVCSIVETEVFCANIFFNTCFSGEANKIGTSNYVDARIQNLIEKVGYDIIPLLMNCEEF 111
            MFNWKIISVFAYITSFVNAQICSETQVDIEAKKYGQCIAKSNLFDSSRPLQDNVCSIVETEVFCANIFFNTCFSGEANKIGTSNYVDARIQNLIEKVGYDIIPLLMNCEEF
Sbjct:    1 MFNWKIISVFAYITSFVNAQICSETQVDIEAKKYGQCIAKSNLFDSSRPLQDNVCSIVETEVFCANIFFNTCFSGEANKIGTSNYVDARIQNLIEKVGYDIIPLLMNCEEF 111
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003352 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003352 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592955206|gb|GAXK01003350.1|4.201e+034.00TSA: Calanus finmarchicus comp187669_c0_seq1 trans... [more]
gi|592782825|gb|GAXK01171743.1|6.989e+031.03TSA: Calanus finmarchicus comp62711_c0_seq1 transc... [more]
gi|592790868|gb|GAXK01163700.1|7.274e+033.33TSA: Calanus finmarchicus comp4852405_c0_seq1 tran... [more]
gi|592843948|gb|GAXK01113596.1|9.368e+028.36TSA: Calanus finmarchicus comp895006_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003352 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000033521.164e-77100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:1463... [more]
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BLAST of EMLSAG00000003352 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003352 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003352 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003352 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1834supercontigLSalAtl2s1834:14634..15035 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1834-augustus-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003352 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003352EMLSAT00000003352-699199Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1834:14634..15035-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003352-686118 ID=EMLSAG00000003352-686118|Name=EMLSAG00000003352|organism=Lepeophtheirus salmonis|type=gene|length=402bp|location=Sequence derived from alignment at LSalAtl2s1834:14634..15035- (Lepeophtheirus salmonis)
ATGTTCAACTGGAAAATCATTAGTGTTTTTGCCTATATCACTTCATTTGT
GAATGCTCAGATATGCAGTGAAACACAAGTCGATATTGAAGCTAAAAAAT
ATGGTCAATGTATTGCAAAATCAAATTTATTTGATTCGAGTAGGCCTTTA
CAAGACAACGTCTGCTCTATCGTTGAAACTGAAGTAAGTTGTCAAATAAA
TGACTCAAATATGTGTTTTAATCAATATATTAAATTATTATGTTCTTAGG
TCTTTTGTGCAAATATATTCTTCAACACTTGTTTCTCAGGAGAGGCAAAT
AAAATTGGGACATCAAACTATGTTGATGCACGAATCCAGAACTTGATTGA
AAAGGTTGGCTACGATATTATTCCTTTACTAATGAATTGCGAGGAATTTT
AA
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