EMLSAG00000003445, EMLSAG00000003445-686211 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003445 vs. GO
Match: - (symbol:lmd-5 "Protein LMD-5" species:6239 "Caenorhabditis elegans" [GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA] [GO:0004568 "chitinase activity" evidence=IEA] [GO:0005975 "carbohydrate metabolic process" evidence=IEA] [GO:0006032 "chitin catabolic process" evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA] [GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA] InterPro:IPR001002 InterPro:IPR001223 InterPro:IPR001579 InterPro:IPR011583 InterPro:IPR013781 Pfam:PF00704 PROSITE:PS01095 SMART:SM00270 SMART:SM00636 InterPro:IPR018392 Pfam:PF01476 Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0005975 CAZy:CBM18 GO:GO:0008061 GO:GO:0004568 GO:GO:0016998 GO:GO:0006032 CAZy:GH18 eggNOG:COG3325 GeneTree:ENSGT00550000074323 SMART:SM00257 OrthoDB:EOG7ZGX3G CAZy:CBM50 InterPro:IPR010264 Pfam:PF05938 EMBL:FO081110 HOGENOM:HOG000017622 PIR:T29275 RefSeq:NP_504806.1 UniGene:Cel.27512 ProteinModelPortal:Q94298 SMR:Q94298 STRING:6239.T01C4.1 PaxDb:Q94298 EnsemblMetazoa:T01C4.1 GeneID:187942 KEGG:cel:CELE_T01C4.1 UCSC:T01C4.1 CTD:187942 WormBase:T01C4.1 InParanoid:Q94298 OMA:YAVRNDG NextBio:937030 Uniprot:Q94298) HSP 1 Score: 45.8246 bits (107), Expect = 6.291e-4 Identity = 21/52 (40.38%), Postives = 30/52 (57.69%), Query Frame = 0 Query: 43 GRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFN 94 GRCG + +G C+ + + C CGIG+EYC+CDGC ++RT N Sbjct: 1432 GRCGKDIEKINGKMPICNPDDDTKYCCSNGGYCGIGDEYCKCDGCVNYRTTN 1483
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592824439|gb|GAXK01130129.1| (TSA: Calanus finmarchicus comp71345_c1_seq6 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 7.368e-7 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLA 96 +LF V + + + + +S+L +R DGRCG + L +G P C+ +G PCCS K CG ++CEC+ C D+ ++ Sbjct: 373 LLFLVSVQVSQTYGQKSSLL-WREDGRCGDKYPLPNGNPGQCNPDGNGPKKGPCCS-PKGFCGNTAKHCECETCMDYSKVEVS 615
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592824438|gb|GAXK01130130.1| (TSA: Calanus finmarchicus comp71345_c2_seq1 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 9.299e-7 Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRD 99 +LF V + + + + +S+L +R DGRCG + L +G P C+ +G PCCS K CG ++CEC+ C D+ +++ + Sbjct: 83 LLFLVSVQVSQTYGQKSSLL-WREDGRCGDKYPLPNGNPGQCNPDGNGPKKGPCCS-PKGFCGNTAKHCECETCMDYSKVEVSKDE 334
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592824440|gb|GAXK01130128.1| (TSA: Calanus finmarchicus comp71345_c1_seq5 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.046e-6 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLA 96 +LF V + + + + +S+L +R DGRCG + L +G P C+ +G PCCS K CG ++CEC+ C D+ ++ Sbjct: 519 LLFLVSVQVSQTYGQKSSLL-WREDGRCGDKYPLPNGNPGQCNPDGNGPKKGPCCS-PKGFCGNTAKHCECETCMDYSKVEVS 761
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592824441|gb|GAXK01130127.1| (TSA: Calanus finmarchicus comp71345_c1_seq4 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.233e-6 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLA 96 +LF V + + + + +S+L +R DGRCG + L +G P C+ +G PCCS K CG ++CEC+ C D+ ++ Sbjct: 631 LLFLVSVQVSQTYGQKSSLL-WREDGRCGDKYPLPNGNPGQCNPDGNGPKKGPCCS-PKGFCGNTAKHCECETCMDYSKVEVS 873
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592824442|gb|GAXK01130126.1| (TSA: Calanus finmarchicus comp71345_c1_seq3 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.320e-6 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLA 96 +LF V + + + + +S+L +R DGRCG + L +G P C+ +G PCCS K CG ++CEC+ C D+ ++ Sbjct: 727 LLFLVSVQVSQTYGQKSSLL-WREDGRCGDKYPLPNGNPGQCNPDGNGPKKGPCCS-PKGFCGNTAKHCECETCMDYSKVEVS 969
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592769961|gb|GAXK01184607.1| (TSA: Calanus finmarchicus comp134451_c7_seq1 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 3.123e-5 Identity = 40/135 (29.63%), Postives = 62/135 (45.93%), Query Frame = 0 Query: 18 ILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNG----ASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNERFF-IISHLTKHLNINNWATIDHIQYSKKTN--QTRINYI 145 ++F + + KG + TS+L +R DGRCG L G P C G PCCS K CG ++CEC C D+ +++ S L + E+ ++ + N N D+ + +T QTR+ I Sbjct: 267 LIFSLGNYQTKG--QKTSLL-WREDGRCGEKFPLPTGNPGQCDPEGNGPKKGPCCS-PKGFCGNTVKHCECATCVDYSLVPETKKE-SAKLDKQEKLTKLVKAWSSVNNSTNMKDSDNDMDTSETTTIQTRVGAI 656
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592865068|gb|GAXK01092494.1| (TSA: Calanus finmarchicus comp77645_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 8.957e-5 Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0 Query: 31 YRMTSILG-YRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFR 91 YR +LG R+D RCG L G+P+ C N + CCS + CG G ++C C GC D+R Sbjct: 495 YRPIDLLGSVRSDRRCGGEFPLPDGSPAQCDGNSGNHCCS-KHGYCGPGPDHCGCPGCVDYR 677 HSP 2 Score: 43.8986 bits (102), Expect = 6.394e-4 Identity = 25/63 (39.68%), Postives = 34/63 (53.97%), Query Frame = 0 Query: 33 MTSILGYRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNL 95 TS +R DG+CGP H L G + C N CCS + CG +E+C CD C ++R +L Sbjct: 327 FTSSGLFRPDGKCGPLHPLDDGTAAECDPNSEYFCCS-EHGFCGSTQEHCYCDTCVNYRPIDL 512 HSP 3 Score: 43.1282 bits (100), Expect = 1.194e-3 Identity = 24/53 (45.28%), Postives = 28/53 (52.83%), Query Frame = 0 Query: 40 RNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRT 92 R D RCG L G PS C PCCS + CG G+ +C C CTD+RT Sbjct: 720 RVDRRCGNEFPLPDGGPSECDGGSIKPCCS-KWGYCGPGDAHCACPTCTDYRT 875 HSP 4 Score: 35.039 bits (79), Expect = 3.805e-1 Identity = 27/86 (31.40%), Postives = 38/86 (44.19%), Query Frame = 0 Query: 39 YRNDGRCGPNHRLRHGA-PSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNERFFIISHLTKHLNIN 123 +RND RCGP L G+ P C+ + CCS + CG E+C CD C N + + + F I L KH+ + Sbjct: 921 WRNDRRCGPEFPLPDGSGPGECNPDSDKFCCS-KWGYCGGDGEHCGCDEC-----VNYLNK*AEVLVDLKYIFLIKGDLKKHVKLG 1160
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592913548|gb|GAXK01044827.1| (TSA: Calanus finmarchicus comp309557_c0_seq5 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 2.559e-3 Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 0 Query: 39 YRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRT 92 +R+DGRCG N + +GAP C+ PCCS CG E +C+C C D+ T Sbjct: 210 WRSDGRCGKNFTMSNGAPYQCNP-ARVPCCSAYG-YCGDTEAHCDCASCVDYTT 365
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592913550|gb|GAXK01044825.1| (TSA: Calanus finmarchicus comp309557_c0_seq3 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 2.747e-3 Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 0 Query: 39 YRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRT 92 +R+DGRCG N + +GAP C+ PCCS CG E +C+C C D+ T Sbjct: 210 WRSDGRCGKNFTMSNGAPYQCNP-ARVPCCSAYG-YCGDTEAHCDCASCVDYTT 365
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Match: gi|592913552|gb|GAXK01044823.1| (TSA: Calanus finmarchicus comp309557_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 2.785e-3 Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 0 Query: 39 YRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRT 92 +R+DGRCG N + +GAP C+ PCCS CG E +C+C C D+ T Sbjct: 210 WRSDGRCGKNFTMSNGAPYQCNP-ARVPCCSAYG-YCGDTEAHCDCASCVDYTT 365
BLAST of EMLSAG00000003445 vs. L. salmonis peptides
Match: EMLSAP00000003445 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:663581:665968:-1 gene:EMLSAG00000003445 transcript:EMLSAT00000003445 description:"maker-LSalAtl2s188-augustus-gene-6.43") HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0 Query: 1 MILGGNINIQLFVLCFQILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNERFFIISHLTKHLNINNWATIDHIQYSKKTNQTRINYILIIRESHCSKTQPLELDHCQLKSNDINRIACFITLENYSSPKMKIVNKDCIRAKVYEGKPRAQKLRPQMKKSYNSSLIEYTLIKLTQIDGKYNWYTHIGVPKVSPHKDYQDVAHIELKIAPSICQRNKHFFLGCSGILNGEVKSCSVDVRVSVEKNYRLIHFNCDAICGTRSSNNFEDQSWTHWSKGLCHQGVLSRIRFCYDHLSRKPAFDCEGMDIKLTE 366 MILGGNINIQLFVLCFQILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNERFFIISHLTKHLNINNWATIDHIQYSKKTNQTRINYILIIRESHCSKTQPLELDHCQLKSNDINRIACFITLENYSSPKMKIVNKDCIRAKVYEGKPRAQKLRPQMKKSYNSSLIEYTLIKLTQIDGKYNWYTHIGVPKVSPHKDYQDVAHIELKIAPSICQRNKHFFLGCSGILNGEVKSCSVDVRVSVEKNYRLIHFNCDAICGTRSSNNFEDQSWTHWSKGLCHQGVLSRIRFCYDHLSRKPAFDCEGMDIKLTE Sbjct: 1 MILGGNINIQLFVLCFQILFGVQSKTDKGFYRMTSILGYRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNERFFIISHLTKHLNINNWATIDHIQYSKKTNQTRINYILIIRESHCSKTQPLELDHCQLKSNDINRIACFITLENYSSPKMKIVNKDCIRAKVYEGKPRAQKLRPQMKKSYNSSLIEYTLIKLTQIDGKYNWYTHIGVPKVSPHKDYQDVAHIELKIAPSICQRNKHFFLGCSGILNGEVKSCSVDVRVSVEKNYRLIHFNCDAICGTRSSNNFEDQSWTHWSKGLCHQGVLSRIRFCYDHLSRKPAFDCEGMDIKLTE 366
BLAST of EMLSAG00000003445 vs. L. salmonis peptides
Match: EMLSAP00000003444 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:639970:663574:1 gene:EMLSAG00000003444 transcript:EMLSAT00000003444 description:"maker-LSalAtl2s188-augustus-gene-7.22") HSP 1 Score: 60.4622 bits (145), Expect = 4.651e-10 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0 Query: 31 YRMTSILG-YRNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRT 92 YR + G R+D RCG L G PS C A+PCCS CG G+++C CDGC DFR+ Sbjct: 4018 YRPLKVEGKVRSDRRCGKMFPLEDGTPSECQPKSANPCCS-AFGYCGPGDDHCTCDGCIDFRS 4079 HSP 2 Score: 52.7582 bits (125), Expect = 1.113e-7 Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 0 Query: 40 RNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFR 91 R D RCG ++ L G P+ C N +PCCS + CG G ++C+C C D+R Sbjct: 4093 RPDRRCGNSYPLSDGTPAECDSNSPNPCCS-KWGYCGPGSDHCDCPECVDYR 4143
BLAST of EMLSAG00000003445 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold180_size281610-snap-gene-0.25 (protein:Tk11853 transcript:maker-scaffold180_size281610-snap-gene-0.25-mRNA-1 annotation:"agglutinin isolectin 1 precursor") HSP 1 Score: 52.7582 bits (125), Expect = 6.792e-8 Identity = 28/70 (40.00%), Postives = 37/70 (52.86%), Query Frame = 0 Query: 40 RNDGRCGPNHRLRHGAPSHCSVNGASPCCSYQKESCGIGEEYCECDGCTDFRTFNLAQRDVSIHLRRNER 109 R D RCG + L G PS C NG PCCS + CG G ++CEC C D+R+ + + RN+R Sbjct: 275 RTDRRCGAQYPLTDGTPSECDPNGPHPCCS-KWNFCGPGADHCECPTCVDYRSPDQKAVNDFTGTVRNDR 343 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003445 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000003445 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000003445 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003445 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003445 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003445 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003445 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s188:663581..665968- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003445-686211 ID=EMLSAG00000003445-686211|Name=EMLSAG00000003445|organism=Lepeophtheirus salmonis|type=gene|length=2388bp|location=Sequence derived from alignment at LSalAtl2s188:663581..665968- (Lepeophtheirus salmonis)back to top Add to Basket
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