EMLSAG00000003460, EMLSAG00000003460-686226 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840631|gb|GAXK01116913.1| (TSA: Calanus finmarchicus comp491622_c1_seq8 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.235e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2538 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 2780
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840632|gb|GAXK01116912.1| (TSA: Calanus finmarchicus comp491622_c1_seq7 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.235e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2565 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 2807
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840633|gb|GAXK01116911.1| (TSA: Calanus finmarchicus comp491622_c1_seq6 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.238e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2889 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 3131
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840634|gb|GAXK01116910.1| (TSA: Calanus finmarchicus comp491622_c1_seq5 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.238e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2916 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 3158
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840635|gb|GAXK01116909.1| (TSA: Calanus finmarchicus comp491622_c1_seq4 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.242e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2538 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 2780
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840636|gb|GAXK01116908.1| (TSA: Calanus finmarchicus comp491622_c1_seq3 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.242e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2565 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 2807
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840637|gb|GAXK01116907.1| (TSA: Calanus finmarchicus comp491622_c1_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.244e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2889 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 3131
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592840638|gb|GAXK01116906.1| (TSA: Calanus finmarchicus comp491622_c1_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.245e-1 Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0 Query: 42 DNQLLN---GYPFNERPDQL---HLHGQKTFHENSEKSLVLQLYEVISNVQG----------LFSFFSLASFPVLRQRLDR 106 DN LLN G N QL H +K + SEK +L L+ +S+ QG LF++ S +S P+L Q + R Sbjct: 2916 DNNLLNFDLGIARNTETGQLEFFHEQQKKKYPVMSEKEALLALFSFVSSNQGISGMQVSTTTLFTYSSYSSLPILLQAVKR 3158
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592754028|gb|GAXK01200385.1| (TSA: Calanus finmarchicus comp306517_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 5.546e-1 Identity = 20/48 (41.67%), Postives = 23/48 (47.92%), Query Frame = 0 Query: 53 ERPDQLHLHGQKTFHENSEKSLVLQLYEVISNVQGLFSFFSLASFPVL 100 E PDQ L F E K L + + V+ N L FFSLAS P L Sbjct: 72 ELPDQACLPPMNLFGEKVGKYLNVLICTVVGN---LLEFFSLASLPFL 206
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Match: gi|592937149|gb|GAXK01021404.1| (TSA: Calanus finmarchicus comp2838419_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.058e+0 Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 51 FNERPDQLHLHGQKTFHENSEKSLVLQLYEVISNVQGLFSFFSLASFPVL 100 F PD++ L GQ S S+ +QL + V GLF L S P+L Sbjct: 67 FGGNPDKITLFGQ------SAGSMAVQLLMMSGQVSGLFRAAILQSGPIL 198
BLAST of EMLSAG00000003460 vs. L. salmonis peptides
Match: EMLSAP00000003460 (pep:novel supercontig:LSalAtl2s:LSalAtl2s18:1032575:1039682:1 gene:EMLSAG00000003460 transcript:EMLSAT00000003460 description:"snap_masked-LSalAtl2s18-processed-gene-10.4") HSP 1 Score: 243.817 bits (621), Expect = 5.270e-84 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 1 MQLENKKCLDTTSEWHVDSLSKTNNIYSYLIFSQVAKQRRADNQLLNGYPFNERPDQLHLHGQKTFHENSEKSLVLQLYEVISNVQGLFSFFSLASFPVLRQRLDRLAKIHPESART 117 MQLENKKCLDTTSEWHVDSLSKTNNIYSYLIFSQVAKQRRADNQLLNGYPFNERPDQLHLHGQKTFHENSEKSLVLQLYEVISNVQGLFSFFSLASFPVLRQRLDRLAKIHPESART Sbjct: 1 MQLENKKCLDTTSEWHVDSLSKTNNIYSYLIFSQVAKQRRADNQLLNGYPFNERPDQLHLHGQKTFHENSEKSLVLQLYEVISNVQGLFSFFSLASFPVLRQRLDRLAKIHPESART 117 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003460 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003460 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000003460 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003460 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003460 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003460 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003460 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s18:1032575..1039682+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003460-686226 ID=EMLSAG00000003460-686226|Name=EMLSAG00000003460|organism=Lepeophtheirus salmonis|type=gene|length=7108bp|location=Sequence derived from alignment at LSalAtl2s18:1032575..1039682+ (Lepeophtheirus salmonis)back to top Add to Basket
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